Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00520 and RBAM_003200

See Amino acid alignment / Visit BSNT_00520 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:16
# Commandline: needle
#    -asequence dna-align/BSNT_00520___yceH.1.9828.seq
#    -bsequence dna-align/RBAM_003200___yceH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00520___yceH-RBAM_003200___yceH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00520___yceH-RBAM_003200___yceH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00520___yceH
# 2: RBAM_003200___yceH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1092
# Identity:     916/1092 (83.9%)
# Similarity:   916/1092 (83.9%)
# Gaps:           3/1092 ( 0.3%)
# Score: 3877.0
# 
#
#=======================================

BSNT_00520___      1 ATGACAACAGAAAATCAAAATCCGCTTGTTCTCGATAAAAATGAAGAGAT     50
                     |||   ||||||||||||||||||||||||||.|||||||||||||||||
RBAM_003200__      1 ATG---ACAGAAAATCAAAATCCGCTTGTTCTTGATAAAAATGAAGAGAT     47

BSNT_00520___     51 TTCCCAGCAAAAAGCTGACGATATCCGTCTTCAGCTCCGTCAGGAACCAG    100
                     |||..|.||||||||.||.||.|||.|..|.|||||.||.||.||.||.|
RBAM_003200__     48 TTCTGAACAAAAAGCAGATGACATCAGGGTGCAGCTGCGCCAAGACCCTG     97

BSNT_00520___    101 AAGTGAAGCGGCTTGCTCAACAAATTGACGTTAAAAACCAAATGGAGCTG    150
                     |.|||.||||..||.|.||.||.||||||||.||||||||||||||||||
RBAM_003200__     98 AGGTGCAGCGCATTTCACAGCAGATTGACGTGAAAAACCAAATGGAGCTG    147

BSNT_00520___    151 CTTGAGTACGGCAAGGAGCCGGCCGTTGAAATATCCAAGTTCTCTGACCG    200
                     |||||||||||.||.||.|||||.||||||||.||.||||||||.|||||
RBAM_003200__    148 CTTGAGTACGGAAAAGAACCGGCAGTTGAAATCTCGAAGTTCTCCGACCG    197

BSNT_00520___    201 CATCTTGGGGATGATGAAAACAACAAGTGTGACAGACTCCGGCACAATGC    250
                     ||||||....||||||||||||||||||||.||.||.||.||||||||||
RBAM_003200__    198 CATCTTAAATATGATGAAAACAACAAGTGTCACGGATTCAGGCACAATGC    247

BSNT_00520___    251 TGACTCAGCTTGGGAAAATCATGGACCGCTTTGACAAAAATGATTTTGAT    300
                     ||||.|||||.||.||||||||||||||.|||||||||||||||||.|||
RBAM_003200__    248 TGACGCAGCTCGGAAAAATCATGGACCGTTTTGACAAAAATGATTTCGAT    297

BSNT_00520___    301 GAGCCAAAGGGATTAATGGCGAAAATTTTCAAACGCGGCGGCAGCATGAT    350
                     ||.|||||.|||||..|.||.|||||.||||||||||||..|||||||||
RBAM_003200__    298 GAACCAAAAGGATTTCTCGCTAAAATGTTCAAACGCGGCAACAGCATGAT    347

BSNT_00520___    351 TGAAAAAATCTTTAAAAAGTATCAGACGCTTGGCGGAGAGATTGAAAAAA    400
                     ||||||.||.|||.|||||||.|..||.||.||||||||.||||||||||
RBAM_003200__    348 TGAAAAGATTTTTCAAAAGTACCGCACCCTGGGCGGAGAAATTGAAAAAA    397

BSNT_00520___    401 TCCACGTTGAGATTTCAAAATACAAAGATGAGATGACGAAGACGAACTAC    450
                     |||||||.||.||||||||||||||||||||.|||.|.|||||||||.|.
RBAM_003200__    398 TCCACGTCGAAATTTCAAAATACAAAGATGAAATGGCAAAGACGAACCAT    447

BSNT_00520___    451 ACGCTCGATGAAATGTATGAAAACAATATCAAATACTATATGGAGCTTGA    500
                     |||||.||.||.||||||||||||||.||.||.|||||.|||||||||||
RBAM_003200__    448 ACGCTGGAAGAGATGTATGAAAACAACATTAACTACTACATGGAGCTTGA    497

BSNT_00520___    501 AAAATACGTCGTTGCCGGGCAGATGAAACTGGAAGAGATGCAGTCGATCC    550
                     |||.||.||||||||||||||||||||.||.||.||.||||||.||.||.
RBAM_003200__    498 AAAGTATGTCGTTGCCGGGCAGATGAAGCTTGAGGAAATGCAGGCGCTCA    547

BSNT_00520___    551 TTCCTTCATATGAGGAAAAAGCGGCAAGCGGAAACCAGCTGGCGCAAATG    600
                     |||||||.|||||.||||||||||||.|||||||||||||.||.||||||
RBAM_003200__    548 TTCCTTCTTATGAAGAAAAAGCGGCAGGCGGAAACCAGCTCGCTCAAATG    597

BSNT_00520___    601 CAGCTCGATACATTGCGCAACGGCATTCAGGCGCTTGAGGAACGGGTGTA    650
                     |||||.|||||..||||..||||..|||||||||||||||||||.||.||
RBAM_003200__    598 CAGCTTGATACGCTGCGTGACGGGCTTCAGGCGCTTGAGGAACGTGTCTA    647

BSNT_00520___    651 TGATCTGGACATGGCACGGATGGTGGCGCTTCAAACCGCACCTCAAATCC    700
                     ||||.|.||.|||||.||||||||.|||||.|||||.||.||.||.||||
RBAM_003200__    648 TGATTTAGATATGGCGCGGATGGTAGCGCTGCAAACGGCGCCGCAGATCC    697

BSNT_00520___    701 GTCTCCTGCAGCGAGGAAATGCAAAGCTGATCGGGAAAATCAACTCCGCG    750
                     |.|||||.|||||.||||||.|.|||||.||||||||||||||.|||||.
RBAM_003200__    698 GCCTCCTTCAGCGCGGAAATACGAAGCTCATCGGGAAAATCAATTCCGCT    747

BSNT_00520___    751 TTTATCATTACCATTCCGATTTTCAAAAACGGCATTATTCAGGCTGTTAC    800
                     ||..|||||||.|||||||||||||||||||||||.||||||||||||||
RBAM_003200__    748 TTCGTCATTACGATTCCGATTTTCAAAAACGGCATCATTCAGGCTGTTAC    797

BSNT_00520___    801 GGTGAAACGGCAAAAGCTTGTGGCTGATTCCATGAGCGAGCTTGACCGCC    850
                     .||.||||||||||||||||||||||||||.|||||||||||.|||||||
RBAM_003200__    798 AGTCAAACGGCAAAAGCTTGTGGCTGATTCAATGAGCGAGCTGGACCGCC    847

BSNT_00520___    851 GGACAAACGAGATGCTGAAACGAAATGCTGAAAACATCTCGAGCCAAAGT    900
                     |.||.||.||.||||||||.|||||.||||||||.||.||.|.||||||.
RBAM_003200__    848 GCACGAATGAAATGCTGAAGCGAAACGCTGAAAATATTTCAAACCAAAGC    897

BSNT_00520___    901 GTTGAAATTGCCAGAATGGCCGGCAGACCGAGCATAGATATTGAAACGAT    950
                     ||.|||||||||.|.|||||.|||.|.|||||.||.||.|||||.|||||
RBAM_003200__    898 GTGGAAATTGCCCGTATGGCAGGCCGTCCGAGTATTGACATTGAGACGAT    947

BSNT_00520___    951 CGAATCGTCTTGGAACACGATTGTCAGCGGCATGCAGGAAACAAAACAAA   1000
                     .|||.||||||||||.||||||||||||||.|||||||||||.|||||.|
RBAM_003200__    948 TGAAACGTCTTGGAATACGATTGTCAGCGGTATGCAGGAAACGAAACAGA    997

BSNT_00520___   1001 TCGAGGAAGAAAACAAACGCCTCCGCGAAGACGGCGCGAGACGAATTGCA   1050
                     ||||.||.||.||||.|||..||.|.||||||||.||||.|||.|||..|
RBAM_003200__    998 TCGAAGAGGAGAACAGACGTATCAGAGAAGACGGAGCGAAACGGATTCAA   1047

BSNT_00520___   1051 CAGCTTCAGGATAATATTAAAAAAGCAGCATTGCAGCAATAA   1092
                     |||||||||||||||||||||||.||||..||..||.|.|||
RBAM_003200__   1048 CAGCTTCAGGATAATATTAAAAACGCAGTCTTAAAGAATTAA   1089


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