Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00518 and RBAM_003190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:16
# Commandline: needle
# -asequence dna-align/BSNT_00518___yceG.1.9828.seq
# -bsequence dna-align/RBAM_003190___yceG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00518___yceG-RBAM_003190___yceG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00518___yceG-RBAM_003190___yceG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00518___yceG
# 2: RBAM_003190___yceG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1681
# Identity: 1200/1681 (71.4%)
# Similarity: 1200/1681 (71.4%)
# Gaps: 125/1681 ( 7.4%)
# Score: 4171.5
#
#
#=======================================
BSNT_00518___ 1 ATGAGACAAGAAGAACTAACCATTCATAAAGCACTTCCGG----CTGATG 46
|||||.||.||||||.|....||.|..||.||....|||| | |||
RBAM_003190__ 1 ATGAGGCAGGAAGAATTGGTGATCCGAAAGGCCGAGCCGGAAAAC-GAT- 48
BSNT_00518___ 47 GCGATTGGAAAAGCCTGCTGTTTCAGCCATTGCCG--------------- 81
||.|||.|||...|.|||.|.|.|||..|||||
RBAM_003190__ 49 --GACTGGGAAACGTTTCTGATGCGGCCGCTGCCGGAACGTCCCGGTTAC 96
BSNT_00518___ 82 GAGCGGGATCACTATGAAACTGCACAAGGCCTTTCTTTTTCTCGTCTTGC 131
|||||||| |||| ||.||..|.|||.|.|||||.||
RBAM_003190__ 97 GAGCGGGA--------AAAC-------GGGCTGGCGTTTACCCGTCTCGC 131
BSNT_00518___ 132 CGGTCAGATATTGGGCACGCCTATTGATGAGACGGACTACTATAACGAGC 181
||..|.|.|.||||||||.|||..||||||||||||.||.||.||..|||
RBAM_003190__ 132 CGTCCGGGTTTTGGGCACTCCTTATGATGAGACGGAGTATTACAATAAGC 181
BSNT_00518___ 182 TGTATGAGCTGTC------TGTAAACGACCGCATAACGATTTTGAGTGAA 225
|.|..|||||||| ||.||||..| ||| .|.|||||.|||
RBAM_003190__ 182 TTTTCGAGCTGTCTTCTCATGAAAACATC--CAT----GTGTTGAGCGAA 225
BSNT_00518___ 226 ACGCTTGATAAAACAATCGAACCGGAAACATTTCAAAAGCTTCAGCATAT 275
|||||.|||||.||.||||..||.|||||.|||||...|||.|||||.||
RBAM_003190__ 226 ACGCTGGATAAGACCATCGCGCCTGAAACGTTTCAGGCGCTCCAGCACAT 275
BSNT_00518___ 276 TCATTCCATCAATCAGAAAGAAAAAGGGCTGTCAGTCAGCCGCTTTGTTG 325
.|||||..|||||||.|||||.||||||||.||.||...|.|.|||||.|
RBAM_003190__ 276 CCATTCGGTCAATCAAAAAGAGAAAGGGCTTTCGGTTTCCAGATTTGTCG 325
BSNT_00518___ 326 CCTTTTTGGACGGGGAAAAGCTGATTGCGAAGCACTCAAATCCCCTGATG 375
|.|||.|.||.||||..|.||||.||||.||.||..|..||||.||.|||
RBAM_003190__ 326 CGTTTCTCGATGGGGGCAGGCTGCTTGCCAAACATGCTGATCCGCTTATG 375
BSNT_00518___ 376 CACCGCCATTTAAGAAAAGCGCTGATGACGCTTTTACATACCTTTGCGGA 425
|||||||...|.||||..|||.|.|||||||||||..|.||||||||||.
RBAM_003190__ 376 CACCGCCGGCTGAGAACCGCGTTTATGACGCTTTTGGAAACCTTTGCGGG 425
BSNT_00518___ 426 CAGTCATGAAAAGGGGCTGAATCATCCTGATTTTCGCAGAGTGCTGCTT- 474
|.|.||||||||.||||||||||||||.|||||.||..|.||||| |||
RBAM_003190__ 426 CCGGCATGAAAACGGGCTGAATCATCCCGATTTCCGGCGTGTGCT-CTTG 474
BSNT_00518___ 475 GATGTCTCGAAGTTTTCCTTAAACCATCTGAACCCCTGGCTGGAAAAAAC 524
|||||.||.||||||||..|.|||||.|||||.||.|||||.|||.||.|
RBAM_003190__ 475 GATGTGTCAAAGTTTTCGCTGAACCACCTGAATCCATGGCTTGAACAAGC 524
BSNT_00518___ 525 CGATATAGAGCGGGAGATGCCGAAGATTGTTTGGTATGGAGATGCGACGA 574
||||||||||||.||||||||||||.|.||.|||||||||||.||.||.|
RBAM_003190__ 525 CGATATAGAGCGTGAGATGCCGAAGGTGGTGTGGTATGGAGACGCTACCA 574
BSNT_00518___ 575 AAAGCCAGCTCTATTTCTTATATTATCTGATGCTGGTCGGCTGTGATGTA 624
||||||||||||||||..|.||||||||.||||||.||||||||||.||.
RBAM_003190__ 575 AAAGCCAGCTCTATTTTCTCTATTATCTCATGCTGATCGGCTGTGACGTC 624
BSNT_00518___ 625 CTACTGTTCCATCCGGC--GGGAATCGATCAGCTGGC-GCTTG-TCGACC 670
|||.||||.|||||||| .|||| ||||.|.| | ||||| |.||.|
RBAM_003190__ 625 CTATTGTTTCATCCGGCTGCGGAA--GATCCGTT--CAGCTTGATTGATC 670
BSNT_00518___ 671 CGAAGCAGGAGCTCGGTTTTACGGAAAAGCTCCCGG----ATGTTTCTGA 716
||.|..||||.|||.|.|||..|..|||||||||.| |.| .|.
RBAM_003190__ 671 CGGATGAGGAACTCAGCTTTGTGATAAAGCTCCCCGCAACAGG----CGG 716
BSNT_00518___ 717 GCTTCAGCCGTTTCCGAAAGAAAAACCAGACCGGAAATCAACAGTGGCTT 766
.|||.||||.||.|||||||||||.||.|||.|.|..||.||...|||.|
RBAM_003190__ 717 CCTTGAGCCATTCCCGAAAGAAAAGCCGGACAGAACGTCCACGACGGCCT 766
BSNT_00518___ 767 ACCGCTCAACAAAGGAAATTGAACATGTGCTGAATCACGAGGAATCCATG 816
||||.|||||.||.||||||||.|||||||||||.||.||||||||.|||
RBAM_003190__ 767 ACCGGTCAACGAAAGAAATTGAGCATGTGCTGAACCATGAGGAATCTATG 816
BSNT_00518___ 817 CTGTATAAGCCGTGGCAGTTCAGAGATCACACACCGGTGTCCGTTACGCT 866
.||||||||||.|||||||||||.|||||.||.|||..||||||.||..|
RBAM_003190__ 817 ATGTATAAGCCTTGGCAGTTCAGGGATCATACCCCGCAGTCCGTGACATT 866
BSNT_00518___ 867 GAAAACGACCTATGATGAATTGTTTTTAATCACGAAAGAACGCGCCTTTA 916
.||||||||.||||||||.||.|||.|.||..||||.||.||.||.||||
RBAM_003190__ 867 AAAAACGACGTATGATGAGTTATTTCTCATTGCGAAGGAGCGGGCGTTTA 916
BSNT_00518___ 917 TTCGGCCG-AATTTCAAAGCTGATAAACATTCCATTGAG---------AT 956
|.|||||| ||||| |||||.|| ||..||| .|
RBAM_003190__ 917 TCCGGCCGCAATTT-AAAGCGGA---------CAGGGAGCGGGTGGCCGT 956
BSNT_00518___ 957 TCCGAATGTATTCGCCAAAATTATGGGCGTGTCGAAAGACAATAAGGAAT 1006
||||||..|.||.||.|||.|.|||||.||.||.|||||.|..||.||||
RBAM_003190__ 957 TCCGAACCTTTTTGCGAAAGTGATGGGGGTTTCCAAAGATACGAAAGAAT 1006
BSNT_00518___ 1007 ATTGGAACAGGCTTCATACTCTAGCGGATTATCAGGAAACCGAAATGGTC 1056
|||||||.||.||.|||||....||.||.||||||||.||..|.|||.||
RBAM_003190__ 1007 ATTGGAATAGACTCCATACCGCCGCAGACTATCAGGAGACACACATGATC 1056
BSNT_00518___ 1057 AGAAGCTTTCCATTTACAGAAGAAAT-AAAGTCGAACTATCAATTTCACT 1105
.|.||.|||||.|||||.|||||..| |||| |.|||||.||.|.|||||
RBAM_003190__ 1057 CGCAGTTTTCCGTTTACGGAAGAGCTGAAAG-CCAACTACCAGTATCACT 1105
BSNT_00518___ 1106 ACAGCCACGCACTTGATC-AAGAAGGGAAC-ATTGATCCGGACAAGCTGA 1153
||||.|| |...||||.| ||||| |||.| |||||..||||||.|||||
RBAM_003190__ 1106 ACAGTCA-GGTTTTGAACGAAGAA-GGAGCGATTGACGCGGACAGGCTGA 1153
BSNT_00518___ 1154 TGGCAAGCAATGTGTGGCAGTACAAACAGCTGCCGGCGGGCGTTCAGACT 1203
....||||||..|.|||||||||||.||.||.|||.|.|||||.||||..
RBAM_003190__ 1154 AAAGAAGCAACATCTGGCAGTACAAGCATCTCCCGTCAGGCGTCCAGAAC 1203
BSNT_00518___ 1204 GCCATTGCCAAAACGATTTC-GAGAATGTGCAGGCACCCGCGGCTTAAAG 1252
|||||.|||||...|||||| || .||||||||..||||..||||.||.|
RBAM_003190__ 1204 GCCATCGCCAATGTGATTTCTGA-CATGTGCAGAAACCCAGGGCTGAAGG 1252
BSNT_00518___ 1253 CTTTGC------ATCAGGAACAAGTCAAGGATGTTCAAATCTATTTGTTT 1296
|||||| |.|||| |||| |||||....||||||||||||.
RBAM_003190__ 1253 CTTTGCCCGGGGAGCAGG--CAAG----GGATGCCGCAATCTATTTGTTC 1296
BSNT_00518___ 1297 AAACAAACAACAAACCTGCCTGCTAATCTGCTGAAATTGATTCAAATGTT 1346
...||..|.||.||||||||.|||...||||||.||||||||||.|.|||
RBAM_003190__ 1297 CGCCAGGCGACGAACCTGCCCGCTTCGCTGCTGCAATTGATTCAGACGTT 1346
BSNT_00518___ 1347 CGACTATGCGCAAACCGTTCCGAAACTCGTTTTATATCATACGG----AA 1392
.||.||.||.|||||||||||||||||||||||||||||||||| ||
RBAM_003190__ 1347 TGATTACGCCCAAACCGTTCCGAAACTCGTTTTATATCATACGGAACAAA 1396
BSNT_00518___ 1393 ATGAGCGGCGGACTCGCGCGTTCGGATGCTGCCGCCCTGCTGTTCCTGAA 1442
|| ||||.||||...|||||.||.||.|||||.|||.||||..|.||
RBAM_003190__ 1397 AT----GGCGAACTCAGACGTTCTGACGCCGCCGCTCTGTTGTTTTTAAA 1442
BSNT_00518___ 1443 TGAAATCGGAATCGATATCATCATTTATAATCCGCCCGGACACCAAGATA 1492
|.||.||||..|||||||||||.|.|||||||||||.||.||.|||||.|
RBAM_003190__ 1443 TAAATTCGGCGTCGATATCATCTTGTATAATCCGCCGGGGCATCAAGACA 1492
BSNT_00518___ 1493 TTGAGCAGTTTATTGAAGAGGACCAGTATGATATCCACTGGCTGGATGAC 1542
|||||||.|.|||||||||...|||.|.||||.||||.||||||||.|||
RBAM_003190__ 1493 TTGAGCATTATATTGAAGAAAGCCAATTTGATGTCCATTGGCTGGAGGAC 1542
BSNT_00518___ 1543 ATGGTGTTTCAGCAGGACTACAAAGAGCCTTCGCTTGTGAAAAGGCTCTT 1592
|||||.||||.||||||.||.||.|||||.||.||.||.|.||.|||.||
RBAM_003190__ 1543 ATGGTATTTCGGCAGGAATATAAGGAGCCGTCACTCGTAAGAAAGCTGTT 1592
BSNT_00518___ 1593 CAGAACCATTACCCAAA---------AATAA 1614
.|||||||||||.|||| |.|||
RBAM_003190__ 1593 TAGAACCATTACGCAAAAGCAGGGAGAGTAA 1623
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