Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00507 and RBAM_003120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:15
# Commandline: needle
# -asequence dna-align/BSNT_00507___ycdI.1.9828.seq
# -bsequence dna-align/RBAM_003120___ycdI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00507___ycdI-RBAM_003120___ycdI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00507___ycdI-RBAM_003120___ycdI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00507___ycdI
# 2: RBAM_003120___ycdI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 697
# Identity: 569/697 (81.6%)
# Similarity: 569/697 (81.6%)
# Gaps: 2/697 ( 0.3%)
# Score: 2321.0
#
#
#=======================================
BSNT_00507___ 1 ATGAATCTCGTCTCATTGAAAGATATCGTTTTCGGCTATTCCCATACGCC 50
|||||||||||..||||..|.|||||||||||.||.|||||.|||||.||
RBAM_003120__ 1 ATGAATCTCGTTACATTACAGGATATCGTTTTTGGTTATTCGCATACACC 50
BSNT_00507___ 51 TGTTTTAGATAAAGTATCACTTGATATTGAAAGCGGTGAGTTCGTCGGCA 100
.||..|.||....||.||.||.||.||..|||||||.||.||||||||||
RBAM_003120__ 51 CGTGCTTGACGGCGTGTCGCTGGAAATCAAAAGCGGCGAATTCGTCGGCA 100
BSNT_00507___ 101 TCACTGGGCCAAACGGCGCCTCTAAATCGACGCTCATAAAGGTAATGCTG 150
|.||.||.||.||||||||.||.|||||||||||.||.||.||.|||||.
RBAM_003120__ 101 TTACAGGACCGAACGGCGCGTCAAAATCGACGCTGATGAAAGTCATGCTC 150
BSNT_00507___ 151 GGCATGCTGAAACCGTGGGAAGGCACAG-TGACGATCAGTAAAAGGAATA 199
||||||||.|.|||.||||||||.||.| .|| |||||||||||..||..
RBAM_003120__ 151 GGCATGCTCAGACCTTGGGAAGGAACGGCCGA-GATCAGTAAAAAAAACG 199
BSNT_00507___ 200 CAGAAGGGAAACGCCTGACCATAGGGTACGTCCCGCAGCAAATTTCTTCA 249
|||..||.|||||||||||.||.||.||.||.||||||||.|||||||||
RBAM_003120__ 200 CAGCCGGAAAACGCCTGACAATCGGCTATGTTCCGCAGCAGATTTCTTCA 249
BSNT_00507___ 250 TTTAATGCCGGCTTTCCGAGCACGGTGCTGGAGCTTGTTCAGTCAGGCCG 299
|||||.||.||.||.||.||||||||.|||||||||||.||.||||||||
RBAM_003120__ 250 TTTAACGCAGGATTCCCAAGCACGGTTCTGGAGCTTGTGCAATCAGGCCG 299
BSNT_00507___ 300 CTATACAAAAGGGAAATGGTTTAAACGTTTAAATGAAGAAGATCATCTTG 349
.|||||.||.||.||||||||||||||.||.||.|||...|||||.|.||
RBAM_003120__ 300 TTATACGAAGGGAAAATGGTTTAAACGATTGAACGAAACGGATCACCATG 349
BSNT_00507___ 350 AAGTAGAAAAAGCACTGAAAATGGTGGAAATGTGGGAGCTCCGTCATCGT 399
|.||.|||||.||.|||||.||||||||||||||||||.||||.||.||.
RBAM_003120__ 350 AGGTGGAAAACGCGCTGAAGATGGTGGAAATGTGGGAGTTCCGCCACCGG 399
BSNT_00507___ 400 AAAATCGGTGATTTATCAGGCGGACAGAAACAGAAAATCTGTATCGCCAG 449
||||||||.||||||||.|||||||||||.|||||||||||.||.||.||
RBAM_003120__ 400 AAAATCGGCGATTTATCCGGCGGACAGAAGCAGAAAATCTGCATTGCGAG 449
BSNT_00507___ 450 AATGCTCGCCAGCAACCCGGATCTGCTGATGCTGGACGAACCGACGACAG 499
.|||||.||.|||||.|||||||||||||||||.||.||.|||||.||.|
RBAM_003120__ 450 GATGCTTGCGAGCAATCCGGATCTGCTGATGCTTGATGAGCCGACAACCG 499
BSNT_00507___ 500 CTGTTGATTACGACAGCAGAAAAGGATTTTACGAATTTATGCATCACCTT 549
|.||||||||.||.||||||.|.||.||.||||||||||||||.||.|..
RBAM_003120__ 500 CGGTTGATTATGAAAGCAGACAGGGTTTCTACGAATTTATGCACCATCAG 549
BSNT_00507___ 550 GTGAAAAATCACAACCGCACAGTTGTGATGGTTACTCACGAACAAAACGA 599
||||||||||||||||||||.||.||.|||||.||.||||||||||||||
RBAM_003120__ 550 GTGAAAAATCACAACCGCACCGTCGTCATGGTGACACACGAACAAAACGA 599
BSNT_00507___ 600 AGTACAGCAATTTTTAGATAAAGTGATTCGATTAGAGAGAGGAGAAAAAG 649
|||||||||.|.|.|.||||||||.||.||..|.|||||.||.|||||||
RBAM_003120__ 600 AGTACAGCAGTATCTGGATAAAGTTATACGGCTTGAGAGGGGGGAAAAAG 649
BSNT_00507___ 650 GCGGATGGAAATGTTTGACTTGGAATTCATGCGACGAGCTTTTCTAG 696
|||||||||||||||||||||||||||||||||||||||||||||||
RBAM_003120__ 650 GCGGATGGAAATGTTTGACTTGGAATTCATGCGACGAGCTTTTCTAG 696
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