Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00507 and RBAM_003120

See Amino acid alignment / Visit BSNT_00507 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:15
# Commandline: needle
#    -asequence dna-align/BSNT_00507___ycdI.1.9828.seq
#    -bsequence dna-align/RBAM_003120___ycdI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00507___ycdI-RBAM_003120___ycdI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00507___ycdI-RBAM_003120___ycdI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00507___ycdI
# 2: RBAM_003120___ycdI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 697
# Identity:     569/697 (81.6%)
# Similarity:   569/697 (81.6%)
# Gaps:           2/697 ( 0.3%)
# Score: 2321.0
# 
#
#=======================================

BSNT_00507___      1 ATGAATCTCGTCTCATTGAAAGATATCGTTTTCGGCTATTCCCATACGCC     50
                     |||||||||||..||||..|.|||||||||||.||.|||||.|||||.||
RBAM_003120__      1 ATGAATCTCGTTACATTACAGGATATCGTTTTTGGTTATTCGCATACACC     50

BSNT_00507___     51 TGTTTTAGATAAAGTATCACTTGATATTGAAAGCGGTGAGTTCGTCGGCA    100
                     .||..|.||....||.||.||.||.||..|||||||.||.||||||||||
RBAM_003120__     51 CGTGCTTGACGGCGTGTCGCTGGAAATCAAAAGCGGCGAATTCGTCGGCA    100

BSNT_00507___    101 TCACTGGGCCAAACGGCGCCTCTAAATCGACGCTCATAAAGGTAATGCTG    150
                     |.||.||.||.||||||||.||.|||||||||||.||.||.||.|||||.
RBAM_003120__    101 TTACAGGACCGAACGGCGCGTCAAAATCGACGCTGATGAAAGTCATGCTC    150

BSNT_00507___    151 GGCATGCTGAAACCGTGGGAAGGCACAG-TGACGATCAGTAAAAGGAATA    199
                     ||||||||.|.|||.||||||||.||.| .|| |||||||||||..||..
RBAM_003120__    151 GGCATGCTCAGACCTTGGGAAGGAACGGCCGA-GATCAGTAAAAAAAACG    199

BSNT_00507___    200 CAGAAGGGAAACGCCTGACCATAGGGTACGTCCCGCAGCAAATTTCTTCA    249
                     |||..||.|||||||||||.||.||.||.||.||||||||.|||||||||
RBAM_003120__    200 CAGCCGGAAAACGCCTGACAATCGGCTATGTTCCGCAGCAGATTTCTTCA    249

BSNT_00507___    250 TTTAATGCCGGCTTTCCGAGCACGGTGCTGGAGCTTGTTCAGTCAGGCCG    299
                     |||||.||.||.||.||.||||||||.|||||||||||.||.||||||||
RBAM_003120__    250 TTTAACGCAGGATTCCCAAGCACGGTTCTGGAGCTTGTGCAATCAGGCCG    299

BSNT_00507___    300 CTATACAAAAGGGAAATGGTTTAAACGTTTAAATGAAGAAGATCATCTTG    349
                     .|||||.||.||.||||||||||||||.||.||.|||...|||||.|.||
RBAM_003120__    300 TTATACGAAGGGAAAATGGTTTAAACGATTGAACGAAACGGATCACCATG    349

BSNT_00507___    350 AAGTAGAAAAAGCACTGAAAATGGTGGAAATGTGGGAGCTCCGTCATCGT    399
                     |.||.|||||.||.|||||.||||||||||||||||||.||||.||.||.
RBAM_003120__    350 AGGTGGAAAACGCGCTGAAGATGGTGGAAATGTGGGAGTTCCGCCACCGG    399

BSNT_00507___    400 AAAATCGGTGATTTATCAGGCGGACAGAAACAGAAAATCTGTATCGCCAG    449
                     ||||||||.||||||||.|||||||||||.|||||||||||.||.||.||
RBAM_003120__    400 AAAATCGGCGATTTATCCGGCGGACAGAAGCAGAAAATCTGCATTGCGAG    449

BSNT_00507___    450 AATGCTCGCCAGCAACCCGGATCTGCTGATGCTGGACGAACCGACGACAG    499
                     .|||||.||.|||||.|||||||||||||||||.||.||.|||||.||.|
RBAM_003120__    450 GATGCTTGCGAGCAATCCGGATCTGCTGATGCTTGATGAGCCGACAACCG    499

BSNT_00507___    500 CTGTTGATTACGACAGCAGAAAAGGATTTTACGAATTTATGCATCACCTT    549
                     |.||||||||.||.||||||.|.||.||.||||||||||||||.||.|..
RBAM_003120__    500 CGGTTGATTATGAAAGCAGACAGGGTTTCTACGAATTTATGCACCATCAG    549

BSNT_00507___    550 GTGAAAAATCACAACCGCACAGTTGTGATGGTTACTCACGAACAAAACGA    599
                     ||||||||||||||||||||.||.||.|||||.||.||||||||||||||
RBAM_003120__    550 GTGAAAAATCACAACCGCACCGTCGTCATGGTGACACACGAACAAAACGA    599

BSNT_00507___    600 AGTACAGCAATTTTTAGATAAAGTGATTCGATTAGAGAGAGGAGAAAAAG    649
                     |||||||||.|.|.|.||||||||.||.||..|.|||||.||.|||||||
RBAM_003120__    600 AGTACAGCAGTATCTGGATAAAGTTATACGGCTTGAGAGGGGGGAAAAAG    649

BSNT_00507___    650 GCGGATGGAAATGTTTGACTTGGAATTCATGCGACGAGCTTTTCTAG    696
                     |||||||||||||||||||||||||||||||||||||||||||||||
RBAM_003120__    650 GCGGATGGAAATGTTTGACTTGGAATTCATGCGACGAGCTTTTCTAG    696


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