Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00503 and RBAM_003100

See Amino acid alignment / Visit BSNT_00503 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:15
# Commandline: needle
#    -asequence dna-align/BSNT_00503.1.9828.seq
#    -bsequence dna-align/RBAM_003100___ycdG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00503-RBAM_003100___ycdG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00503-RBAM_003100___ycdG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00503
# 2: RBAM_003100___ycdG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1695
# Identity:     841/1695 (49.6%)
# Similarity:   841/1695 (49.6%)
# Gaps:         633/1695 (37.3%)
# Score: 3182.0
# 
#
#=======================================

BSNT_00503         1 ATGAAAACAGACTGGTGGAAGGATGCAGTGGTGTACCAAATTTACCCGAG     50
                     |||...|..|||||||||||.||.||.||.||.||.|||||.||.|||.|
RBAM_003100__      1 ATGGCGAGTGACTGGTGGAAAGACGCCGTTGTCTATCAAATCTATCCGCG     50

BSNT_00503        51 AAGCTTTCAGGACAGCG-ATGGAGACGGAATTGGGGACTTGCGGGGGATT     99
                     |||||||||.||.| || |.||.|||||.|||||.|||.|||||||||||
RBAM_003100__     51 AAGCTTTCAAGATA-CGAACGGCGACGGCATTGGCGACCTGCGGGGGATT     99

BSNT_00503       100 ATTTCCCGTCTTGACTACATAAAGGAACTCGGGGCAGATGTGATTTGGAT    149
                     ||..|.|||||.||.||.|||||.|||||.||.||.||||||||.|||||
RBAM_003100__    100 ATCGCGCGTCTCGATTATATAAAAGAACTTGGCGCTGATGTGATATGGAT    149

BSNT_00503       150 TTGCCCGATCTATCCTTCTCCGAATGTTGATTACGGGTATGATGTGACAA    199
                     .||||||||.||.||.||.||.||.||.|||.||||.||.||||||||..
RBAM_003100__    150 CTGCCCGATTTACCCGTCGCCAAACGTCGATAACGGCTACGATGTGACGG    199

BSNT_00503       200 ACCATAAGGCGATTATGGATTCTTACGGAACAATGGACGATTTTCACGAG    249
                     |.|||.|.|||||||||||.|||||||||||.|||||.||.||||||||.
RBAM_003100__    200 ATCATCAAGCGATTATGGAATCTTACGGAACGATGGAGGACTTTCACGAT    249

BSNT_00503       250 CTGCTGGACCAG-GTGCATCAG-CGGGGATTAAAGCTGGTGATGGACTTT    297
                     |||||  ..||| .|||..||| ||.|||||||||||.||||||||.||.
RBAM_003100__    250 CTGCT--TACAGAATGCCGCAGCCGCGGATTAAAGCTTGTGATGGATTTC    297

BSNT_00503       298 GTGTTAAATCACACCTCGGTCGAGCATCCGTGGTTTAAAGAAGCGGAGCT    347
                     ||.||||||||.|||||....||||||||.|||||.|||||.|||||..|
RBAM_003100__    298 GTCTTAAATCATACCTCCACGGAGCATCCTTGGTTCAAAGAGGCGGAAAT    347

BSNT_00503       348 GGACAAAA-----ACAGCAAATACCGCAGCTATTATTATTGGCGTCCCGG    392
                     |     ||     ||||||||||||||...||||||..||||||.||.||
RBAM_003100__    348 G-----AATCCGGACAGCAAATACCGCGATTATTATATTTGGCGGCCGGG    392

BSNT_00503       393 CACAAAGAACGGCCCGCCGACGGACTGGCTCTCAAACTATGGATGCCCGG    442
                     |||...|.|||||||||||||.||.|||.|.||..|.||.|||....|.|
RBAM_003100__    393 CACCGCGGACGGCCCGCCGACCGATTGGGTGTCGGATTACGGACAATCCG    442

BSNT_00503       443 TCTGGCAATACGAAGAGCACACCGGAGAATACTATCTCCATATGAATGCC    492
                     |||||||.||||||||.||.||.||.|||||.||.||.||||||||.|||
RBAM_003100__    443 TCTGGCAGTACGAAGAACATACGGGCGAATATTACCTGCATATGAACGCC    492

BSNT_00503       493 GTCAAACAAGCTGATTTAAACTGGGAAAATCCCGAAGTTCGCCAGGCGGT    542
                     |||||||||||.|||.|.||.||||||||||||||.|||||.||..|.||
RBAM_003100__    493 GTCAAACAAGCCGATCTGAATTGGGAAAATCCCGAGGTTCGGCAATCAGT    542

BSNT_00503       543 GTATGACATGATGAAATTTTGGCTCGATAAAGGGGTCGACGGTTTGCGAA    592
                     .||.||.|||||||.||||||||||||||||||.||.|||||.|||||.|
RBAM_003100__    543 ATACGAGATGATGAGATTTTGGCTCGATAAAGGCGTGGACGGATTGCGTA    592

BSNT_00503       593 TTGATCAGCTCCATCTCATTTCTAAGAAAGAATATCTTCCTTCGTATGAG    642
                     |.||.|||||||||||..|.||.||.|||||||||.|.||..|.|||||.
RBAM_003100__    593 TAGACCAGCTCCATCTTCTGTCAAAAAAAGAATATTTGCCGCCATATGAA    642

BSNT_00503       643 GACTATATCAATCAGCAGGCAGAGCCGAAGCCCTTTCAGCCAAATGGCGA    692
                     ||.||.|||...|..|.|||.||.||||||||.||||.||||||.||.|.
RBAM_003100__    643 GATTACATCGCCCGCCGGGCCGATCCGAAGCCTTTTCGGCCAAACGGGGC    692

BSNT_00503       693 ACAAATCCATGACTATTTAAAAGAAATGACAGATGAAGTGTTTTCCCAAT    742
                     ||..||.|||||.||.||||||||||||||..|.||.||.||||||.|||
RBAM_003100__    693 ACGGATACATGATTACTTAAAAGAAATGACGAAAGAGGTATTTTCCAAAT    742

BSNT_00503       743 ATGATGTCATGTCTGTCGGAGAGGTCGG--CAGTGTCACACCGGAAGAAG    790
                     ||.|.||.|||||.|||||.||||.|||  |||||  ||.||.|||||||
RBAM_003100__    743 ATAACGTGATGTCGGTCGGTGAGGCCGGATCAGTG--ACGCCTGAAGAAG    790

BSNT_00503       791 GCCTGAAATTTACGGGAACAGATAAGCATGAGCTGAATATGATTTTTCAC    840
                     |.|||...|..||||||||.|||.|||||||||||||||||||||||||.
RBAM_003100__    791 GGCTGGTCTACACGGGAACCGATGAGCATGAGCTGAATATGATTTTTCAT    840

BSNT_00503       841 TTTCAGCATATGGAGCTTGATCAGCAGCCCGGAAAAGAACATTGGGATTT    890
                     |||||||||||||||||||||||..||||.||..||||.|||||||||.|
RBAM_003100__    841 TTTCAGCATATGGAGCTTGATCAAAAGCCGGGCCAAGAGCATTGGGATGT    890

BSNT_00503       891 GAAGCCCCTTGAGCTTTCTGATTT----AAAATCGGTTTTGACAAAATGG    936
                     .||.||.||||||||.||.|||||    |||    ||..|.|||.|.|||
RBAM_003100__    891 AAAACCGCTTGAGCTGTCCGATTTGAAGAAA----GTGCTCACAGACTGG    936

BSNT_00503       937 CA--AAGAAGCTTGAACATCAAGGCTGGAATACATTGTTTTGGTGCAACC    984
                     ||  || ||.||.||||||||||||||||||||..|||.|||||||||.|
RBAM_003100__    937 CAGGAA-AAACTGGAACATCAAGGCTGGAATACGCTGTATTGGTGCAATC    985

BSNT_00503       985 ACGACCAGCCCCGGATTGTGTCCAGATTCGGAGACGATGGGGAATACCGC   1034
                     |.||||||||||||||.||.|||.|.|||||||||||.||...|||||||
RBAM_003100__    986 ATGACCAGCCCCGGATCGTATCCCGTTTCGGAGACGAAGGCACATACCGC   1035

BSNT_00503      1035 AAAACATCAGCGAAAATGCTGGCAACCGTACTTTATTTTATGA-------   1077
                     |||.||||.||.||||||||.||...|.|.||||||||.||||       
RBAM_003100__   1036 AAAGCATCCGCCAAAATGCTTGCCGTCCTGCTTTATTTCATGAAAGGCAC   1085

BSNT_00503      1077 --------------------------------------------------   1077
                                                                       
RBAM_003100__   1086 GCCGTACATTTACCAGGGGGAAGAAATCGGCATGACAAACGCTCCGTTTG   1135

BSNT_00503      1077 --------------------------------------------------   1077
                                                                       
RBAM_003100__   1136 ACAGAATAGAGGATTATCAAGATATTCAGACCGTCAATATGTATCATAAA   1185

BSNT_00503      1077 --------------------------------------------------   1077
                                                                       
RBAM_003100__   1186 AGGGTATTTGAAATGGGCCGCAACAGGGAAGAAGTCATGGTGTCTATTAT   1235

BSNT_00503      1077 --------------------------------------------------   1077
                                                                       
RBAM_003100__   1236 GGCGAAAAGCCGTGACCATGCCCGTACACCGATGCAGTGGGACGGCAGCA   1285

BSNT_00503      1077 --------------------------------------------------   1077
                                                                       
RBAM_003100__   1286 AGAATGCCGGGTTTACAAAGGGAGAACCGTGGCTGAAGGTCAATCCCAAT   1335

BSNT_00503      1077 --------------------------------------------------   1077
                                                                       
RBAM_003100__   1336 TACAAAACCGTCAATGCGGCCGAGGCTCAGGATGATCCCGATTCTGTATT   1385

BSNT_00503      1077 --------------------------------------------------   1077
                                                                       
RBAM_003100__   1386 GAACTTTTACAAAAAACTGATCCGCCTGCGAAAACAGTATGCTGATGTCA   1435

BSNT_00503      1077 --------------------------------------------------   1077
                                                                       
RBAM_003100__   1436 TAAAAGGCAGCTACACGCTGCTGCTTCCTGATGACCCGCAGCTGTTTGTA   1485

BSNT_00503      1077 --------------------------------------------------   1077
                                                                       
RBAM_003100__   1486 TATGAAAGACAAGCAAACGGACAAAAGCTCATCTCCATCAGCAACGTATC   1535

BSNT_00503      1077 --------------------------------------------------   1077
                                                                       
RBAM_003100__   1536 GAAAGAAGAAGCCGTCTTTTATTGGCCTGATGGCTCCAAACCTGAAAGCG   1585

BSNT_00503      1077 --------------------------------------------------   1077
                                                                       
RBAM_003100__   1586 CCGAGCTTCTTCTCAGCAACTATGATAATGACAGCGGCACGGAATCCCGC   1635

BSNT_00503      1077 ---------------------------------------------   1077
                                                                  
RBAM_003100__   1636 ATCGCATTCCATCCTTATGAAACAAGAGTTTATCTGCTTGCCTGA   1680


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