Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00503 and RBAM_003100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:15
# Commandline: needle
# -asequence dna-align/BSNT_00503.1.9828.seq
# -bsequence dna-align/RBAM_003100___ycdG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00503-RBAM_003100___ycdG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00503-RBAM_003100___ycdG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00503
# 2: RBAM_003100___ycdG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1695
# Identity: 841/1695 (49.6%)
# Similarity: 841/1695 (49.6%)
# Gaps: 633/1695 (37.3%)
# Score: 3182.0
#
#
#=======================================
BSNT_00503 1 ATGAAAACAGACTGGTGGAAGGATGCAGTGGTGTACCAAATTTACCCGAG 50
|||...|..|||||||||||.||.||.||.||.||.|||||.||.|||.|
RBAM_003100__ 1 ATGGCGAGTGACTGGTGGAAAGACGCCGTTGTCTATCAAATCTATCCGCG 50
BSNT_00503 51 AAGCTTTCAGGACAGCG-ATGGAGACGGAATTGGGGACTTGCGGGGGATT 99
|||||||||.||.| || |.||.|||||.|||||.|||.|||||||||||
RBAM_003100__ 51 AAGCTTTCAAGATA-CGAACGGCGACGGCATTGGCGACCTGCGGGGGATT 99
BSNT_00503 100 ATTTCCCGTCTTGACTACATAAAGGAACTCGGGGCAGATGTGATTTGGAT 149
||..|.|||||.||.||.|||||.|||||.||.||.||||||||.|||||
RBAM_003100__ 100 ATCGCGCGTCTCGATTATATAAAAGAACTTGGCGCTGATGTGATATGGAT 149
BSNT_00503 150 TTGCCCGATCTATCCTTCTCCGAATGTTGATTACGGGTATGATGTGACAA 199
.||||||||.||.||.||.||.||.||.|||.||||.||.||||||||..
RBAM_003100__ 150 CTGCCCGATTTACCCGTCGCCAAACGTCGATAACGGCTACGATGTGACGG 199
BSNT_00503 200 ACCATAAGGCGATTATGGATTCTTACGGAACAATGGACGATTTTCACGAG 249
|.|||.|.|||||||||||.|||||||||||.|||||.||.||||||||.
RBAM_003100__ 200 ATCATCAAGCGATTATGGAATCTTACGGAACGATGGAGGACTTTCACGAT 249
BSNT_00503 250 CTGCTGGACCAG-GTGCATCAG-CGGGGATTAAAGCTGGTGATGGACTTT 297
||||| ..||| .|||..||| ||.|||||||||||.||||||||.||.
RBAM_003100__ 250 CTGCT--TACAGAATGCCGCAGCCGCGGATTAAAGCTTGTGATGGATTTC 297
BSNT_00503 298 GTGTTAAATCACACCTCGGTCGAGCATCCGTGGTTTAAAGAAGCGGAGCT 347
||.||||||||.|||||....||||||||.|||||.|||||.|||||..|
RBAM_003100__ 298 GTCTTAAATCATACCTCCACGGAGCATCCTTGGTTCAAAGAGGCGGAAAT 347
BSNT_00503 348 GGACAAAA-----ACAGCAAATACCGCAGCTATTATTATTGGCGTCCCGG 392
| || ||||||||||||||...||||||..||||||.||.||
RBAM_003100__ 348 G-----AATCCGGACAGCAAATACCGCGATTATTATATTTGGCGGCCGGG 392
BSNT_00503 393 CACAAAGAACGGCCCGCCGACGGACTGGCTCTCAAACTATGGATGCCCGG 442
|||...|.|||||||||||||.||.|||.|.||..|.||.|||....|.|
RBAM_003100__ 393 CACCGCGGACGGCCCGCCGACCGATTGGGTGTCGGATTACGGACAATCCG 442
BSNT_00503 443 TCTGGCAATACGAAGAGCACACCGGAGAATACTATCTCCATATGAATGCC 492
|||||||.||||||||.||.||.||.|||||.||.||.||||||||.|||
RBAM_003100__ 443 TCTGGCAGTACGAAGAACATACGGGCGAATATTACCTGCATATGAACGCC 492
BSNT_00503 493 GTCAAACAAGCTGATTTAAACTGGGAAAATCCCGAAGTTCGCCAGGCGGT 542
|||||||||||.|||.|.||.||||||||||||||.|||||.||..|.||
RBAM_003100__ 493 GTCAAACAAGCCGATCTGAATTGGGAAAATCCCGAGGTTCGGCAATCAGT 542
BSNT_00503 543 GTATGACATGATGAAATTTTGGCTCGATAAAGGGGTCGACGGTTTGCGAA 592
.||.||.|||||||.||||||||||||||||||.||.|||||.|||||.|
RBAM_003100__ 543 ATACGAGATGATGAGATTTTGGCTCGATAAAGGCGTGGACGGATTGCGTA 592
BSNT_00503 593 TTGATCAGCTCCATCTCATTTCTAAGAAAGAATATCTTCCTTCGTATGAG 642
|.||.|||||||||||..|.||.||.|||||||||.|.||..|.|||||.
RBAM_003100__ 593 TAGACCAGCTCCATCTTCTGTCAAAAAAAGAATATTTGCCGCCATATGAA 642
BSNT_00503 643 GACTATATCAATCAGCAGGCAGAGCCGAAGCCCTTTCAGCCAAATGGCGA 692
||.||.|||...|..|.|||.||.||||||||.||||.||||||.||.|.
RBAM_003100__ 643 GATTACATCGCCCGCCGGGCCGATCCGAAGCCTTTTCGGCCAAACGGGGC 692
BSNT_00503 693 ACAAATCCATGACTATTTAAAAGAAATGACAGATGAAGTGTTTTCCCAAT 742
||..||.|||||.||.||||||||||||||..|.||.||.||||||.|||
RBAM_003100__ 693 ACGGATACATGATTACTTAAAAGAAATGACGAAAGAGGTATTTTCCAAAT 742
BSNT_00503 743 ATGATGTCATGTCTGTCGGAGAGGTCGG--CAGTGTCACACCGGAAGAAG 790
||.|.||.|||||.|||||.||||.||| ||||| ||.||.|||||||
RBAM_003100__ 743 ATAACGTGATGTCGGTCGGTGAGGCCGGATCAGTG--ACGCCTGAAGAAG 790
BSNT_00503 791 GCCTGAAATTTACGGGAACAGATAAGCATGAGCTGAATATGATTTTTCAC 840
|.|||...|..||||||||.|||.|||||||||||||||||||||||||.
RBAM_003100__ 791 GGCTGGTCTACACGGGAACCGATGAGCATGAGCTGAATATGATTTTTCAT 840
BSNT_00503 841 TTTCAGCATATGGAGCTTGATCAGCAGCCCGGAAAAGAACATTGGGATTT 890
|||||||||||||||||||||||..||||.||..||||.|||||||||.|
RBAM_003100__ 841 TTTCAGCATATGGAGCTTGATCAAAAGCCGGGCCAAGAGCATTGGGATGT 890
BSNT_00503 891 GAAGCCCCTTGAGCTTTCTGATTT----AAAATCGGTTTTGACAAAATGG 936
.||.||.||||||||.||.||||| ||| ||..|.|||.|.|||
RBAM_003100__ 891 AAAACCGCTTGAGCTGTCCGATTTGAAGAAA----GTGCTCACAGACTGG 936
BSNT_00503 937 CA--AAGAAGCTTGAACATCAAGGCTGGAATACATTGTTTTGGTGCAACC 984
|| || ||.||.||||||||||||||||||||..|||.|||||||||.|
RBAM_003100__ 937 CAGGAA-AAACTGGAACATCAAGGCTGGAATACGCTGTATTGGTGCAATC 985
BSNT_00503 985 ACGACCAGCCCCGGATTGTGTCCAGATTCGGAGACGATGGGGAATACCGC 1034
|.||||||||||||||.||.|||.|.|||||||||||.||...|||||||
RBAM_003100__ 986 ATGACCAGCCCCGGATCGTATCCCGTTTCGGAGACGAAGGCACATACCGC 1035
BSNT_00503 1035 AAAACATCAGCGAAAATGCTGGCAACCGTACTTTATTTTATGA------- 1077
|||.||||.||.||||||||.||...|.|.||||||||.||||
RBAM_003100__ 1036 AAAGCATCCGCCAAAATGCTTGCCGTCCTGCTTTATTTCATGAAAGGCAC 1085
BSNT_00503 1077 -------------------------------------------------- 1077
RBAM_003100__ 1086 GCCGTACATTTACCAGGGGGAAGAAATCGGCATGACAAACGCTCCGTTTG 1135
BSNT_00503 1077 -------------------------------------------------- 1077
RBAM_003100__ 1136 ACAGAATAGAGGATTATCAAGATATTCAGACCGTCAATATGTATCATAAA 1185
BSNT_00503 1077 -------------------------------------------------- 1077
RBAM_003100__ 1186 AGGGTATTTGAAATGGGCCGCAACAGGGAAGAAGTCATGGTGTCTATTAT 1235
BSNT_00503 1077 -------------------------------------------------- 1077
RBAM_003100__ 1236 GGCGAAAAGCCGTGACCATGCCCGTACACCGATGCAGTGGGACGGCAGCA 1285
BSNT_00503 1077 -------------------------------------------------- 1077
RBAM_003100__ 1286 AGAATGCCGGGTTTACAAAGGGAGAACCGTGGCTGAAGGTCAATCCCAAT 1335
BSNT_00503 1077 -------------------------------------------------- 1077
RBAM_003100__ 1336 TACAAAACCGTCAATGCGGCCGAGGCTCAGGATGATCCCGATTCTGTATT 1385
BSNT_00503 1077 -------------------------------------------------- 1077
RBAM_003100__ 1386 GAACTTTTACAAAAAACTGATCCGCCTGCGAAAACAGTATGCTGATGTCA 1435
BSNT_00503 1077 -------------------------------------------------- 1077
RBAM_003100__ 1436 TAAAAGGCAGCTACACGCTGCTGCTTCCTGATGACCCGCAGCTGTTTGTA 1485
BSNT_00503 1077 -------------------------------------------------- 1077
RBAM_003100__ 1486 TATGAAAGACAAGCAAACGGACAAAAGCTCATCTCCATCAGCAACGTATC 1535
BSNT_00503 1077 -------------------------------------------------- 1077
RBAM_003100__ 1536 GAAAGAAGAAGCCGTCTTTTATTGGCCTGATGGCTCCAAACCTGAAAGCG 1585
BSNT_00503 1077 -------------------------------------------------- 1077
RBAM_003100__ 1586 CCGAGCTTCTTCTCAGCAACTATGATAATGACAGCGGCACGGAATCCCGC 1635
BSNT_00503 1077 --------------------------------------------- 1077
RBAM_003100__ 1636 ATCGCATTCCATCCTTATGAAACAAGAGTTTATCTGCTTGCCTGA 1680
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