Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00494 and RBAM_003050
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_00494___ycdB.1.9828.seq
# -bsequence dna-align/RBAM_003050___ycdB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00494___ycdB-RBAM_003050___ycdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00494___ycdB-RBAM_003050___ycdB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00494___ycdB
# 2: RBAM_003050___ycdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1659
# Identity: 875/1659 (52.7%)
# Similarity: 875/1659 (52.7%)
# Gaps: 492/1659 (29.7%)
# Score: 2100.5
#
#
#=======================================
BSNT_00494___ 1 ATGAAAGGGGCCGCCTTTGTGAAGAAAGAGGGACTGAAACAAAAAGCACT 50
|||| ||||.|||||.|.|.|||||||....||.||
RBAM_003050__ 1 ATGA---------------TGAATAAAGAAGAATTGAAACAGCTGGCTCT 35
BSNT_00494___ 51 GGAAATCGG-------CCGGGTGCCGACACACTTAAAACTGGA--AA--T 89
...|||||| || |||| |.|| ||..|| || |
RBAM_003050__ 36 CCGAATCGGAAACGTACC---TGCC----CGCT----ACGAGAGTAATGT 74
BSNT_00494___ 90 TGAAGATTA--TGGCAGTGATGACAAAAGAGCCTATTTTTGTTGGACAGA 137
.|||||.|| .||.| |||| ||...||.||||.||.||| |||
RBAM_003050__ 75 GGAAGAATACCGGGAA--GATG-----AGGTTCTGTTTTGGTGGGA-AGA 116
BSNT_00494___ 138 TCCTCAGGATGA----GAATATCGGCATTATCGTGGAACTTGGACC-GGA 182
|.||.|||| ||| ..||||||.||.||.||| ||.|||| |||
RBAM_003050__ 117 ---TAAGAATGATCCGGAA-GCCGGCATCATGGTCGAA-TTAGACCGGGA 161
BSNT_00494___ 183 CGGGGAGCTGGAATCCCTTTCCCGT---GATATTGAGCCTGA-------- 221
|||..|.|||.|||.|.|.|||||| |.|.|..||.||||
RBAM_003050__ 162 CGGAAAACTGAAATACTTATCCCGTCCGGCTTTCCAGACTGATCTGCCGG 211
BSNT_00494___ 222 ---------AAGCGGA---AAAAGGCTGTCTGAGGAGAAACTAGAGGATA 259
||.|||| |||| |||| ||
RBAM_003050__ 212 CTCTTTCGGAATCGGACATAAAA--------------AAAC----GG--- 240
BSNT_00494___ 260 TCATGCGCCAATTTGTCGAGACTCATCATCCGGGGGCACTCTCTGCCTTT 309
|||||....|||.|.||.||.||||.|||.|||||| .||.||..
RBAM_003050__ 241 --ATGCGGGCGTTTTTAGAAACCCATCGTCCTGGGGCA----TTGGCTGA 284
BSNT_00494___ 310 GTTCGTGAA---GAAAA---------TGACCATGCATACGGCGATAAAGT 347
|||| ||| ||||| .|.|.||| |.|||||| ||
RBAM_003050__ 285 GTTC--GAATTGGAAAACAGCGGCTCCGCCAATG---ATGGCGAT---GT 326
BSNT_00494___ 348 GAGATTTTCATATGTTCAAATGGAGGCTGGGCTTCCTCTCCCCATGAGCG 397
|||||.|||.||||||||.||||..|..||.||.|..||.||..|||.||
RBAM_003050__ 327 GAGATATTCCTATGTTCAGATGGCTGACGGTCTGCAGCTTCCGCTGACCG 376
BSNT_00494___ 398 GATTT---------ATGGCTGATG------------------TTTCCTTA 420
|.||| .|||||| || |||.||||
RBAM_003050__ 377 GGTTTTACATCGACCTGGCTG-TGACAGGGGAAGTAACCGGCTTTTCTTA 425
BSNT_00494___ 421 TCAGGTGA--------GATCGTTTATTTCCG----CTATTACGGCGAAGC 458
.||.|.|| ||||...||...||| |.|||.|||..||||
RBAM_003050__ 426 CCATGGGAAGGCTGATGATCTGATAAGACCGGAGACAATTGCGGACAAGC 475
BSNT_00494___ 459 GGGCAGCATCATCAAGCCAAAGAGGGTCGCGGATGTTGAAGAGGCACTTG 508
|||.||||| .||| |.
RBAM_003050__ 476 GGGAAGCAT--------------------------------TGGC---TC 490
BSNT_00494___ 509 CCTTTATCAA-------GAAGGACGTGGAGTTCGACCTTTTGTTTGAGGT 551
.||||.|||| ||||.| ||.||.|||||....||
RBAM_003050__ 491 ACTTTGTCAAACATATTGAAGCA----------GAGCTGTTGTTCACCGT 530
BSNT_00494___ 552 TCTCCATCGTTCTGTTTA----CAAAAACGGAGATGATCAGCCGCATTTG 597
.||.||||..||.||.|| | |.||.|||||..||||.|||.|.
RBAM_003050__ 531 CCTGCATCAGTCCGTCTATGTGC----AGGGGGATGACAAGCCCCATCTC 576
BSNT_00494___ 598 GTGTATGAGCCTGAAT------------GCAGGGCGATTA----CCGTAC 631
||.||||| ||| || ||.||| || ||| ||
RBAM_003050__ 577 GTCTATGA-----AATCGTGTCTCCGACGC-GGCCGA-TATCGGCCG-AC 618
BSNT_00494___ 632 C-------------TGCGGATTTGGTTCAAGAAGAACAAGGAGGAGTTGA 668
| |||.||.|| |||.||| .|.||.|||.||
RBAM_003050__ 619 CTGAAGGAAGAGAATGCAGAATT------AGACGAA-TATGAAGAGCTG- 660
BSNT_00494___ 669 TAATGACGATGATTACAGGGAGCCGGA------GAGCTTTCCTCTCCCTT 712
||.||..|||.|..||||.| || ||.|.|.||||
RBAM_003050__ 661 -------GAAGACGACACGCGGCCGTATGTCCCGA---TTTCACGCCCT- 699
BSNT_00494___ 713 TATTCGAGGGCATC-----CGCGAAAAG----GCCGATC-CTGACAGCAT 752
|||.| || |||||| || ||| .||| |||
RBAM_003050__ 700 ---------GCACCTGAAGCG-GAAAAGATGAGC--ATCAATGA---CAT 734
BSNT_00494___ 753 GATTGGTATTGAAAATGGGTTTGTCAAAGAGCGGGAAGCGGATTTGGGAG 802
|||.||..|..|..|.||.|||...||||||.|||||.|||||.|.||||
RBAM_003050__ 735 GATCGGGCTGCACGACGGTTTTTATAAAGAGAGGGAAACGGATCTTGGAG 784
BSNT_00494___ 803 ATGGGAGAATCGGAATCGTTTGGCG-------------GAATCCGGATGA 839
|.||..|.|||||.||.|..||||| .||||||.|
RBAM_003050__ 785 ACGGCCGTATCGGCATTGCCTGGCGTCCTGAAAAAACAAAATCCGCA--- 831
BSNT_00494___ 840 CCCTGTGTATCAGCCGGCGGATAAAAGCATGGACAG-CTGGTTTAAGGGA 888
|.||..|||||||||.|.||.|| || ||||||.|.|
RBAM_003050__ 832 -------------CGGGAAGATAAAAGCTTTGAAAGTCT-GTTTAAAGAA 867
BSNT_00494___ 889 CGGACTCATCAAGTGCTGAAAACCATCTATAACAAAGAAACAGGAAAACT 938
||||.|.|.||.||..|||||||.||..||.|.||||||.|.||....||
RBAM_003050__ 868 CGGAATGAACACGTATTGAAAACAATGCATGATAAAGAATCGGGCCGGCT 917
BSNT_00494___ 939 CGAAGGCGTCATGTCATTTATGGAGAAAA----AAGGGCCGCTGACAGTA 984
|...||.||.||||||||||| |||| |||| || |
RBAM_003050__ 918 CACCGGGGTGATGTCATTTAT----AAAAGTTGAAGG--CG--------A 953
BSNT_00494___ 985 ACC------TT----GGCAGAGTGTGAAAAAATCGCGCTTCGCTTTCTAT 1024
||| || ||.|||.||..|..|.||.||..|.||||||.|||
RBAM_003050__ 954 ACCGAGGTTTTCCGAGGAAGAATGCCATCACATGGCCATCCGCTTTTTAT 1003
BSNT_00494___ 1025 TTGCTTTATTTCCGAATGCCGATCAATATTT-TAGGATCAGATACGACGA 1073
|.||..|.||||||.|.||.|||||.||||| ..||.||| |||.||.||
RBAM_003050__ 1004 TCGCCATGTTTCCGGAAGCGGATCAGTATTTCCGGGTTCA-ATATGATGA 1052
BSNT_00494___ 1074 ---AAAAGATGAAGAAGAAAACGCAGTCGCT-GGTTTTACGTTTGAAGCG 1119
..|.|||||||.|||||||| | ||..||||.|.|.|.||
RBAM_003050__ 1053 GCCGGATGATGAAGGAGAAAACG-------TGGGACTTACATATAAGGC- 1094
BSNT_00494___ 1120 CATTGT---CACGGAGTTCCGA--TCCGATTTGGGCAGATCAGAATTTGT 1164
|||| ..|||.||| || |.|||||.||..||...|||||.|||
RBAM_003050__ 1095 --TTGTTCGGGCGGCGTT--GATTTGCGATTCGGAGAGGGGAGAATCTGT 1140
BSNT_00494___ 1165 GTCAGCCGCCAGACAGGGGATATCACCGTTTATATGGGACCGGATATTGA 1214
||||||....||||.||...|.||||.||.||||||...|||||.|||||
RBAM_003050__ 1141 GTCAGCAAAAAGACGGGTCTTGTCACTGTATATATGCCGCCGGAAATTGA 1190
BSNT_00494___ 1215 CCCAAATAAGCT---GGCAGCCATTGATCCCATTCCGGCCATTTCAGTTG 1261
.||.||..|||| ||.| ||.||||||.|||| |||| |||
RBAM_003050__ 1191 TCCGAAAGAGCTCCAGGAA---ATCGATCCCGTTCC------TTCA-TTG 1230
BSNT_00494___ 1262 AACAA--------GCCAA---------------GGCTATCTTTTGGCAGC 1288
|||| ||.|| |||.|||
RBAM_003050__ 1231 -ACAATGGAAGAGGCGAAAGACGCGATCCGCCGGGCCATC---------- 1269
BSNT_00494___ 1289 ATTTTAAAGTTGAGCTTGGCTGGGAAAGAGAGTACGGAGATGATGAAGAA 1338
||||..|||||.|..|||||..|....||| |||||.|
RBAM_003050__ 1270 -----AAAGCCGAGCTCGCTTGGGATCGTTGTTAC------GATGACG-- 1306
BSNT_00494___ 1339 CACAGC------------TACCGGCTCGTCTATAAGCCGGTGTTTCCGCG 1376
||||| |||.|||||||.||.||||||||.||.||||.
RBAM_003050__ 1307 -ACAGCTGCGGAAAAGTGTACAGGCTCGTATACAAGCCGGTTTTCCCGCT 1355
BSNT_00494___ 1377 TTTTATCGATGCACATACAGGAGAGCCTGTCTTCAGC--TCATG---GTA 1421
.|||||.||.||.||||||||.|| ||| |||.| .||
RBAM_003050__ 1356 GTTTATTGAGGCTCATACAGGGGA----------AGCGATCACGAGTTTA 1395
BSNT_00494___ 1422 A-------- 1422
|
RBAM_003050__ 1396 ATAGGCTGA 1404
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