Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00491 and RBAM_003030
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_00491___yccK.1.9828.seq
# -bsequence dna-align/RBAM_003030___yccK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00491___yccK-RBAM_003030___yccK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00491___yccK-RBAM_003030___yccK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00491___yccK
# 2: RBAM_003030___yccK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 950
# Identity: 706/950 (74.3%)
# Similarity: 706/950 (74.3%)
# Gaps: 37/950 ( 3.9%)
# Score: 2486.0
#
#
#=======================================
BSNT_00491___ 1 ATGGATCAAACACGTACACTCGGCAAAACGAAGCTGAAGGTGAAGCGGAT 50
||||||.|.||||||||.||.||||..|||.|..|...|||.|||||.||
RBAM_003030__ 1 ATGGATGAGACACGTACGCTGGGCAGGACGGATTTACGGGTAAAGCGTAT 50
BSNT_00491___ 51 CGGATTCGGCGCGAATGCGGTCGGCGGGCATAATCTATTTCCAAATCTAC 100
|||.||.|||||.|||||||||||.||.||||||||.|||||.|||||..
RBAM_003030__ 51 CGGTTTTGGCGCAAATGCGGTCGGAGGACATAATCTGTTTCCGAATCTTA 100
BSNT_00491___ 101 ATGATGAAACAGGGAAGGATTTAGTGCGCACGGCATTGGATGGCGGCGTC 150
||||||||||.||.||.||..|..|.|||||.||||||||.|||||||||
RBAM_003030__ 101 ATGATGAAACGGGAAAAGAACTCATCCGCACAGCATTGGACGGCGGCGTC 150
BSNT_00491___ 151 AATTTTATCGATACCGCTTTTATATATGGATTGGGGCGATCTGAAGAATT 200
||||||||.|||||.||.||||||||.||.||||||||.||.|||||.||
RBAM_003030__ 151 AATTTTATTGATACGGCGTTTATATACGGTTTGGGGCGTTCCGAAGAGTT 200
BSNT_00491___ 201 AATCGGCGAAGTCGT-ACAGGAACGCGGCGTGCGGAATGAG-CTCATCAT 248
||||||.|||||.|| .|| ||.||||||||||||.| .|| |||.|.||
RBAM_003030__ 201 AATCGGTGAAGTTGTCGCA-GAGCGCGGCGTGCGGGA-CAGCCTCGTGAT 248
BSNT_00491___ 249 CGCCACCAAAGGAGCTCATAAAGAAGTGAACGG-CAGCATTGAATTAGAC 297
.||..|.|||||.||.||.|||||.||.||||| || .||.||..|.|||
RBAM_003030__ 249 TGCGTCAAAAGGCGCGCACAAAGAGGTCAACGGACA-AATCGAGCTGGAC 297
BSNT_00491___ 298 AATAGCCGGGAGTTTCTTCGCAGCGAGGTCGAGAAGAGCCTAAAGCGGCT 347
||.|||||.||.|||||.||.||.||||..||.||.|||||.||||||||
RBAM_003030__ 298 AACAGCCGTGAATTTCTCCGGAGTGAGGCGGAAAACAGCCTGAAGCGGCT 347
BSNT_00491___ 348 GAAAACAGATTACATTGATTTGTATTATGTTCACTTTCCGGATGGAAAAA 397
|||||||||....||||||||||||||.||.|||||.||.||.||.||||
RBAM_003030__ 348 GAAAACAGACGTGATTGATTTGTATTACGTCCACTTCCCTGACGGCAAAA 397
BSNT_00491___ 398 CANTCGCT----GAAGTGGCGGGCACTTTGAAAGAGCTGAAGGATGAGGG 443
|| |||| ||||||||||||||..|.|||||.||||||||.||.||
RBAM_003030__ 398 CAC-CGCTCTCCGAAGTGGCGGGCACGCTAAAAGAACTGAAGGACGAAGG 446
BSNT_00491___ 444 GAAAATCAAAGCGATCGGCGCTTCGAACCTC-GATTATCAGCAATTGCAG 492
||||||||.|||.||||||||.||.||.||| |.|| .|.||||.|||||
RBAM_003030__ 447 GAAAATCAGAGCAATCGGCGCGTCCAATCTCAGCTT-CCGGCAACTGCAG 495
BSNT_00491___ 493 GAATTTAATGCTGATGGCTATTTGGAGGTCTTCCAGGCCGAATATTCTCT 542
||.|||||.||.||.||||||||.|||||.||.||..|.||||||||.||
RBAM_003030__ 496 GAGTTTAACGCCGACGGCTATTTAGAGGTTTTTCAATCGGAATATTCACT 545
BSNT_00491___ 543 CATACAGCGTGATGCCGAGAAAGAGCTTCTTCCATACTGTGAAAAACAAG 592
.||.||||||||.||.|||.|.||.||.||.||.||.||||||||..|.|
RBAM_003030__ 546 GATTCAGCGTGAGGCGGAGCATGATCTGCTGCCTTATTGTGAAAAGAACG 595
BSNT_00491___ 593 GCATCTCCTTTATTCCTTACTTTCCGCTTGCGTCCGGACTGCTGACAGGA 642
||||.||||||||||||||.||.||||||||.|||||..|||||||.|||
RBAM_003030__ 596 GCATTTCCTTTATTCCTTATTTCCCGCTTGCTTCCGGCTTGCTGACGGGA 645
BSNT_00491___ 643 AAATTCACGCAAGACACAGTCTTTGATGATTTCAGAAAGGATAAACCTCA 692
||.||.||..||||||||||||||||.||...|.|||||.|.|..||.|.
RBAM_003030__ 646 AAGTTTACAAAAGACACAGTCTTTGAGGACAGCCGAAAGAACAGGCCGCC 695
BSNT_00491___ 693 ATTTCAGGGTGAAACGTTTATCCACAATCTCAAAAAAGTAGATAAGCTGA 742
.||||||||.|||.|.|||..|||.|||||..|...|||.||||||||..
RBAM_003030__ 696 GTTTCAGGGAGAAGCTTTTCACCAAAATCTGGAGCGAGTGGATAAGCTTC 745
BSNT_00491___ 743 AAGCAGTAGCGGAGGAAAAACAAGCGGATACGGCACATGTCGCCTTGGCG 792
..||.||.||||||||||||...|||.|.||.||.|||.||||..|.||.
RBAM_003030__ 746 GGGCCGTTGCGGAGGAAAAAGGGGCGCAGACAGCGCATATCGCACTCGCA 795
BSNT_00491___ 793 TGGCTGTTAACG-AGACCGGCGATTGATGCCATTATTCCAGGAGCTAAAC 841
|||||..|..|| || .|||||.|.|||||.||.|||||.|||||.||||
RBAM_003030__ 796 TGGCTTCTGTCGCAG-TCGGCGGTGGATGCGATCATTCCCGGAGCCAAAC 844
BSNT_00491___ 842 GACCTG---AGC--AATTACAGGATAATCTGAAAAC-CTTGAA----CAT 881
|.||.| ||| ||..|| ||||||.|..| ||| || ||.
RBAM_003030__ 845 GCCCCGTCCAGCTGAAACAC-----AATCTGGACGCGCTT-AATGTGCAG 888
BSNT_00491___ 882 TGAACTCACCGAAGACGAAG-TGAATTTCATCAGCGACATTTTTAAATAA 930
| |.|||||.||.||.| |.|||.| |||||.|||||.|||||.|.|
RBAM_003030__ 889 T----TAACCGAGGATGAGGTTCAATAT-ATCAGTGACATCTTTAAGTGA 933
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