Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00491 and RBAM_003030

See Amino acid alignment / Visit BSNT_00491 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:14
# Commandline: needle
#    -asequence dna-align/BSNT_00491___yccK.1.9828.seq
#    -bsequence dna-align/RBAM_003030___yccK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00491___yccK-RBAM_003030___yccK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00491___yccK-RBAM_003030___yccK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00491___yccK
# 2: RBAM_003030___yccK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 950
# Identity:     706/950 (74.3%)
# Similarity:   706/950 (74.3%)
# Gaps:          37/950 ( 3.9%)
# Score: 2486.0
# 
#
#=======================================

BSNT_00491___      1 ATGGATCAAACACGTACACTCGGCAAAACGAAGCTGAAGGTGAAGCGGAT     50
                     ||||||.|.||||||||.||.||||..|||.|..|...|||.|||||.||
RBAM_003030__      1 ATGGATGAGACACGTACGCTGGGCAGGACGGATTTACGGGTAAAGCGTAT     50

BSNT_00491___     51 CGGATTCGGCGCGAATGCGGTCGGCGGGCATAATCTATTTCCAAATCTAC    100
                     |||.||.|||||.|||||||||||.||.||||||||.|||||.|||||..
RBAM_003030__     51 CGGTTTTGGCGCAAATGCGGTCGGAGGACATAATCTGTTTCCGAATCTTA    100

BSNT_00491___    101 ATGATGAAACAGGGAAGGATTTAGTGCGCACGGCATTGGATGGCGGCGTC    150
                     ||||||||||.||.||.||..|..|.|||||.||||||||.|||||||||
RBAM_003030__    101 ATGATGAAACGGGAAAAGAACTCATCCGCACAGCATTGGACGGCGGCGTC    150

BSNT_00491___    151 AATTTTATCGATACCGCTTTTATATATGGATTGGGGCGATCTGAAGAATT    200
                     ||||||||.|||||.||.||||||||.||.||||||||.||.|||||.||
RBAM_003030__    151 AATTTTATTGATACGGCGTTTATATACGGTTTGGGGCGTTCCGAAGAGTT    200

BSNT_00491___    201 AATCGGCGAAGTCGT-ACAGGAACGCGGCGTGCGGAATGAG-CTCATCAT    248
                     ||||||.|||||.|| .|| ||.||||||||||||.| .|| |||.|.||
RBAM_003030__    201 AATCGGTGAAGTTGTCGCA-GAGCGCGGCGTGCGGGA-CAGCCTCGTGAT    248

BSNT_00491___    249 CGCCACCAAAGGAGCTCATAAAGAAGTGAACGG-CAGCATTGAATTAGAC    297
                     .||..|.|||||.||.||.|||||.||.||||| || .||.||..|.|||
RBAM_003030__    249 TGCGTCAAAAGGCGCGCACAAAGAGGTCAACGGACA-AATCGAGCTGGAC    297

BSNT_00491___    298 AATAGCCGGGAGTTTCTTCGCAGCGAGGTCGAGAAGAGCCTAAAGCGGCT    347
                     ||.|||||.||.|||||.||.||.||||..||.||.|||||.||||||||
RBAM_003030__    298 AACAGCCGTGAATTTCTCCGGAGTGAGGCGGAAAACAGCCTGAAGCGGCT    347

BSNT_00491___    348 GAAAACAGATTACATTGATTTGTATTATGTTCACTTTCCGGATGGAAAAA    397
                     |||||||||....||||||||||||||.||.|||||.||.||.||.||||
RBAM_003030__    348 GAAAACAGACGTGATTGATTTGTATTACGTCCACTTCCCTGACGGCAAAA    397

BSNT_00491___    398 CANTCGCT----GAAGTGGCGGGCACTTTGAAAGAGCTGAAGGATGAGGG    443
                     ||  ||||    ||||||||||||||..|.|||||.||||||||.||.||
RBAM_003030__    398 CAC-CGCTCTCCGAAGTGGCGGGCACGCTAAAAGAACTGAAGGACGAAGG    446

BSNT_00491___    444 GAAAATCAAAGCGATCGGCGCTTCGAACCTC-GATTATCAGCAATTGCAG    492
                     ||||||||.|||.||||||||.||.||.||| |.|| .|.||||.|||||
RBAM_003030__    447 GAAAATCAGAGCAATCGGCGCGTCCAATCTCAGCTT-CCGGCAACTGCAG    495

BSNT_00491___    493 GAATTTAATGCTGATGGCTATTTGGAGGTCTTCCAGGCCGAATATTCTCT    542
                     ||.|||||.||.||.||||||||.|||||.||.||..|.||||||||.||
RBAM_003030__    496 GAGTTTAACGCCGACGGCTATTTAGAGGTTTTTCAATCGGAATATTCACT    545

BSNT_00491___    543 CATACAGCGTGATGCCGAGAAAGAGCTTCTTCCATACTGTGAAAAACAAG    592
                     .||.||||||||.||.|||.|.||.||.||.||.||.||||||||..|.|
RBAM_003030__    546 GATTCAGCGTGAGGCGGAGCATGATCTGCTGCCTTATTGTGAAAAGAACG    595

BSNT_00491___    593 GCATCTCCTTTATTCCTTACTTTCCGCTTGCGTCCGGACTGCTGACAGGA    642
                     ||||.||||||||||||||.||.||||||||.|||||..|||||||.|||
RBAM_003030__    596 GCATTTCCTTTATTCCTTATTTCCCGCTTGCTTCCGGCTTGCTGACGGGA    645

BSNT_00491___    643 AAATTCACGCAAGACACAGTCTTTGATGATTTCAGAAAGGATAAACCTCA    692
                     ||.||.||..||||||||||||||||.||...|.|||||.|.|..||.|.
RBAM_003030__    646 AAGTTTACAAAAGACACAGTCTTTGAGGACAGCCGAAAGAACAGGCCGCC    695

BSNT_00491___    693 ATTTCAGGGTGAAACGTTTATCCACAATCTCAAAAAAGTAGATAAGCTGA    742
                     .||||||||.|||.|.|||..|||.|||||..|...|||.||||||||..
RBAM_003030__    696 GTTTCAGGGAGAAGCTTTTCACCAAAATCTGGAGCGAGTGGATAAGCTTC    745

BSNT_00491___    743 AAGCAGTAGCGGAGGAAAAACAAGCGGATACGGCACATGTCGCCTTGGCG    792
                     ..||.||.||||||||||||...|||.|.||.||.|||.||||..|.||.
RBAM_003030__    746 GGGCCGTTGCGGAGGAAAAAGGGGCGCAGACAGCGCATATCGCACTCGCA    795

BSNT_00491___    793 TGGCTGTTAACG-AGACCGGCGATTGATGCCATTATTCCAGGAGCTAAAC    841
                     |||||..|..|| || .|||||.|.|||||.||.|||||.|||||.||||
RBAM_003030__    796 TGGCTTCTGTCGCAG-TCGGCGGTGGATGCGATCATTCCCGGAGCCAAAC    844

BSNT_00491___    842 GACCTG---AGC--AATTACAGGATAATCTGAAAAC-CTTGAA----CAT    881
                     |.||.|   |||  ||..||     ||||||.|..| ||| ||    ||.
RBAM_003030__    845 GCCCCGTCCAGCTGAAACAC-----AATCTGGACGCGCTT-AATGTGCAG    888

BSNT_00491___    882 TGAACTCACCGAAGACGAAG-TGAATTTCATCAGCGACATTTTTAAATAA    930
                     |    |.|||||.||.||.| |.|||.| |||||.|||||.|||||.|.|
RBAM_003030__    889 T----TAACCGAGGATGAGGTTCAATAT-ATCAGTGACATCTTTAAGTGA    933


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