Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00427 and RBAM_002780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:11
# Commandline: needle
# -asequence dna-align/BSNT_00427___mmuM.1.9828.seq
# -bsequence dna-align/RBAM_002780___mmuM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00427___mmuM-RBAM_002780___mmuM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00427___mmuM-RBAM_002780___mmuM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00427___mmuM
# 2: RBAM_002780___mmuM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 977
# Identity: 704/977 (72.1%)
# Similarity: 704/977 (72.1%)
# Gaps: 58/977 ( 5.9%)
# Score: 2479.0
#
#
#=======================================
BSNT_00427___ 1 ATGAATCCTATCCAACACATATTAGATACATACCCGCTTATTGTGCTAGA 50
||||||||.||...|||.||||||.||..|||||||.||||..|..||||
RBAM_002780__ 1 ATGAATCCCATTACACAAATATTAAATGAATACCCGGTTATGATCATAGA 50
BSNT_00427___ 51 CGGCGCCATGGCGACCGAGCTTGAACGCAAGGGCTGTAATTTGAATGACA 100
||||||.|||||.|||||||||||.||.|.|||||||.||||..|||||.
RBAM_002780__ 51 CGGCGCGATGGCAACCGAGCTTGAGCGGATGGGCTGTGATTTACATGACG 100
BSNT_00427___ 101 GTCTGTGGTCGGCAAAAATCCTGATGGAAGA-GCCAAATCTGATTAAACA 149
.||||||||||||.|||||.||..||| ||| ||||.|.|||||.|||||
RBAM_002780__ 101 ATCTGTGGTCGGCCAAAATTCTTTTGG-AGAGGCCAGAACTGATCAAACA 149
BSNT_00427___ 150 AGTACATACTGATTATTTCGCGGCAGGCGCCGATTGTGCAATCACTGCCA 199
.||.|||.|.||.|||||.||.||.|||||.|||||.||.|||||.||||
RBAM_002780__ 150 GGTGCATGCAGAATATTTTGCCGCCGGCGCTGATTGCGCGATCACCGCCA 199
BSNT_00427___ 200 GCTATCAGTCTACATTTGAAGGCTTTGCCGCACGCGGGCTGAGCGAAGCG 249
|.|||||.||.|||.|||||||.|||||.||.|||||..|....|||.|.
RBAM_002780__ 200 GTTATCAATCGACAATTGAAGGATTTGCAGCGCGCGGCATCCCGGAAACC 249
BSNT_00427___ 250 GAAGCACGCCGGCTCATCGAGTTGTCCGTCAG-CATC----------GCA 288
||.||....||.||||| |||| |||| ||.
RBAM_002780__ 250 GATGCGATACGTCTCAT-----------TCAGACATCTGTTGAACTTGCC 288
BSNT_00427___ 289 GCTGAAGCACGTGATGAATTTTGGTCGCTTGAAGAGAACCGTTTGAATCG 338
||..|||||||.||||||||||||.|||.||||||.||||||||..|.||
RBAM_002780__ 289 GCACAAGCACGCGATGAATTTTGGGCGCATGAAGAAAACCGTTTACACCG 338
BSNT_00427___ 339 GCCAAAACCGATCATTGCGGCTTCTGTAGGCCCTTATGGCGCTTATCTTG 388
|||.|||||..|..|.||.||||||.|.||.|||||.|||||....||.|
RBAM_002780__ 339 GCCCAAACCTTTGGTCGCCGCTTCTATCGGGCCTTACGGCGCGAGCCTCG 388
BSNT_00427___ 389 CAGACGGGTCTGAGTATCGCGGCAACTACGCAATATCAGAAGATGAACTG 438
|.|||||.||.||.||||||||..|.||||.|.|..|.||.|||||.|||
RBAM_002780__ 389 CTGACGGCTCAGAATATCGCGGGCATTACGGACTGACGGAGGATGAGCTG 438
BSNT_00427___ 439 ATTGAATTTCATCGCCCCCGGATGAAGGCGCTGATTGAAGCCGGAGCTGA 488
||....|||||.||||||||||||||.||.||.||.|||.||||.||.||
RBAM_002780__ 439 ATCAGCTTTCACCGCCCCCGGATGAAAGCCCTTATAGAATCCGGCGCCGA 488
BSNT_00427___ 489 TGTATTGGCATGCGAAACGATTCCGTGTCTGACTGAAGCCAAAGCGATTG 538
|.|.|||||.||.||.||.||||||||||||.|.|||||.|||||||
RBAM_002780__ 489 TCTTTTGGCCTGTGAGACCATTCCGTGTCTGTCAGAAGCAAAAGCGA--- 535
BSNT_00427___ 539 TTC----GGCTGTTGAAGGAATTTCCTGAAACGTATGCATGGATCAGCTT 584
|| |||||.||.|||||||.||.|..||.|||||||||||||||||
RBAM_002780__ 536 -TCACAAGGCTGCTGGAGGAATTCCCCGGCACTTATGCATGGATCAGCTT 584
BSNT_00427___ 585 CAGTGCTAAAGACGGCCTGCATATCAGTGACGGAACACC----TGCAGCT 630
|||.||.||||||||.|.|||||||||.||.||.||.|| | |.
RBAM_002780__ 585 CAGCGCCAAAGACGGACGGCATATCAGCGAAGGCACGCCAATTT----CC 630
BSNT_00427___ 631 GACTGCGCATCATGGCTTGA----TGAACACCGCCAAATTGCAGCACTCG 676
||.|||||..|...|||||| || |.|||||||.|||||..|||
RBAM_002780__ 631 GAATGCGCGGCCCTGCTTGACTCCTG----CAGCCAAATCGCAGCGATCG 676
BSNT_00427___ 677 GCATCAACTGCACGCCGCTTCAGCATATCCCTTCCTTGATAGAGGAGTTA 726
|||||||||||||.|||.||.|.|||||.||..|..|||||||.|| |
RBAM_002780__ 677 GCATCAACTGCACACCGATTGAACATATTCCGCCGCTGATAGAAGA---A 723
BSNT_00427___ 727 A--AAAAGAACA-CGTCAAAACCGATCATTGTCTACCCGAATTCAGGTGA 773
| |||.|..|| |.||.||||||||.||.|.|||.|||||.||.||.||
RBAM_002780__ 724 ATCAAACGGGCAGCATCCAAACCGATTATCGCCTATCCGAACTCCGGCGA 773
BSNT_00427___ 774 GCAATATGATCCGGAAACAAAAACATGGAACGGCGCAGCATGCGCAGAAT 823
.||||||||.||.|..||||||||.|||||.||||||||.||||.|.|..
RBAM_002780__ 774 ACAATATGACCCAGTGACAAAAACCTGGAAAGGCGCAGCGTGCGAAAACA 823
BSNT_00427___ 824 CTTACGGGGCGAGCGCCCGCA--CCTGGCATGAAAAAGGAGCGAGGCTGA 871
.||.|||....|||| |||| .||||.|.|||||.||.|.|||.||||
RBAM_002780__ 824 ATTTCGGAAAAAGCG--CGCAAGGCTGGTACGAAAACGGCGTGAGCCTGA 871
BSNT_00427___ 872 TTGGGGGCTGCTGTCGGACAAAACCCGAAAATATTCAAGAAATTGCGGCT 921
|.||.||||||||.|||||.|||||||...|.|||||.|..|||||.|.|
RBAM_002780__ 872 TCGGCGGCTGCTGCCGGACGAAACCCGCGGACATTCAGGCCATTGCCGAT 921
BSNT_00427___ 922 TGGGCCCGCTCTTTAAAAACAACTTGA 948
||||||....|.|||||||||||||||
RBAM_002780__ 922 TGGGCCAAGACCTTAAAAACAACTTGA 948
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