Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00426 and RBAM_002770
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:11
# Commandline: needle
# -asequence dna-align/BSNT_00426___ybgF.1.9828.seq
# -bsequence dna-align/RBAM_002770___ybgF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00426___ybgF-RBAM_002770___ybgF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00426___ybgF-RBAM_002770___ybgF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00426___ybgF
# 2: RBAM_002770___ybgF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1430
# Identity: 1037/1430 (72.5%)
# Similarity: 1037/1430 (72.5%)
# Gaps: 109/1430 ( 7.6%)
# Score: 3833.0
#
#
#=======================================
BSNT_00426___ 0 -------------------------------------------------- 0
RBAM_002770__ 1 ATGAACAACAAGAACGAGACGAATTTTCAGAGAAGTATGAAAAGCAGACA 50
BSNT_00426___ 1 -------ATGCTTTC-CTTGGGAGGTGTCATCGGAACCGGGCTGTTTTTA 42
|||||.|| ||| ||||||||.||||||||.||||||||||||
RBAM_002770__ 51 CCTCTTTATGCTATCACTT-GGAGGTGTGATCGGAACGGGGCTGTTTTTA 99
BSNT_00426___ 43 AGCTCAGGTTATACCATTCAGCAAGCAGGCCCGGCCGGAACGATACTCGC 92
|||||.||.|||||||||||.||.||.||.|||||.||.||.||..||||
RBAM_002770__ 100 AGCTCTGGGTATACCATTCATCAGGCGGGTCCGGCGGGCACCATTTTCGC 149
BSNT_00426___ 93 CTACTTAGTCGGTGCCGGCATCGTCTATCTGGTCATGCTCTGCCTCGGTG 142
.|||.|..|.||.||.||||||||||||||.||||||||.|||||.||||
RBAM_002770__ 150 TTACCTTTTGGGCGCGGGCATCGTCTATCTTGTCATGCTTTGCCTTGGTG 199
BSNT_00426___ 143 AGCTGTCAGTCGCCATGCCTGTGACCGGCGCCTTTCACACCTATGCAGCC 192
|.||||||||.||||||||.|||||.|||||.||.||||||||| ||.
RBAM_002770__ 200 AACTGTCAGTGGCCATGCCGGTGACGGGCGCATTCCACACCTAT---GCG 246
BSNT_00426___ 193 AAA---TACATAGGGCCGGGCACCGGATTTACGGTCGCTTGGCTGTACTG 239
||| ||.||.|||||.|..||.||.||||||||.||.|||||||||||
RBAM_002770__ 247 AAAACCTATATCGGGCCCGCGACGGGCTTTACGGTAGCATGGCTGTACTG 296
BSNT_00426___ 240 GCTGACATGGACCGTGGCATTGGGATCAGAATTCACAGCAGCCGGCCTGT 289
||||||.|||.|.|||||..||||.||.||||||||.||.|||||.||.|
RBAM_002770__ 297 GCTGACGTGGGCGGTGGCGCTGGGCTCTGAATTCACGGCGGCCGGGCTTT 346
BSNT_00426___ 290 TAATGCAGCGCTGGTTCCCCCATACATCGGTTTGGATGTGGAGTGCCGTC 339
|.||||||||.||||||||.|||||.||.|||||||||||||||||.||.
RBAM_002770__ 347 TCATGCAGCGTTGGTTCCCGCATACTTCAGTTTGGATGTGGAGTGCGGTA 396
BSNT_00426___ 340 TTTGCGCTGTTCATTTTCTTGCTTAACGCATTTTCGGTCAAGTTTTTCGC 389
||.||.||.|||||.||.||..|.|||||.||.||.||.||.|||||.||
RBAM_002770__ 397 TTCGCTCTTTTCATCTTTTTATTAAACGCCTTCTCCGTGAAATTTTTTGC 446
BSNT_00426___ 390 TGAATCAGAATTTTGGTTTTCCAGCATCAAAGTATTAGCCATTGTATTAT 439
||||||.||.||||||||.||.|||||.|||||.||||||||..||.|.|
RBAM_002770__ 447 TGAATCGGAGTTTTGGTTCTCAAGCATTAAAGTCTTAGCCATCTTACTGT 496
BSNT_00426___ 440 TTATTCTTTTAGGCGGCTCTGCCATGTTTGGCATCATTCCGATCAAAGGC 489
|||||.|.||.|||||..|.||.|||||.||||||.|.|||||.|||.||
RBAM_002770__ 497 TTATTTTATTGGGCGGAGCGGCGATGTTCGGCATCGTCCCGATGAAAAGC 546
BSNT_00426___ 490 GGAGAAGCCGCTCCGATGCTGTCCAACTTCATGGCGGAAGGCG---GGCT 536
||.||.|||||.||.||||||||.|||||.| ||||.|||| |.||
RBAM_002770__ 547 GGTGAGGCCGCACCTATGCTGTCGAACTTTA---CGGATGGCGGCAGCCT 593
BSNT_00426___ 537 TTTTCCAAATGGATTTGTCCCGATTTTGATGACGATGCTGTCCGTTAATT 586
||||||||||||.|||.|||||||..|||||||||||||.||.||.||.|
RBAM_002770__ 594 TTTTCCAAATGGCTTTTTCCCGATACTGATGACGATGCTTTCAGTAAACT 643
BSNT_00426___ 587 TTGCCTTTTCGGGAACGGAACTAATCGGAATCGCAGCCGGTGAAAGCGTT 636
||||.|||||.||.||||||.|.|||||||||||.||.||.|||||||..
RBAM_002770__ 644 TTGCTTTTTCAGGGACGGAATTGATCGGAATCGCCGCAGGGGAAAGCGCC 693
BSNT_00426___ 637 GATCCTGACAAGACAATACCAAAAGCG----ATTAAAACAACGGTCTGGC 682
|||||.||.||.||..|.|| ||| |||||.||.||.|||||||
RBAM_002770__ 694 GATCCGGAAAAAACCGTTCC----GCGCGCCATTAAGACCACAGTCTGGC 739
BSNT_00426___ 683 GTCTCTCACTCTTCTTTGTCGGAACAATTTTTGTGCTGTCAGGGCTGAT- 731
|.||..|.||.||||||.|.|||||.||||||||||||||||||.||.|
RBAM_002770__ 740 GGCTGGCGCTTTTCTTTATAGGAACGATTTTTGTGCTGTCAGGGATGGTC 789
BSNT_00426___ 732 TCCGATTCAA-GATGCAGGTGTCATCAAAAGCCCGTTTGTCGCTGTCTTT 780
||| .|||| ||.||.|||||.||..||||||||||.|||.|.||.|||
RBAM_002770__ 790 TCC--ATCAAGGAAGCCGGTGTGATTGAAAGCCCGTTCGTCACGGTATTT 837
BSNT_00426___ 781 GACAGAGTCGGTGTACCATACGCAGCCGATATCATGAACTTTGTTATCCT 830
|||||||||||.||.||.||.||.||||||.|.|||||.||.||.||..|
RBAM_002770__ 838 GACAGAGTCGGCGTGCCTTATGCGGCCGATCTGATGAATTTCGTCATTTT 887
BSNT_00426___ 831 GACAGCGATCCTGTCAGCGGCTAATTCCGGACTCTACGCTTCTTCCCGGA 880
.||.|||.|.|||||.|||||.|||||.||.||.|||||.||.||.||.|
RBAM_002770__ 888 AACGGCGCTTCTGTCTGCGGCCAATTCAGGGCTGTACGCGTCATCACGTA 937
BSNT_00426___ 881 TGCTGTGGTCTTTATCAAAAGAA----AAAACGCTTCATCCGACATTTGC 926
||||||||||..|.||.|||||| | |||||||||..|.|||||
RBAM_002770__ 938 TGCTGTGGTCCCTGTCTAAAGAAGGGGA----GCTTCATCCCGCCTTTGC 983
BSNT_00426___ 927 AAAGCTGACGTCAAAAGGAACCCCTTTTAACGCGCTGGTGTTCAGCATGA 976
.|.||||||.||.|||||.|..|||||||||||.|||.|.|||||.||||
RBAM_002770__ 984 CAGGCTGACCTCTAAAGGCATTCCTTTTAACGCTCTGATCTTCAGTATGA 1033
BSNT_00426___ 977 TCGGCGGCATTCTGTCGTTGCTGTCCAGCGTATTTGCGCCAGACACTGTA 1026
||||||||||||||||||||.||||.|||||||||||..|.||.||.||.
RBAM_002770__ 1034 TCGGCGGCATTCTGTCGTTGTTGTCAAGCGTATTTGCAGCGGATACAGTC 1083
BSNT_00426___ 1027 TACGTTGTGCTCGTGTCGATTTCCGGTTTTGCCGTCGTTGTCGTGTGGAT 1076
||..||||.|||||.||..|.||.||.|||||.||.||.|..||||||||
RBAM_002770__ 1084 TATCTTGTTCTCGTCTCCGTCTCAGGATTTGCGGTAGTGGCTGTGTGGAT 1133
BSNT_00426___ 1077 GGGAATCGCTGCTTCTCAATTCATGTTCAGAAAACG-----TTATATCGA 1121
|.|.|||||.||.||.|||||..|||||.|||.||| |||.| ||
RBAM_002770__ 1134 GAGCATCGCCGCATCGCAATTTTTGTTCCGAAGACGGTTTCTTACA--GA 1181
BSNT_00426___ 1122 AGCGGGAAACAAGGTTACTGATTTGAAATACAGAACCCCTTTGTATCCGT 1171
| ||..||.||.||.|.||.|||||||||||.||.||....||||||.
RBAM_002770__ 1182 A---GGGCACCAGCTTTCAGACTTGAAATACAGGACGCCGGGATATCCGG 1228
BSNT_00426___ 1172 TCGTGCCGATTGCTGCGTTCCTGTTATGCCTGGCTTCCGTTGTTGGCATT 1221
.|||.|||||.||.||.||.||..|.|||||.||.|||..|.|.|||||.
RBAM_002770__ 1229 CCGTACCGATAGCGGCCTTTCTCCTGTGCCTCGCCTCCTGTATCGGCATC 1278
BSNT_00426___ 1222 GCCTTTGATCCGAATCAAAGAATCGCACTCTATTGCGGCGTTCCATTTAT 1271
||.|||||||||||.||....|||||.||.||||||||..||.|||||||
RBAM_002770__ 1279 GCTTTTGATCCGAACCAGGCCATCGCCCTTTATTGCGGAATTGCATTTAT 1328
BSNT_00426___ 1272 GGCCATTTGCTATGCAATATATTATGTAAAAAACCGCAAAAGC-CAGCCG 1320
||||.|||||||..|....|||||..|.||||||||.|||||| .||||.
RBAM_002770__ 1329 GGCCGTTTGCTACACCGCTTATTACTTGAAAAACCGGAAAAGCAGAGCCC 1378
BSNT_00426___ 1321 GC-TGCTGATATGACTT--ATTCAAAATAA 1347
|| ||| |.|.|.| |.||..|||||
RBAM_002770__ 1379 GCGTGC----AAGCCGTAAAATCCCAATAA 1404
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