Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00366 and RBAM_002460
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:08
# Commandline: needle
# -asequence dna-align/BSNT_00366___ybxG.1.9828.seq
# -bsequence dna-align/RBAM_002460___ybxG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00366___ybxG-RBAM_002460___ybxG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00366___ybxG-RBAM_002460___ybxG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00366___ybxG
# 2: RBAM_002460___ybxG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1402
# Identity: 1116/1402 (79.6%)
# Similarity: 1116/1402 (79.6%)
# Gaps: 29/1402 ( 2.1%)
# Score: 4414.0
#
#
#=======================================
BSNT_00366___ 1 GTGGCAAATAAAGAATTAAAGAGGGGCCTGGGCGCGCGCCATATTCAGAT 50
||||||||.||||||||||||||.|||.|.||||||||.|||||.|||||
RBAM_002460__ 1 GTGGCAAACAAAGAATTAAAGAGAGGCTTAGGCGCGCGTCATATACAGAT 50
BSNT_00366___ 51 GATCGCCTTGGGCGGTACAATCGGTGTTGGCTTGTTTATGGGTTCTGCCA 100
|||.||..|||||||.||.||||||||.||.||.||.|||||.||..|||
RBAM_002460__ 51 GATTGCGCTGGGCGGCACGATCGGTGTCGGTTTATTCATGGGGTCATCCA 100
BSNT_00366___ 101 GCACGATTTCATGGACTGGCCCATCTGTCCTTCTGGCTTATGCAATATGC 150
|||||||...||||||.||.||.||||||||.|||||||||||.||.|..
RBAM_002460__ 101 GCACGATCGGATGGACCGGGCCGTCTGTCCTGCTGGCTTATGCGATCTCG 150
BSNT_00366___ 151 GGAATTTTTATCTTTTTTATTATGCGTGCGATGGGTGAAATGCTGTATGT 200
||.||.||||||||||||||.||||||||||||||.||||||||.|||||
RBAM_002460__ 151 GGTATCTTTATCTTTTTTATCATGCGTGCGATGGGCGAAATGCTCTATGT 200
BSNT_00366___ 201 CGAGCCGAGCACAGGTTCTTTTGCGACGTTCGGCCATCAATATATTCATC 250
.||||||||.|||||.||.||||||||.|||||||||.|.|||||.||||
RBAM_002460__ 201 AGAGCCGAGTACAGGGTCGTTTGCGACATTCGGCCATAAGTATATACATC 250
BSNT_00366___ 251 CGATGGCAGGTTATATAACAGCATGGAGCAACTGGTTCCAGTGGATTATC 300
||.|.||.||.|||||.||.||.||||||||||||||.||.|||.|.|||
RBAM_002460__ 251 CGTTAGCCGGCTATATGACGGCGTGGAGCAACTGGTTTCAATGGGTGATC 300
BSNT_00366___ 301 GTCGGCATGTCAGAAATTATCGCTGTCGGTTCTTATATGAAGTATTGGTT 350
|||||.|||||.|||||||||||.||||||||.||||||||.||||||||
RBAM_002460__ 301 GTCGGGATGTCTGAAATTATCGCCGTCGGTTCGTATATGAAATATTGGTT 350
BSNT_00366___ 351 CCCGGATTTGCCTGCTTGGATACCTGGTATCGTGGCAATGGTGATTCTTG 400
.||.|||.||||.||.|||||.||.||.||..|.||.||||..|||||.|
RBAM_002460__ 351 TCCTGATCTGCCGGCATGGATTCCCGGCATTATCGCCATGGCCATTCTCG 400
BSNT_00366___ 401 GTGCGGCGAATTTAATTTCTGTTAAGTCGTTTGGCGAATTTGAGTTTTGG 450
|||||||||||||||||||.||.||.||.||.||.||.|||||.||||||
RBAM_002460__ 401 GTGCGGCGAATTTAATTTCGGTAAAATCTTTCGGTGAGTTTGAATTTTGG 450
BSNT_00366___ 451 TTTGCGATGATTAAAATCGTGACGATTATCTTGATGATTATTGCGGGAAT 500
|||||.|||||.|||||.||.||.|||||..||||||||.|.||.|||||
RBAM_002460__ 451 TTTGCCATGATCAAAATTGTCACCATTATTCTGATGATTGTGGCCGGAAT 500
BSNT_00366___ 501 CGGAATTATTTTCTTCGGTTTTGGCAATGGCGGAGATGCGATCGGTTTGT 550
|||||||||||||||||||||.||.||.||.||..||||||||||.||.|
RBAM_002460__ 501 CGGAATTATTTTCTTCGGTTTCGGTAACGGAGGGCATGCGATCGGATTAT 550
BSNT_00366___ 551 CGAACCTGTGGTCACACGGGGGCTTCTTTGCAGGA--GGTTTCTCAGGTT 598
|.||..|.|||||.|||||.||.|||||| |.|| |||||.|||||.|
RBAM_002460__ 551 CTAATTTATGGTCGCACGGCGGTTTCTTT--ACGAATGGTTTTTCAGGAT 598
BSNT_00366___ 599 TCTTCTTTGCACTGTCTCTTGTCATTGCAGCCTATCAAGGAGTTGAGCTG 648
|.||||||||..|||||.|.||..||||.|||||||||||.||.||||||
RBAM_002460__ 599 TTTTCTTTGCCTTGTCTTTGGTTGTTGCGGCCTATCAAGGGGTCGAGCTG 648
BSNT_00366___ 649 ATCGGGATTACAGCGGGTGAAGCGAAGGACCCGCAAAACACGCTAAGAAA 698
|||||||||||.||.||.|||||||||||.||||||||.|||||..|||.
RBAM_002460__ 649 ATCGGGATTACGGCAGGGGAAGCGAAGGATCCGCAAAAAACGCTGCGAAG 698
BSNT_00366___ 699 TGCGATTCAAAGTATTATCTGGCGTATTTTGATTTTCTACATTGGCGCTA 748
.||||||||.||||||||.|||||.|||||.|||||||||||.||.||.|
RBAM_002460__ 699 CGCGATTCAGAGTATTATTTGGCGGATTTTAATTTTCTACATCGGTGCGA 748
BSNT_00366___ 749 TTTTTGTGATCGTGACGGTGTATCCTTGGGATGAGCTCAACTCACTCGGA 798
||||.||.|||||.||.||.|||||.|||.|||||||..||||||||||.
RBAM_002460__ 749 TTTTCGTAATCGTTACCGTATATCCGTGGAATGAGCTTCACTCACTCGGC 798
BSNT_00366___ 799 AGTCCGTTTGTGTCTACGTTCTCGAAAATCGGAATTACGGCAGCGGCCGG 848
|||||||||||.||.||.||..|||||.||||.||||||||.||||||||
RBAM_002460__ 799 AGTCCGTTTGTTTCGACATTTGCGAAAGTCGGGATTACGGCGGCGGCCGG 848
BSNT_00366___ 849 CATTATTAACTTTGTCGTAATTACTGCGGCAATGTCCGGCTGTAATAGCG 898
..|.|||||||||||.||.|||||.||.||.||||||||.||.||.||||
RBAM_002460__ 849 TTTGATTAACTTTGTTGTGATTACCGCTGCGATGTCCGGATGCAACAGCG 898
BSNT_00366___ 899 GTATTTTCAGCGCGGGCCGCATGCTGTATACACTGGGTGTCAATGGACAA 948
|.||.|||||.|||||.||||||||.||.|||.||||.||.||.|||||.
RBAM_002460__ 899 GGATATTCAGTGCGGGACGCATGCTTTACACATTGGGCGTGAACGGACAG 948
BSNT_00366___ 949 GCACCGAAATTCTTTAAGAAGATTTC-ACGCAATGGTGTGCCGCTGTATG 997
||.|||||||||||||||||..|||| .|| |..|||||||||.|.|..|
RBAM_002460__ 949 GCCCCGAAATTCTTTAAGAAAGTTTCTTCG-AGCGGTGTGCCGATATTCG 997
BSNT_00366___ 998 GCACAATTGCGGTGCTGATCGG-TTTGGCTG-TCGGCGTTGTACTGAACT 1045
|.||..|||||||..|.||||| .||| || ||||.||.||.|||||||
RBAM_002460__ 998 GTACGCTTGCGGTATTAATCGGACTTG--TGATCGGTGTCGTGCTGAACT 1045
BSNT_00366___ 1046 ATATCGCGCCGCCGAAGATCTTTGTCTATGTATACAGCGCAAGCGTGCTC 1095
|.||||||||.|||||.||||||||||||||.||||||||.||.|||||.
RBAM_002460__ 1046 ACATCGCGCCTCCGAAAATCTTTGTCTATGTGTACAGCGCGAGTGTGCTG 1095
BSNT_00366___ 1096 CCAGGGATGATTCCCTGGTTTATCATTTTGATCAGTCATATCGGATTCAG 1145
||.||.||||||||.|||||..|||||||.|||||.|||.||||.|||||
RBAM_002460__ 1096 CCGGGAATGATTCCGTGGTTCGTCATTTTAATCAGCCATCTCGGTTTCAG 1145
BSNT_00366___ 1146 AAAAGCGAAGGGTGCTGCATTAGATAAACATCCATTCAAAATGCCGTTTG 1195
||.|||||||||.||||...|.|||||.|||||.||.||||||||.||||
RBAM_002460__ 1146 AAGAGCGAAGGGCGCTGAGCTTGATAAGCATCCGTTTAAAATGCCTTTTG 1195
BSNT_00366___ 1196 CTCCTTTTACAAACTATTTCACGATTGCTTTCTTGCTGATGGTTCTGGTT 1245
|.||.||||||||||||||.|||||.||||||||.||.|||||..||.|.
RBAM_002460__ 1196 CGCCGTTTACAAACTATTTGACGATCGCTTTCTTACTCATGGTATTGATC 1245
BSNT_00366___ 1246 GGCATGTGGTTTAACGATGATACTCGTATCTCCCTGATTGTAGGCGTGAT 1295
|||||||||||||||.|.|||||.||.||.||..||.||||.||.|||||
RBAM_002460__ 1246 GGCATGTGGTTTAACAAAGATACGCGGATTTCGTTGGTTGTCGGGGTGAT 1295
BSNT_00366___ 1296 TTTCTTAGCGCTTGT---GGTCATTAGTTATTATGTGTTTGGGATTGGCA 1342
||||.|.|||.|||| |||| ||.|||||||.|||.||.||.||||
RBAM_002460__ 1296 TTTCCTGGCGATTGTGACGGTC---AGCTATTATGCGTTCGGTATCGGCA 1342
BSNT_00366___ 1343 AACGCACG-CAGGCCAATTTGACAAAAAGCGA----ACAAGCAGCTGAAT 1387
|.||||.| |.|| || |||||.||| |.|||..||||.||
RBAM_002460__ 1343 AGCGCATGCCTGG------TG--AAAAATCGAAAATAGAAGACGCTGTAT 1384
BSNT_00366___ 1388 AA 1389
||
RBAM_002460__ 1385 AA 1386
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