Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00347 and RBAM_002300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_00347___ybbT.1.9828.seq
# -bsequence dna-align/RBAM_002300___ybbT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00347___ybbT-RBAM_002300___ybbT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00347___ybbT-RBAM_002300___ybbT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00347___ybbT
# 2: RBAM_002300___ybbT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1353
# Identity: 1126/1353 (83.2%)
# Similarity: 1126/1353 (83.2%)
# Gaps: 12/1353 ( 0.9%)
# Score: 4726.0
#
#
#=======================================
BSNT_00347___ 1 ATGGGCAAGTATTTTGGAACAGACGGTGTAAGAGGTGTCGCCAATAGTGA 50
|||||||||||||||||||||||.||||||||||||||.|||||.||.||
RBAM_002300__ 1 ATGGGCAAGTATTTTGGAACAGATGGTGTAAGAGGTGTTGCCAACAGCGA 50
BSNT_00347___ 51 GCTTACACCTGAGCTGGCCTTTAAAGTCGGACGTTTCGGCGGTTATGTGC 100
||||||.||.|||||||||||||||||.||.|||||.|||||||||||.|
RBAM_002300__ 51 GCTTACGCCAGAGCTGGCCTTTAAAGTTGGGCGTTTTGGCGGTTATGTCC 100
BSNT_00347___ 101 TGACAAAAGACAAACAACGTCCAAAAGTGCTGATAGGCCGCGATACACGC 150
||||.|||||.||.||.||.||.|||||||||||.|||||.||||||||.
RBAM_002300__ 101 TGACCAAAGATAAGCAGCGCCCGAAAGTGCTGATCGGCCGTGATACACGT 150
BSNT_00347___ 151 ATCTCCGGCCATATGCTGGAGGGAGCCCTTGTCGCCGGACTTTTATCCAT 200
||||||||.||||||||||||||||||||||||||||||||||||||.||
RBAM_002300__ 151 ATCTCCGGACATATGCTGGAGGGAGCCCTTGTCGCCGGACTTTTATCGAT 200
BSNT_00347___ 201 TGGCGCAGAAGTCATGCGCCTGGGTGTCATTTCTACACCAGGTGTATCTT 250
.||.||.|||||.||||||||.||.||.||||||||.||.||.|||||.|
RBAM_002300__ 201 CGGAGCTGAAGTGATGCGCCTCGGCGTTATTTCTACGCCGGGGGTATCCT 250
BSNT_00347___ 251 ATTTGACAAAAGCGATGGACGCAGAGGCGGGCGTCATGATTTCCGCTTCT 300
||||.||.|||||.|||||.||.|||||||||||||||||.|||||||||
RBAM_002300__ 251 ATTTAACGAAAGCCATGGATGCTGAGGCGGGCGTCATGATCTCCGCTTCT 300
BSNT_00347___ 301 CATAACCCAGTGCAGGATAACGGCATCAAATTCTTTGGGGGAGATGGATT 350
||.|||||.||.|||||||||||.||.|||||.||.||.||.||.||.||
RBAM_002300__ 301 CACAACCCCGTACAGGATAACGGAATTAAATTTTTCGGAGGGGACGGCTT 350
BSNT_00347___ 351 TAAGCTTTCTGATGAACAAGAGGCTGAAATTGAGCGCCTGATGGACGAAC 400
|||||||||||||||.||.|||||.||.|||||.||.||.|||||.||||
RBAM_002300__ 351 TAAGCTTTCTGATGAGCAGGAGGCCGAGATTGAACGTCTCATGGATGAAC 400
BSNT_00347___ 401 CTGAAGATAAGCTGCCAAGACCTGTC-GGAGCAGACCTTGGACTTGTAAA 449
|.||||||||||||||.||||| |.| ||.||.|||||.||.||||||||
RBAM_002300__ 401 CAGAAGATAAGCTGCCGAGACC-GACAGGCGCGGACCTCGGGCTTGTAAA 449
BSNT_00347___ 450 CGATTATTTTGAAGGCGGACAAAAATATCTGCAATTCTTAAAACAGACAG 499
|||||||||||||||||..|||||.|||||||||||.|||||.|||||.|
RBAM_002300__ 450 CGATTATTTTGAAGGCGTTCAAAAGTATCTGCAATTTTTAAAGCAGACGG 499
BSNT_00347___ 500 CTGATGAAGATTTCACAGGCATTCATGTGGCATTGGACTGTGCCCATGGC 549
|.||.|||||||||||||||||||||||.||..|.|||||.||||||||.
RBAM_002300__ 500 CGGACGAAGATTTCACAGGCATTCATGTAGCGCTTGACTGCGCCCATGGT 549
BSNT_00347___ 550 GCAACATCATCCTTGGCGACACACCTGTTTGCTGATTTAGATGCAGATGT 599
||.|||||||||.|.|||||.|||||.|||||.|||.|.|||||.||.||
RBAM_002300__ 550 GCGACATCATCCATTGCGACGCACCTTTTTGCCGATCTCGATGCTGACGT 599
BSNT_00347___ 600 TTCTACAATGGGGACTTCCCCGAACGGATTAAACATTAATGACGGCGTTG 649
.||||||||||||||.||.|||||||||||||||||||||||.|||||.|
RBAM_002300__ 600 ATCTACAATGGGGACGTCTCCGAACGGATTAAACATTAATGATGGCGTCG 649
BSNT_00347___ 650 GTTCGACTCATCCCGAAGCGCTCAGCGCGTTTGTCAAAGAGAAAAACGCG 699
|.||.||.||.||.||||||||.||.||.||.||||||||.||||||||.
RBAM_002300__ 650 GGTCTACACACCCGGAAGCGCTGAGTGCTTTCGTCAAAGAAAAAAACGCC 699
BSNT_00347___ 700 GATCTCGGTCTTGCGTTCGACGGTGACGGCGACCGCCTGATTGCTGTCGA 749
|||.||||.||||||||.|||||.||||||||||||||.||||||||.||
RBAM_002300__ 700 GATATCGGCCTTGCGTTTGACGGAGACGGCGACCGCCTCATTGCTGTTGA 749
BSNT_00347___ 750 TGAAAAAGGAAATATTGTAGACGGCGACCAAATCATGTACATATGCTCAA 799
||||||||||||.||.||.|||||.||.||.||.||||||||||||.|.|
RBAM_002300__ 750 TGAAAAAGGAAACATCGTCGACGGTGATCAGATTATGTACATATGCGCGA 799
BSNT_00347___ 800 AACATCTGAAATCAGAGGGCCGTTTAAAGGATGATACTTTGGTTTCAACC 849
|..||.|||||||||||||.|||.|.|||||||||||..|.||.||.||.
RBAM_002300__ 800 AGTATTTGAAATCAGAGGGTCGTCTGAAGGATGATACCGTCGTATCGACT 849
BSNT_00347___ 850 GTGATGAGCAACCTCGGCTTCTATAAGGCGCTCGAAAAAGAAGGCATCAA 899
|||||||||||||||||.|||||.||.|||||.||||||||||..|||||
RBAM_002300__ 850 GTGATGAGCAACCTCGGTTTCTACAAAGCGCTTGAAAAAGAAGAAATCAA 899
BSNT_00347___ 900 AAGCGTACAGACAGCTGTCGGCGACCGCTACGTAGTAGAAGCAATGAAAA 949
||||||.||.||.||.||||||||||||||.||.||||||||.|||||||
RBAM_002300__ 900 AAGCGTTCAAACGGCAGTCGGCGACCGCTATGTCGTAGAAGCGATGAAAA 949
BSNT_00347___ 950 AAGACGGCTACAACGTCGGCGGAGAGCAGTCAGGACATCTTATTTTCCTT 999
||||||||||.||.||||||||.|||||||||||.||.||||||||||||
RBAM_002300__ 950 AAGACGGCTATAATGTCGGCGGCGAGCAGTCAGGGCACCTTATTTTCCTT 999
BSNT_00347___ 1000 GATTACAACACGACAGGGGACGGTTTATTGTCTGCTATTATGCTGATGAA 1049
|||||||||||.||.||.||||||.|.|||||.||.||.|||||..||||
RBAM_002300__ 1000 GATTACAACACTACCGGCGACGGTCTTTTGTCCGCGATCATGCTTGTGAA 1049
BSNT_00347___ 1050 CACTTTGAAAGCAACAGGCAAGCCGCTGTCAGAGCTTGCAGCTGAAATGC 1099
.||..||||.||..|.|||||..|.||.|||||.|||||.|.|||||||.
RBAM_002300__ 1050 TACGCTGAAGGCGTCCGGCAAAACCCTTTCAGAACTTGCGGATGAAATGA 1099
BSNT_00347___ 1100 AGAAGTTCCCGCAGCTGTTAGTCAATGTGAGAGTGACTGATAAATATAAA 1149
|.||.|||||||||||.|||||.||.||||.||||||.|||||||||||.
RBAM_002300__ 1100 AAAAATTCCCGCAGCTCTTAGTGAACGTGAAAGTGACGGATAAATATAAG 1149
BSNT_00347___ 1150 GTTGAAGAAAATGAAAAAGTAAAAGCAGTTATTTCTGAAGTTGAAAAAGA 1199
||.||||||||.|..||.||.||.||.||||||||||||||.||||||||
RBAM_002300__ 1150 GTAGAAGAAAACGCTAAGGTGAAGGCCGTTATTTCTGAAGTGGAAAAAGA 1199
BSNT_00347___ 1200 AATGAACGGCGACGGCCGGATTTTGGTGCGCCCTTCAGGAACTGAACCGC 1249
|||||||||.||||||||||||||.|||||.||.|||||.||.|||||||
RBAM_002300__ 1200 AATGAACGGAGACGGCCGGATTTTAGTGCGTCCGTCAGGCACCGAACCGC 1249
BSNT_00347___ 1250 TCGTCCGTGTCATGGCTGAAGCGAAGACGAAAGAGCTGTGCGATGAGTAT 1299
|||||||.||.|||||.|||||||..||.||||||||.||.||.||.|||
RBAM_002300__ 1250 TCGTCCGCGTGATGGCCGAAGCGAGAACAAAAGAGCTTTGTGACGAATAT 1299
BSNT_00347___ 1300 GTC-----AATCGCATTGTTGAAGTCGTCCGGTCAGAAATGGGATTAGAG 1344
||| |||| ||.||.|||||.|||.|||||||||||...|||
RBAM_002300__ 1300 GTCACAAAAATC-----GTGGATGTCGTGCGGACAGAAATGGGAGCGGAG 1344
BSNT_00347___ 1345 TAA 1347
||.
RBAM_002300__ 1345 TAG 1347
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