Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00325 and RBAM_002200

See Amino acid alignment / Visit BSNT_00325 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:07
# Commandline: needle
#    -asequence dna-align/BSNT_00325___ybbK.1.9828.seq
#    -bsequence dna-align/RBAM_002200___ybbK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00325___ybbK-RBAM_002200___ybbK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00325___ybbK-RBAM_002200___ybbK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00325___ybbK
# 2: RBAM_002200___ybbK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 472
# Identity:     346/472 (73.3%)
# Similarity:   346/472 (73.3%)
# Gaps:          35/472 ( 7.4%)
# Score: 1291.5
# 
#
#=======================================

BSNT_00325___      1 ATGATTCTAGTCAGTTCCTGCCTTGGAGGCATTGAATGCAGATATAACGG     50
                     |||||..|||||||.||.||.||.||.||.||.||||||||.||||||||
RBAM_002200__      1 ATGATCTTAGTCAGCTCTTGTCTCGGCGGTATCGAATGCAGGTATAACGG     50

BSNT_00325___     51 CTCTCACGCAGCGTCGGAGAAAATCAGAAAACTCGTCGATGAAAAGAAAG    100
                     |||||||||.||.|||||.||||||.|.|.||||||.||.||||||||||
RBAM_002200__     51 CTCTCACGCCGCTTCGGAAAAAATCCGCAGACTCGTAGAAGAAAAGAAAG    100

BSNT_00325___    101 CAGTTATGGCTTGCCCTGAACTTCTCGGCGGCTTCTCTACCCCACGCGAA    150
                     |.|||||||..|||||.||||||.|.|||||||||.|.||.||.||||||
RBAM_002200__    101 CTGTTATGGTCTGCCCCGAACTTTTGGGCGGCTTCACCACTCCCCGCGAA    150

BSNT_00325___    151 CCCGCAGAAATCATAGGAGGCACCGGCGAGGATGTCCTCAATGGAACAGC    200
                     ||.||.||||||||.||.|||||.|||||.||.||.||.||.|||||.||
RBAM_002200__    151 CCGGCGGAAATCATCGGCGGCACGGGCGAAGACGTGCTGAACGGAACGGC    200

BSNT_00325___    201 GAAAATCGTGACAGCTTCAGGAGAAGACGTCACAGAACTATATATGGAAG    250
                     .|.||||||.||.||.||.||.||||||||.||.|...||||||||||.|
RBAM_002200__    201 AAGAATCGTAACGGCATCCGGCGAAGACGTTACGGCTTTATATATGGACG    250

BSNT_00325___    251 GCGCCGCGAAAACATTGGCTTACGCAAAAGAAAT--------CAACGCTT    292
                     ||||.|..|||||.||.||.||||||||||||||        |||||   
RBAM_002200__    251 GCGCGGAAAAAACGTTAGCATACGCAAAAGAAATAGGCGCCGCAACG---    297

BSNT_00325___    293 CTGCCGTCATATTAAAAGAAAACAGTCCATCTTGCGGAAGCGGTTTTATC    342
                          |||||..|.||||||||||||||.||.|||||.|||.|.||||||
RBAM_002200__    298 -----GTCATCCTTAAAGAAAACAGTCCGTCCTGCGGCAGCAGCTTTATC    342

BSNT_00325___    343 TATAACGGCACATTCTCTGGCAAAAAAATCACCGGCAG-CGGAGTAACCG    391
                     |||.|||||||.|||||.||.||||||||.|.||| || |||..|.||..
RBAM_002200__    343 TATGACGGCACTTTCTCAGGAAAAAAAATAATCGG-AGACGGCATCACTT    391

BSNT_00325___    392 CCGCACTGTTAAAACAAGCGGGCTACCGCGTCATTTCGGAAAACGAGCTT    441
                     ||||.||.|||||||..||.||||.|||.||..|.||.|||.|.||    
RBAM_002200__    392 CCGCTCTTTTAAAACGGGCAGGCTGCCGTGTTCTATCAGAAGATGA----    437

BSNT_00325___    442 AACGACAT-------ATTGTAA    456
                           ||       |||.|||
RBAM_002200__    438 ------ATTGGATCAATTATAA    453


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