Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00324 and RBAM_002190

See Amino acid alignment / Visit BSNT_00324 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:07
# Commandline: needle
#    -asequence dna-align/BSNT_00324.1.9828.seq
#    -bsequence dna-align/RBAM_002190___ybbJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00324-RBAM_002190___ybbJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00324-RBAM_002190___ybbJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00324
# 2: RBAM_002190___ybbJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 510
# Identity:     340/510 (66.7%)
# Similarity:   340/510 (66.7%)
# Gaps:          60/510 (11.8%)
# Score: 1069.0
# 
#
#=======================================

BSNT_00324         1 ATGACTCAAGACATTTCTTTATCCTTCTATAAGCCTGAACACTTGC--CC     48
                     |||      ||..|..|..|.|||||.|||||.||.||.||  |||  .|
RBAM_002190__      1 ATG------GATGTAGCCCTGTCCTTTTATAAACCGGAGCA--TGCAGAC     42

BSNT_00324        49 GAGCTCCAATCATTCACGCTCACCAACGATGACAAACGCTTTACCTCCCT     98
                     |.|||..|....||...|||.|...|.||.||.|||...||.||..|.||
RBAM_002190__     43 GGGCTGAACGGGTTTGTGCTGAGTGAAGAAGATAAAAAGTTCACAGCTCT     92

BSNT_00324        99 CCCGAAAGAGGTGCTGTCTCAGGCTCTGGGCATACAGGACCGATACCCGG    148
                     ||||||.||.||.|||.|.||||||||.|.|||.|.|||.||.||||||.
RBAM_002190__     93 CCCGAAGGATGTACTGCCGCAGGCTCTTGTCATCCGGGATCGCTACCCGA    142

BSNT_00324       149 TTGTCATCTTAAAAGACGACCTTCCAGTCGGTTTTTTCATTTTACATGCA    198
                     ..|||||.||||||||.||||..||.|||||||||||.|||||||||.|.
RBAM_002190__    143 CAGTCATTTTAAAAGAAGACCGCCCCGTCGGTTTTTTTATTTTACATACC    192

BSNT_00324       199 TCAAAAGAAACGCTTGCTTCCTATTCTAACAAT-------CCATTTGCTT    241
                     |||||||||||..||||..|.|||||.||||||       ||||||    
RBAM_002190__    193 TCAAAAGAAACCATTGCCCCATATTCGAACAATGTGTCTGCCATTT----    238

BSNT_00324       242 TACTGCTCAGCTCCCTGTCTTTAAACGCTGTGC---ATCACGGAAAAGGC    288
                        ||||.||..|.|||||.|||.|   ||.||   ||||.||||||||.
RBAM_002190__    239 ---TGCTGAGTGCGCTGTCCTTACA---TGCGCCATATCAGGGAAAAGGT    282

BSNT_00324       289 TATGCGAAAAAAGCCATGCTTTTGCTTCCCGCTTTTGTGAGCGGA---TA    335
                     |||||.|||.||||.|||||...|||.|||||||||||   ||.|   ||
RBAM_002190__    283 TATGCCAAACAAGCGATGCTGCAGCTCCCCGCTTTTGT---CGCAAATTA    329

BSNT_00324       336 TTTTCCATGGTGTGACGAAATCAT-CTTGGCCGTCAATCATC-TAAACAT    383
                     .|||||.||||||||.||||||.| ||| ||.||.||.|||| .||.|||
RBAM_002190__    330 CTTTCCTTGGTGTGATGAAATCGTGCTT-GCTGTAAACCATCGCAATCAT    378

BSNT_00324       384 ACGCGCAAAACACCTTTATATGAAAAGCGGG--TTCC-------TTGATA    424
                      ||.|||||..||||.||         |.||  ||||       ||||||
RBAM_002190__    379 -CGTGCAAAGAACCTGTA---------CCGGTCTTCCGGTTTTATTGATA    418

BSNT_00324       425 AAGGACGGCGAAGAATCGGCCCGCTTGGAGAACAGTTGATCCTTCATCAT    474
                     ||||.||.||.||.||||||||..|.||.||||||...||.||.||||||
RBAM_002190__    419 AAGGTCGTCGCAGGATCGGCCCCATCGGCGAACAGCACATTCTGCATCAT    468

BSNT_00324       475 TTCTTATAG-    483
                     ||.||.| | 
RBAM_002190__    469 TTTTTGT-GA    477


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.