Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00320 and RBAM_002170
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:06
# Commandline: needle
# -asequence dna-align/BSNT_00320___ybbF.1.9828.seq
# -bsequence dna-align/RBAM_002170___ybbF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00320___ybbF-RBAM_002170___ybbF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00320___ybbF-RBAM_002170___ybbF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00320___ybbF
# 2: RBAM_002170___ybbF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1409
# Identity: 1013/1409 (71.9%)
# Similarity: 1013/1409 (71.9%)
# Gaps: 82/1409 ( 5.8%)
# Score: 3492.5
#
#
#=======================================
BSNT_00320___ 1 ATGAGCAAAGA---AAATAACTACCA-TCATCTCGCACAGA-AAATCCTT 45
||||||||||| |..| ||.|| ||| ||.|| ||.| |.|||||.
RBAM_002170__ 1 ATGAGCAAAGAGGCATTT---TATCAGTCA-CTGGC-CAAAGATATCCTG 45
BSNT_00320___ 46 GAGCTA-TGCGGAGGAAAATCCAATATTT----CTTCATATACGCATTGC 90
|| |.| |||||.||...|||.||||||| ||| |||.||.||.
RBAM_002170__ 46 GA-CAATTGCGGCGGTTCATCGAATATTTCAGGCTT----TACCCACTGT 90
BSNT_00320___ 91 ATGACACGCCTGCGCATTACGCCTTACGATGAAAGCAAAGCAGATGCTCA 140
||||||||||||.|.|||||.||||..|||.|...||||.|.|||
RBAM_002170__ 91 ATGACACGCCTGAGGATTACACCTTTAGATCAGGACAAAACGGAT----- 135
BSNT_00320___ 141 GGGTTTAA-----GAAA--GCTTGACGGCGTATTGGGGGTCGTTGAAGCT 183
.||.|| |||| |||||||||.|||.|.||.|||||.|||||.
RBAM_002170__ 136 --ATTGAAGCGCTGAAACGGCTTGACGGGGTAATAGGCGTCGTCGAAGCC 183
BSNT_00320___ 184 GAAACCTTACAAATTATCCTCGGCACAGGAGTCGTCAATCATGTTACAGC 233
|||||..|.||.||.||.||||||||.||.||||||||||||||..|.|.
RBAM_002170__ 184 GAAACACTGCAGATCATTCTCGGCACGGGTGTCGTCAATCATGTCGCCGA 233
BSNT_00320___ 234 TGCTTTCTCAAAGCTCGTGTCAGCAG--AAGAAGGTGCCGATGTCAAAGA 281
.||||||.||||.||..||.||.|.| ||.||..| .|||.|.|||||
RBAM_002170__ 234 CGCTTTCGCAAAACTTATGCCATCCGGAAAAAACAT--TGATTTAAAAGA 281
BSNT_00320___ 282 AGCTG-----CGGCCAAAAAGAAAGCCGATATCAATCGAAAAAACGCCAC 326
|||.| ||| ||.|||||||||.||||..||||||||.||||
RBAM_002170__ 282 AGCCGCCTCACGG-----AAAAAAGCCGATCTCAACAGAAAAAACACCAC 326
BSNT_00320___ 327 TCCTTTTAAACT-TTTCTTACGTAAAATTGCCAGCATTTTTATCCCTCTT 375
.||..|.|.||| |||||.| |.|||||..|.|||||.||.||.||.|||
RBAM_002170__ 327 ACCCATCAGACTGTTTCTGA-GAAAAATATCAAGCATCTTCATTCCCCTT 375
BSNT_00320___ 376 ATTCCCGCTCTAGTCGCTTCCGGTTTAATTACTGGGATTACCAAAGCAAT 425
||||||||.||..|.||.||.||||||||.||.||.|||||.|||||..|
RBAM_002170__ 376 ATTCCCGCACTCATTGCATCAGGTTTAATCACCGGTATTACGAAAGCCGT 425
BSNT_00320___ 426 TATTCAAGCAGGCTGGCTCTCTGCAGACTCACAAATTGCGGTTATCCTGA 475
.|||||.||.|||||||||.|...|||.||.|||||.||..||||..|.|
RBAM_002170__ 426 CATTCAGGCCGGCTGGCTCCCGAAAGAATCCCAAATCGCACTTATTTTAA 475
BSNT_00320___ 476 CAGTCATCGGATCAGGGCTGTTCACTTATCTCGGCATTCTCGTCGGTATT 525
|.||.|||||.|||||..|.|||.||||.||||||.|.||.|||||.||.
RBAM_002170__ 476 CGGTTATCGGTTCAGGCTTATTCGCTTACCTCGGCGTCCTTGTCGGCATC 525
BSNT_00320___ 526 AACGCTTCGAAAGAATTTGGCGGGACACCCGCACTTGG-GGCTTTGGCCG 574
||.||..||||.|||||.||||||||||||||..|.|| |||.||| ||
RBAM_002170__ 526 AATGCGGCGAAGGAATTCGGCGGGACACCCGCGATGGGCGGCCTTG--CG 573
BSNT_00320___ 575 GG-ATCTTGATTATCAATCCGGAGATCGCAAAAATCAGTTTATTTGGAGA 623
|| ||.|||||..|.||.||.||||||||.||.||||||||.||.|||||
RBAM_002170__ 574 GGCATATTGATCCTTAACCCTGAGATCGCCAATATCAGTTTGTTCGGAGA 623
BSNT_00320___ 624 AGAGCTTCTCCCGGGCAGGGGAGGTCTGATCGGCGTCCTTTTCGCAGCCA 673
..|.||.|||||.|||||||||||..|.||||||||.||||||||.||..
RBAM_002170__ 624 GAATCTGCTCCCTGGCAGGGGAGGATTAATCGGCGTTCTTTTCGCTGCGG 673
BSNT_00320___ 674 TATTCATTGCTTACACCGAACAATTTATTCGCCGTTTTAT---------- 713
|.||.||.|||||.|||||| ||.|||||
RBAM_002170__ 674 TTTTTATCGCTTATACCGAA------------CGGTTTATCAGAAAGTAC 711
BSNT_00320___ 714 -TCC-TCAATCACTCGATATCATTGTCACACCCACCGTTTCACTGTTAAT 761
||| ||||||..||||.||.||.|||||.||.||..|.||..|..|.||
RBAM_002170__ 712 GTCCATCAATCCATCGACATTATCGTCACGCCTACATTGTCTTTACTTAT 761
BSNT_00320___ 762 CACCGGAATCGTAACGTATGTCGTATTTATGCCTTTAGGCGGATTCATCT 811
||||||..|.||.||.||||||||.|||||.|||...|||||.||.||.|
RBAM_002170__ 762 CACCGGGCTGGTGACATATGTCGTTTTTATCCCTGCGGGCGGTTTTATTT 811
BSNT_00320___ 812 CTGATGCT-ATTACATCCGGCCTTCTGTCCATCCTGGACATCGGCGGCAT 860
||||| || ||||||||.||..|..||||..|.|||.|..|||| ||.|.
RBAM_002170__ 812 CTGAT-CTGATTACATCAGGTTTATTGTCGCTGCTGAATGTCGG-GGGAG 859
BSNT_00320___ 861 CGCT-GCAGGCTTTATTCTGGGCGCAACCTTCCTTCCTCTCGTCGTAACC 909
.||| .||||.|||.|.|||||.||..|||||||.||.||.|||||.|||
RBAM_002170__ 860 TGCTCTCAGGGTTTGTACTGGGAGCCGCCTTCCTGCCGCTTGTCGTCACC 909
BSNT_00320___ 910 GGACTGCATCAAGGCTTGACGCCTGTGCACATGGAACTGATCAATTCAAT 959
||.||||||||.||||||||.||.||.||..|||||.|.|||...|||||
RBAM_002170__ 910 GGCCTGCATCAGGGCTTGACTCCCGTACATTTGGAATTAATCCGATCAAT 959
BSNT_00320___ 960 TGGCAATGATCCTCTGCTCCCTATTTTGGCTATGGGAGGTGCAGGACAGG 1009
.||..||||.||.||.||.||.|||.|.||.||||||||.||.||.||||
RBAM_002170__ 960 CGGAGATGACCCGCTCCTTCCGATTCTCGCGATGGGAGGCGCGGGTCAGG 1009
BSNT_00320___ 1010 TAGGCGCGGCCTTTGCCGTTTTCGTGAAGACGAAAAAAACAACACTGAGG 1059
||||.||||||||.|||.|.||..||||.||.||||||.|..||.|||..
RBAM_002170__ 1010 TAGGGGCGGCCTTCGCCATCTTTATGAAAACAAAAAAAGCCTCATTGAAA 1059
BSNT_00320___ 1060 AAAGCAATCGCCGGCGGGCTTCCATCGGGACTGCTCGGCATTGGTGAACC 1109
|.||||||||.||||||.||||||||.||.||||||||.||.||.||.||
RBAM_002170__ 1060 AGAGCAATCGGCGGCGGACTTCCATCCGGTCTGCTCGGAATCGGAGAGCC 1109
BSNT_00320___ 1110 GCTTATTTTCGGAGTCACGCTGCCGCTTGGCCGTCCGTTTTTAACAGCAT 1159
|||.||.|||||.||||||||.|||||.|||||.||||||||.||.||.|
RBAM_002170__ 1110 GCTCATCTTCGGCGTCACGCTCCCGCTCGGCCGGCCGTTTTTGACGGCGT 1159
BSNT_00320___ 1160 GTTTAGGAGCTGGAATCGGTGGTGCCTTTCAAGCGTATTTTCAAGTAGCC 1209
|||||||.||.||||||||.||.|||||||||||..|||||||.||.||.
RBAM_002170__ 1160 GTTTAGGGGCGGGAATCGGCGGCGCCTTTCAAGCCCATTTTCAGGTGGCT 1209
BSNT_00320___ 1210 ACCATTGCGATTGGTGTCTCCGGACTGCCGCTTTCCTTTCTAGTCCTGCC 1259
||..||.|.||.|||||||||||.||.|||||.||.|||||.||.|.|||
RBAM_002170__ 1210 ACTTTTTCAATCGGTGTCTCCGGCCTTCCGCTCTCGTTTCTCGTACAGCC 1259
BSNT_00320___ 1260 TTCGCAAATCATCCTGTATATCGTTGGGCTCTTTATTTCCTACGCGGCCG 1309
|.|.||||||.|..||||||||.|.||.|||||.||.||.||||||||.|
RBAM_002170__ 1260 TGCTCAAATCGTTTTGTATATCATCGGTCTCTTCATCTCTTACGCGGCGG 1309
BSNT_00320___ 1310 GCTTTTTATTGACCTATGCATTCGGATATAAAGATGAAATGGCTTCTCAG 1359
|||||.|.||.||.|||||.|||||||.|||.|||||.||||||.||.|.
RBAM_002170__ 1310 GCTTTGTCTTCACTTATGCGTTCGGATTTAAGGATGACATGGCTGCTGAA 1359
BSNT_00320___ 1360 TTCGATTAA 1368
||.||.|||
RBAM_002170__ 1360 TTTGAATAA 1368
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