Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00308 and RBAM_002090

See Amino acid alignment / Visit BSNT_00308 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:05
# Commandline: needle
#    -asequence dna-align/BSNT_00308.1.9828.seq
#    -bsequence dna-align/RBAM_002090___ybaA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00308-RBAM_002090___ybaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00308-RBAM_002090___ybaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00308
# 2: RBAM_002090___ybaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 814
# Identity:     423/814 (52.0%)
# Similarity:   423/814 (52.0%)
# Gaps:         242/814 (29.7%)
# Score: 1078.0
# 
#
#=======================================

BSNT_00308         1 TTGAAAGGATCTCTTTCAGAACACAAAGCCGGCAACAGGAGGTTCACGCT     50
                                                                       
RBAM_002090__      0 --------------------------------------------------      0

BSNT_00308        51 GTACCTCCCTCCTTCCTACAGCACAGACAGCGGGGGATTTCCTGCTGTTT    100
                                                                       
RBAM_002090__      0 --------------------------------------------------      0

BSNT_00308       101 ACGTGCAGGATGGCAGTTCTTTGTTCCAAAACCAAATCGAATTA--CTAG    148
                                         |||||...|.|.||.||.||  ||  ||.|
RBAM_002090__      1 --------------------TTGTTTTTAGAACAGATGGA--TAAGCTTG     28

BSNT_00308       149 AAAGCGCCTTT--CAACAGCAAAGGCTCCCTGAACTCGTGCTGATCGGTA    196
                     ||..|...|||  .|||.|  ||..||.||.|||.|..|..|.|||||.|
RBAM_002090__     29 AATCCCAATTTGCGAACGG--AACACTTCCCGAATTGATTTTCATCGGCA     76

BSNT_00308       197 TCGAACCCGAAAACCGGCTTGATGAATACACCCCATGGCCGGCTGCATCA    246
                     ||.||||.|...||.||||.|||||.|||||.||.|||||.||..|.||.
RBAM_002090__     77 TCAAACCGGCTGACAGGCTCGATGAGTACACGCCGTGGCCCGCGCCCTCC    126

BSNT_00308       247 CTCAG---TGATCGGTTCACGGACTTCGGCGG-AATGGGATATCACTATC    292
                     ||.||   ||  ||.|||| .||.|||||||| ||.|||     |...||
RBAM_002090__    127 CTGAGCCCTG--CGTTTCA-TGATTTCGGCGGCAAAGGG-----AGGCTC    168

BSNT_00308       293 TGTCT----GATATAACGAACCAGT--TCATTCCGCTAA---TCGAAGAA    333
                     |.|||    ||..|.||.||  .||  |||||||   ||   |.|||||.
RBAM_002090__    169 TTTCTCGAGGAGCTGACAAA--TGTCATCATTCC---AACTGTAGAAGAT    213

BSNT_00308       334 AACTGGAACGTCAC---------CA--GGGAACCGCAGTCAAGAGGAATG    372
                     |  ||   |.||||         ||  .||||.||      ||||||.||
RBAM_002090__    214 A--TG---CATCACATTTCTGCACATCCGGAAACG------AGAGGACTG    252

BSNT_00308       373 ATCGGTGCCTCATTAGGCGGCCTCATCTCAATGTTCGCCATATTAAAATA    422
                     |||||.||.|||||||||||.||..|.||.||.|.|||.||..||.||.|
RBAM_002090__    253 ATCGGCGCGTCATTAGGCGGACTGTTTTCGATATACGCGATGCTACAAAA    302

BSNT_00308       423 TCCGTCAATGTTCGGGAAAATAGGCTCTATATCAGGTTCATACTGGTACG    472
                     .||...|||.|||||.|.|||.||.|.|||.||.|||||.|.||||||.|
RBAM_002090__    303 GCCTGAAATATTCGGCAGAATCGGTTGTATTTCCGGTTCCTTCTGGTATG    352

BSNT_00308       473 AGAACGCAGCGGAAACCATTCATATAT--------CTTCTTTAAAGC--C    512
                     |.||..||||.||        .|||.|        |.|||||   ||  |
RBAM_002090__    353 AAAAATCAGCAGA--------TTATGTCCGCTCCGCATCTTT---GCGTC    391

BSNT_00308       513 TGGCACTGC-ACGTGTTTTCATGTCTATCGGGAGTGAAGAAGGCTGTG--    559
                     .|||||.|| .|||.|.|..||||||.||||.||....||| ||||.|  
RBAM_002090__    392 CGGCACGGCGGCGTATCTATATGTCTGTCGGCAGCCGCGAA-GCTGAGCA    440

BSNT_00308       560 -AAAAACA--ATCCATTCAGCGACAT-ATGCTGAAAAAAACAAAGCAAGT    605
                      |||||||  |||||  .|.|.|||| ||.|  .|..|||.|||| |.||
RBAM_002090__    441 TAAAAACAACATCCA--AAACAACATGATCC--GACTAAATAAAG-ACGT    485

BSNT_00308       606 TCATCAAAGTCTAAAAGAAAAAGGCTTCACTGAAGACCAGTTGTGTCTTT    655
                     ..|..||||.||.|..|||||||||||..||.||...|||  .|.|||||
RBAM_002090__    486 GTACGAAAGCCTGAGGGAAAAAGGCTTTTCTCAATCTCAG--CTCTCTTT    533

BSNT_00308       656 CA--ATTGAAAAAGGAGCGGTGCACCACCGCAAGTATTTCTGCAAACAGT    703
                     ||  ||.|||.|.||.||.||||||||  .||||          ||..||
RBAM_002090__    534 CACGATCGAAGAGGGCGCCGTGCACCA--TCAAG----------AAGCGT    571

BSNT_00308       704 TCA---------TCAACGC-GCTCGAA--TGGCTATACGGAAAAAACCGC    741
                     |||         ||||.|| ||.|.||  |||||.|||||||||||||||
RBAM_002090__    572 TCAAACGACAATTCAATGCAGCACTAAGCTGGCTGTACGGAAAAAACCGC    621

BSNT_00308       742 TCAACCCTA--TGA    753
                     |||  |.||  |||
RBAM_002090__    622 TCA--CGTAGCTGA    633


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