Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00308 and RBAM_002090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:05
# Commandline: needle
# -asequence dna-align/BSNT_00308.1.9828.seq
# -bsequence dna-align/RBAM_002090___ybaA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00308-RBAM_002090___ybaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00308-RBAM_002090___ybaA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00308
# 2: RBAM_002090___ybaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 814
# Identity: 423/814 (52.0%)
# Similarity: 423/814 (52.0%)
# Gaps: 242/814 (29.7%)
# Score: 1078.0
#
#
#=======================================
BSNT_00308 1 TTGAAAGGATCTCTTTCAGAACACAAAGCCGGCAACAGGAGGTTCACGCT 50
RBAM_002090__ 0 -------------------------------------------------- 0
BSNT_00308 51 GTACCTCCCTCCTTCCTACAGCACAGACAGCGGGGGATTTCCTGCTGTTT 100
RBAM_002090__ 0 -------------------------------------------------- 0
BSNT_00308 101 ACGTGCAGGATGGCAGTTCTTTGTTCCAAAACCAAATCGAATTA--CTAG 148
|||||...|.|.||.||.|| || ||.|
RBAM_002090__ 1 --------------------TTGTTTTTAGAACAGATGGA--TAAGCTTG 28
BSNT_00308 149 AAAGCGCCTTT--CAACAGCAAAGGCTCCCTGAACTCGTGCTGATCGGTA 196
||..|...||| .|||.| ||..||.||.|||.|..|..|.|||||.|
RBAM_002090__ 29 AATCCCAATTTGCGAACGG--AACACTTCCCGAATTGATTTTCATCGGCA 76
BSNT_00308 197 TCGAACCCGAAAACCGGCTTGATGAATACACCCCATGGCCGGCTGCATCA 246
||.||||.|...||.||||.|||||.|||||.||.|||||.||..|.||.
RBAM_002090__ 77 TCAAACCGGCTGACAGGCTCGATGAGTACACGCCGTGGCCCGCGCCCTCC 126
BSNT_00308 247 CTCAG---TGATCGGTTCACGGACTTCGGCGG-AATGGGATATCACTATC 292
||.|| || ||.|||| .||.|||||||| ||.||| |...||
RBAM_002090__ 127 CTGAGCCCTG--CGTTTCA-TGATTTCGGCGGCAAAGGG-----AGGCTC 168
BSNT_00308 293 TGTCT----GATATAACGAACCAGT--TCATTCCGCTAA---TCGAAGAA 333
|.||| ||..|.||.|| .|| ||||||| || |.|||||.
RBAM_002090__ 169 TTTCTCGAGGAGCTGACAAA--TGTCATCATTCC---AACTGTAGAAGAT 213
BSNT_00308 334 AACTGGAACGTCAC---------CA--GGGAACCGCAGTCAAGAGGAATG 372
| || |.|||| || .||||.|| ||||||.||
RBAM_002090__ 214 A--TG---CATCACATTTCTGCACATCCGGAAACG------AGAGGACTG 252
BSNT_00308 373 ATCGGTGCCTCATTAGGCGGCCTCATCTCAATGTTCGCCATATTAAAATA 422
|||||.||.|||||||||||.||..|.||.||.|.|||.||..||.||.|
RBAM_002090__ 253 ATCGGCGCGTCATTAGGCGGACTGTTTTCGATATACGCGATGCTACAAAA 302
BSNT_00308 423 TCCGTCAATGTTCGGGAAAATAGGCTCTATATCAGGTTCATACTGGTACG 472
.||...|||.|||||.|.|||.||.|.|||.||.|||||.|.||||||.|
RBAM_002090__ 303 GCCTGAAATATTCGGCAGAATCGGTTGTATTTCCGGTTCCTTCTGGTATG 352
BSNT_00308 473 AGAACGCAGCGGAAACCATTCATATAT--------CTTCTTTAAAGC--C 512
|.||..||||.|| .|||.| |.||||| || |
RBAM_002090__ 353 AAAAATCAGCAGA--------TTATGTCCGCTCCGCATCTTT---GCGTC 391
BSNT_00308 513 TGGCACTGC-ACGTGTTTTCATGTCTATCGGGAGTGAAGAAGGCTGTG-- 559
.|||||.|| .|||.|.|..||||||.||||.||....||| ||||.|
RBAM_002090__ 392 CGGCACGGCGGCGTATCTATATGTCTGTCGGCAGCCGCGAA-GCTGAGCA 440
BSNT_00308 560 -AAAAACA--ATCCATTCAGCGACAT-ATGCTGAAAAAAACAAAGCAAGT 605
||||||| ||||| .|.|.|||| ||.| .|..|||.|||| |.||
RBAM_002090__ 441 TAAAAACAACATCCA--AAACAACATGATCC--GACTAAATAAAG-ACGT 485
BSNT_00308 606 TCATCAAAGTCTAAAAGAAAAAGGCTTCACTGAAGACCAGTTGTGTCTTT 655
..|..||||.||.|..|||||||||||..||.||...||| .|.|||||
RBAM_002090__ 486 GTACGAAAGCCTGAGGGAAAAAGGCTTTTCTCAATCTCAG--CTCTCTTT 533
BSNT_00308 656 CA--ATTGAAAAAGGAGCGGTGCACCACCGCAAGTATTTCTGCAAACAGT 703
|| ||.|||.|.||.||.|||||||| .|||| ||..||
RBAM_002090__ 534 CACGATCGAAGAGGGCGCCGTGCACCA--TCAAG----------AAGCGT 571
BSNT_00308 704 TCA---------TCAACGC-GCTCGAA--TGGCTATACGGAAAAAACCGC 741
||| ||||.|| ||.|.|| |||||.|||||||||||||||
RBAM_002090__ 572 TCAAACGACAATTCAATGCAGCACTAAGCTGGCTGTACGGAAAAAACCGC 621
BSNT_00308 742 TCAACCCTA--TGA 753
||| |.|| |||
RBAM_002090__ 622 TCA--CGTAGCTGA 633
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