Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00306 and RBAM_002080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:05
# Commandline: needle
# -asequence dna-align/BSNT_00306___ybaS.1.9828.seq
# -bsequence dna-align/RBAM_002080___ybaS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00306___ybaS-RBAM_002080___ybaS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00306___ybaS-RBAM_002080___ybaS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00306___ybaS
# 2: RBAM_002080___ybaS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 998
# Identity: 676/998 (67.7%)
# Similarity: 676/998 (67.7%)
# Gaps: 91/998 ( 9.1%)
# Score: 2355.0
#
#
#=======================================
BSNT_00306___ 1 ------------------------------------------ATGCCGCT 8
||||||||
RBAM_002080__ 1 ATGATGTGGCTTCAGAAGTTGAACCAAGTGTTGGGGAGAATCATGCCGCT 50
BSNT_00306___ 9 GTTGACGCCGACTAGTGTGGTGCTGGGCGTGCTGCTGTCTCAG-TTTTTA 57
.|||||.|||.|.|||||||.|..|||.||||||.|.|||||| .|.|.|
RBAM_002080__ 51 TTTGACTCCGTCAAGTGTGGCGGCGGGTGTGCTGTTATCTCAGCATATCA 100
BSNT_00306___ 58 AATGGGTATGAATGG-----GCTGTGCCTTGGATCTTTGCTTTTATTACG 102
..||| |||| ||||||||.|||||.|||||.||||||||.
RBAM_002080__ 101 GCTGG------ATGGCCGGCGCTGTGCCGTGGATATTTGCATTTATTACA 144
BSNT_00306___ 103 TTTGCAGGCAGTTTGAGCGCGAACTTTCAATCTTTGAGACATGCATTGTC 152
|||.|.||||||.||||.||.||.||||||||..|||..| ||| ||.
RBAM_002080__ 145 TTTACGGGCAGTCTGAGTGCCAATTTTCAATCGCTGAAGC--GCA--GTA 190
BSNT_00306___ 153 TC----ATCCTCTCCCTATGATTCTTGCACTATTCGTTCTTCATATTTTC 198
|| |.||.|||||.|||||..|.|||.|.||.|||||.|||||||||
RBAM_002080__ 191 TCGAGAAGCCGCTCCCGATGATCATGGCATTGTTTGTTCTGCATATTTTC 240
BSNT_00306___ 199 ATGCCGCTTTTTGCTTGGGGCAGCGGCCATCTTATATTTAAAGGTGATCC 248
|||||..|||||||.|||||.|||||||||||.||.||.|..|||||.||
RBAM_002080__ 241 ATGCCTGTTTTTGCATGGGGAAGCGGCCATCTGATTTTCAGCGGTGACCC 290
BSNT_00306___ 249 TTTGACGATTAC----CGGTTTAACATTGGCTGTTGTGATTCCTACGGGG 294
|||.||..|.|| |.|.||| |||.|||.||||||||.||.||.
RBAM_002080__ 291 TTTAACTGTGACGGGGCTGATTA----TGGGTGTGGTGATTCCGACCGGA 336
BSNT_00306___ 295 ATTACAAGCTTGATTTGGGCAGCGATGTACAAAGGGAATGTCGGTTTGAC 344
|||||.||.|||||||||||.||||||||.||.|||||||||||.|||||
RBAM_002080__ 337 ATTACGAGTTTGATTTGGGCTGCGATGTATAAGGGGAATGTCGGATTGAC 386
BSNT_00306___ 345 ACTTTCGATTATTTTAATTGATACTGTGCTGTCACCGCTAATCGTACCGC 394
.||.||.|||||..|..|||||||.|||||.||.||..|.|||||||||.
RBAM_002080__ 387 GCTGTCTATTATCCTGGTTGATACCGTGCTTTCTCCTTTTATCGTACCGT 436
BSNT_00306___ 395 TGAGTCTTTCATTGCTGGCCGGCGCTCAGGTTCACATGGATGTGTGGGGA 444
|.||.||.||..|.|||||.||.||..|.|||||.|||||||||||||||
RBAM_002080__ 437 TAAGCCTGTCTGTCCTGGCGGGGGCGAATGTTCAGATGGATGTGTGGGGA 486
BSNT_00306___ 445 ATGATGAAAGGTCTGATTGTAATGGTCGTGATTCCTTCTTTTTTGGGCAT 494
|||||||||||.|||...|..|||||.||.|||||.||..|....||.||
RBAM_002080__ 487 ATGATGAAAGGGCTGGCGGAGATGGTGGTAATTCCATCCATCGCAGGGAT 536
BSNT_00306___ 495 GCTGTTTAATCAGATGTCATCTCCAGAAAGAACTGCGTCTGTGAGCAGTG 544
|.|..|.||.|||.|.||..|.||.|.|||.|||..|.|..|.|||.||.
RBAM_002080__ 537 GATAGTCAACCAGTTTTCCCCGCCGGTAAGGACTCAGGCAATAAGCCGTT 586
BSNT_00306___ 545 CGCTGTCGCCTTTTTCAAAGCTTTGCTTGATGGCAGTGATTGCGATTAAC 594
|||||||.|||||||||||..|.||..|||||...||.|||||.||||||
RBAM_002080__ 587 CGCTGTCTCCTTTTTCAAAAATCTGTCTGATGATTGTCATTGCCATTAAC 636
BSNT_00306___ 595 AGTTCAGCGATTGCTCCTTATTTCAAATCCATTGATTTGAGATTTGCAGG 644
|||||.|..||.||.||.|||.|||....|.|.|||.|.|.||||||.||
RBAM_002080__ 637 AGTTCGGAAATCGCGCCGTATGTCACGCACGTGGATATCAAATTTGCGGG 686
BSNT_00306___ 645 AATAGCTGTAACGGTATTCTTTATCGCGTTAACAGGCTATGCCGCTGCTT 694
.||.||.|..|.||||||.|||||.||..|.||.||.|||||||..||||
RBAM_002080__ 687 CATCGCAGGCATGGTATTTTTTATTGCCATGACGGGTTATGCCGTGGCTT 736
BSNT_00306___ 695 GGCTGATCGGAAAAATGATGAAAAGGCGGCAAGAGGAAATAGTCTCTCTT 744
||||||||||||.|.|||||||..||.|.||.||.|||||.||.|||||.
RBAM_002080__ 737 GGCTGATCGGAAGACTGATGAAGCGGAGCCAGGATGAAATCGTGTCTCTG 786
BSNT_00306___ 745 ATATTTACGGGAGGGATGAGGAATATTAGTGCCGGCGCAGTTCTTGCCGT 794
||.|.|||.||.||.|||.|.|||||.||.|||||.||.|||||.|||||
RBAM_002080__ 787 ATTTATACAGGGGGCATGCGCAATATCAGCGCCGGAGCCGTTCTCGCCGT 836
BSNT_00306___ 795 TACGTTCTTCCCGTCTCAGGTTGCCGTTCCTGTTGTGATCGGCATGCTGT 844
..|.||.||.||||||||.||.||.|||||.||.||.|||||.|||||.|
RBAM_002080__ 837 GTCTTTTTTTCCGTCTCAAGTGGCGGTTCCGGTCGTCATCGGGATGCTTT 886
BSNT_00306___ 845 TTCAGCAGATATTGGCTGCTTTGTTTGGCTATATGCTGAATCGTTTTGAA 894
|||||||.||..|.||.|||||.||.||||||.||||||..||.||||||
RBAM_002080__ 887 TTCAGCAAATCCTTGCAGCTTTATTCGGCTATTTGCTGAGACGCTTTGAA 936
BSNT_00306___ 895 TTAAAACC---AATGTTGCAGAAAGCATAA------------------ 921
.|.||.|| ..||.||.||.|.|.|.||
RBAM_002080__ 937 CTTAAGCCGGTCGTGATGAAGTATGAAAAAAACCGCTCAGCTACGTGA 984
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