Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00265 and RBAM_001820
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:05
# Commandline: needle
# -asequence dna-align/BSNT_00265.1.9828.seq
# -bsequence dna-align/RBAM_001820___kbaA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00265-RBAM_001820___kbaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00265-RBAM_001820___kbaA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00265
# 2: RBAM_001820___kbaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 680
# Identity: 460/680 (67.6%)
# Similarity: 460/680 (67.6%)
# Gaps: 94/680 (13.8%)
# Score: 1728.0
#
#
#=======================================
BSNT_00265 1 ATGATTCATCTGTTTGGAATTATACATAACAAAATATCGCTGTTCGCGAT 50
RBAM_001820__ 0 -------------------------------------------------- 0
BSNT_00265 51 TTTTGAGGGGATGAATAAAGAAATGAAAAGCCGTGGTTTAGTTCGTTTTT 100
|||||||||||.||..|.|||||.||||
RBAM_001820__ 1 ----------------------ATGAAAAGCCGCGGGCTTGTTCGATTTT 28
BSNT_00265 101 TCTTTTCTATTTTAGCTGTCGGAGCGCTTATCACGAGTATTGTGGGTTTT 150
|||||||.|||||||||||.||.||.|||||.||.||..|.|||||.|||
RBAM_001820__ 29 TCTTTTCGATTTTAGCTGTGGGCGCTCTTATTACAAGCGTCGTGGGATTT 78
BSNT_00265 151 GCTTTAAAATGGGGAGAATATAGAGGGCTGTTTCTTACATTTGAAGCGGG 200
|||.|.||.|||||.||.||.|..|||.|.|||||.|..|||||.||.||
RBAM_001820__ 79 GCTCTGAAGTGGGGGGAGTACAAGGGGTTCTTTCTGAATTTTGAGGCCGG 128
BSNT_00265 201 GCAGATTTTCTCTGTTTTATTTTGGTTTATCGGTGTAGGCATGATTTTCA 250
.|||||||||||.|||.|..|.|||||||||||.||||||||||||||||
RBAM_001820__ 129 TCAGATTTTCTCCGTTCTGATCTGGTTTATCGGGGTAGGCATGATTTTCA 178
BSNT_00265 251 GTGTGATCAGCCAAATGGGTTTTTTCGTGTTTTTAACAGTTCATCGGTTT 300
|||||||||||||.|||||.||.|||||.|||.|.||.||.||.||||||
RBAM_001820__ 179 GTGTGATCAGCCAGATGGGATTCTTCGTTTTTCTTACGGTGCACCGGTTT 228
BSNT_00265 301 GCGCTTGAGATATTAAGGTCCTCCTCTTTGTGGAATTTGCTGCAGTTGTT 350
||.|||||.||..|.||.||...|||..|.||||||.||||.|||.||||
RBAM_001820__ 229 GCCCTTGAAATTCTCAGATCAAGCTCGCTTTGGAATCTGCTTCAGCTGTT 278
BSNT_00265 351 TTTCATCCTGTTTGTTGCTTTTGATTTAATGTACGTGCGTTTTTTATTTT 400
|.||||.||||||||.||||||||||||||||||||..|.|||||.||||
RBAM_001820__ 279 TATCATTCTGTTTGTCGCTTTTGATTTAATGTACGTCAGATTTTTGTTTT 328
BSNT_00265 401 TTGGAGAGAGCGGA-GAATCGCTGGCTGGCTATGCGTGGTTACCGATGTT 449
|.||||||.| ||| ||.|||.|.||.||.|.||..|||.|.|||.||
RBAM_001820__ 329 TCGGAGAGCG-GGATGACTCGATTGCAGGGTTTGTCTGGCTGCCGCTG-- 375
BSNT_00265 450 TTTATTGATCT--------TTGGAGTGATTACAGCTTATATAAAGCAAAA 491
|.||| |.||..||.|.||.||.||||||||.|||||
RBAM_001820__ 376 ------GCTCTGCTTGCCGTCGGCCTGTTGACGGCATATATAAAACAAAA 419
BSNT_00265 492 GCAGTCCTCTAAGAAAACATTTGTGTCATCGTTGTTTTTGATGGTTGTGA 541
|||||||||.||.||.||.||.||.|||||.||.|||||.||||||||.|
RBAM_001820__ 420 GCAGTCCTCAAAAAATACGTTCGTTTCATCATTATTTTTAATGGTTGTTA 469
BSNT_00265 542 TTACCGCATTAGAATGGTTCCCTGCATTAAGAGTAAATGATGAGGACTGG 591
||||.||..|.||||||.|.|||||..||.||||.|||.|||||||||||
RBAM_001820__ 470 TTACAGCGCTTGAATGGGTTCCTGCGCTACGAGTGAATAATGAGGACTGG 519
BSNT_00265 592 CTTTATTTAATGCTTTTTCCGTTAATGGCATGTAATGCCTTCCAATTGCT 641
||||||||.|||||..|||||.|.||||..||.|||||.||.||..||.|
RBAM_001820__ 520 CTTTATTTGATGCTGATTCCGCTGATGGGCTGCAATGCGTTTCAGCTGTT 569
BSNT_00265 642 GATGCTGCCGAAGTTTG--CAGCAAAGTAA 669
.|||||||||||||||| ||| |.||||
RBAM_001820__ 570 AATGCTGCCGAAGTTTGCCCAG--AGGTAA 597
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