Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00240 and RBAM_001610
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:03
# Commandline: needle
# -asequence dna-align/BSNT_00240___secY.1.9828.seq
# -bsequence dna-align/RBAM_001610___secY.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00240___secY-RBAM_001610___secY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00240___secY-RBAM_001610___secY.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00240___secY
# 2: RBAM_001610___secY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1303
# Identity: 1169/1303 (89.7%)
# Similarity: 1169/1303 (89.7%)
# Gaps: 14/1303 ( 1.1%)
# Score: 5320.0
#
#
#=======================================
BSNT_00240___ 1 TTGTTTAAAACAATCTCCAACTTTATGCGTGTGAGTGATATCAGGAATAA 50
||||||||.||||||||||||||||||||||||||||||||..|||||||
RBAM_001610__ 1 TTGTTTAAGACAATCTCCAACTTTATGCGTGTGAGTGATATTCGGAATAA 50
BSNT_00240___ 51 AATCATATTCACTTTACTCATGCTTATCGTCTTTCGCATAGGTGCGTTTA 100
||||||.||.||.|||||||||||||||||||||||||||||||||||||
RBAM_001610__ 51 AATCATTTTTACATTACTCATGCTTATCGTCTTTCGCATAGGTGCGTTTA 100
BSNT_00240___ 101 TTCCTGTGCCTTACGTTAACGCTGAAGCGTTACAGGCGCAGTCTCAA--- 147
|.||||||||.||.||.||.|||.|.||||| ||||.|.|||
RBAM_001610__ 101 TCCCTGTGCCATATGTAAATGCTCAGGCGTT------GCAGACACAAAGT 144
BSNT_00240___ 148 ---ATGGGTGTTTTTGATCTCCTTAATACATTTGGCGGCGGTGCGCTTTA 194
|||||.|||||||||||||||||||||||||||||||||||||||||
RBAM_001610__ 145 TCGATGGGGGTTTTTGATCTCCTTAATACATTTGGCGGCGGTGCGCTTTA 194
BSNT_00240___ 195 CCAATTTTCCATTTTCGCAATGGGAATTACTCCTTATATCACGGCTTCGA 244
.||.||.||||||||.||.|||||||||||.|||||.|||||.|||||.|
RBAM_001610__ 195 TCAGTTCTCCATTTTTGCGATGGGAATTACGCCTTACATCACTGCTTCAA 244
BSNT_00240___ 245 TCATCATTCAGCTGCTTCAGATGGATGTTGTACCGAAGTTTACCGAGTGG 294
|||||||||||||||||||||||||||||||.||||||||||||||||||
RBAM_001610__ 245 TCATCATTCAGCTGCTTCAGATGGATGTTGTGCCGAAGTTTACCGAGTGG 294
BSNT_00240___ 295 TCTAAGCAAGGTGAAGTTGGCCGCCGTAAATTAGCTCAGTTCACAAGGTA 344
|||||||||||||||||.||||||||||||||||||||||||||.||.||
RBAM_001610__ 295 TCTAAGCAAGGTGAAGTCGGCCGCCGTAAATTAGCTCAGTTCACGAGATA 344
BSNT_00240___ 345 CTTTACGATTGTGCTTGGTTTCATCCAAGCGTTAGGTATGTCATATGGAT 394
.||||||||||||||||||||.|||||.||.|||||||||||.||.||.|
RBAM_001610__ 345 TTTTACGATTGTGCTTGGTTTTATCCAGGCATTAGGTATGTCTTACGGGT 394
BSNT_00240___ 395 TCAACAATCTGGCAAACGGTATGCTGATCGAAAAATCCGGTGTATCGACA 444
|.|||||.||||||||||||||||||||.|||||||||||..||||||||
RBAM_001610__ 395 TTAACAACCTGGCAAACGGTATGCTGATTGAAAAATCCGGCATATCGACA 444
BSNT_00240___ 445 TATCTTATCATTGCTTTAGTACTCACTGGCGGAACTGCCTTTTTAATGTG 494
|||||.||.||||||||||||||||||||.||||||||.|||||||||||
RBAM_001610__ 445 TATCTGATTATTGCTTTAGTACTCACTGGAGGAACTGCTTTTTTAATGTG 494
BSNT_00240___ 495 GCTTGGGGAACAAATTACTTCTCATGGAGTAGGCAACGGAATATCGATCA 544
|||.||.||||||||||||||..||||||||||.||||||||.|||||||
RBAM_001610__ 495 GCTGGGAGAACAAATTACTTCCAATGGAGTAGGTAACGGAATTTCGATCA 544
BSNT_00240___ 545 TTATCTTCGCGGGGATTGTGTCTAGTATTCCAAAAACAATTGGGCAAATA 594
|.||||||||||||||||||.||||||||||.|||||..|||||||.||.
RBAM_001610__ 545 TCATCTTCGCGGGGATTGTGGCTAGTATTCCGAAAACTGTTGGGCAGATT 594
BSNT_00240___ 595 TATGAGACTCAATTTGTCGGCAGCAACGATCAGTTGTTTATTCATATTGT 644
|||||||||||||||||||||||||.|||||||.||||||||||||||||
RBAM_001610__ 595 TATGAGACTCAATTTGTCGGCAGCAGCGATCAGCTGTTTATTCATATTGT 644
BSNT_00240___ 645 GAAAGTCGCACTTCTTGTGATTGCGATTTTAGCAGTTATTGTTGGAGTTA 694
.|||.||||..|.||.||||||||.|||||.||.|||||||||||.||||
RBAM_001610__ 645 AAAAATCGCTTTACTGGTGATTGCAATTTTGGCCGTTATTGTTGGTGTTA 694
BSNT_00240___ 695 TTTTCATTCAGCAAGCCGTACGGAAAATTGCGATTCAATATGCTAAA-GG 743
|||||||||||||.||||||||.|||||.||.|||||||||||.||| ||
RBAM_001610__ 695 TTTTCATTCAGCAGGCCGTACGCAAAATCGCAATTCAATATGCAAAAGGG 744
BSNT_00240___ 744 CACAGGTCGTTCACCTGCTGGCGGGGGTCAGTCTACACACCTTCCATTGA 793
|| ||||||||||||||.||||||.||.|||||.||.||||||||..|.|
RBAM_001610__ 745 CA-AGGTCGTTCACCTGTTGGCGGAGGCCAGTCAACTCACCTTCCGCTTA 793
BSNT_00240___ 794 AAGTGAATCCTGCAGGGGTTATTCCGGTAATCTTTGCGGTTGCGTTTTTG 843
||||||||||.||||||||||||||||||||||||||||||||||||.|.
RBAM_001610__ 794 AAGTGAATCCGGCAGGGGTTATTCCGGTAATCTTTGCGGTTGCGTTTCTT 843
BSNT_00240___ 844 ATAACGCCGCGGACGATCGCGTCATTCTTTGGAACAAACGATGTGACAAA 893
||.||||||||.||.|||||||||||.||.|||..||||.||||||||||
RBAM_001610__ 844 ATTACGCCGCGTACTATCGCGTCATTTTTCGGAGAAAACAATGTGACAAA 893
BSNT_00240___ 894 GTGGATTCAAAACAACTTTGATAATACGCATCCGGTGGGTATGGCGATAT 943
||||||||||..|||||||||.|||||.|||||||||||.||||||.|.|
RBAM_001610__ 894 GTGGATTCAAGCCAACTTTGACAATACACATCCGGTGGGCATGGCGGTTT 943
BSNT_00240___ 944 ATGTTGCGTTGATTATTGCCTTTACGTACTTTTATGCTTTTGTACAGGTA 993
||||.||.||.|||||.||||||||||||||.|||||||||||.||||||
RBAM_001610__ 944 ATGTCGCATTAATTATCGCCTTTACGTACTTCTATGCTTTTGTGCAGGTA 993
BSNT_00240___ 994 AACCCTGAACAAATGGCTGATAACCTTAAAAAACAGGGTGGCTATATCCC 1043
||||||||||||||||||||||||||.|||||||||||||||||||||||
RBAM_001610__ 994 AACCCTGAACAAATGGCTGATAACCTAAAAAAACAGGGTGGCTATATCCC 1043
BSNT_00240___ 1044 GGGGGTTCGTCCAGGGAAAATGACTCAAGATAGAATTACGAGCATTTTGT 1093
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001610__ 1044 GGGGGTTCGTCCAGGGAAAATGACTCAAGATAGAATTACGAGCATTTTGT 1093
BSNT_00240___ 1094 ATCGACTTACGTTTGTGGGTTCTATATTCTTAGCCGTGATTTCCATTCTT 1143
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001610__ 1094 ATCGACTTACGTTTGTGGGTTCTATATTCTTAGCCGTGATTTCCATTCTT 1143
BSNT_00240___ 1144 CCTATCTTTTTCATTCAATTCGCTGGATTGCCTCAAAGTGCACAAATTGG 1193
||||||||||||||||||||||||||||||||||||||||||||.|||||
RBAM_001610__ 1144 CCTATCTTTTTCATTCAATTCGCTGGATTGCCTCAAAGTGCACAGATTGG 1193
BSNT_00240___ 1194 CGGAACATCTTTGTTAATTGTTGTCGGGGTAGCCTTGGAGACAATGAAAC 1243
|||||||||.|||||||||||.||||||||||||||||||||||||||.|
RBAM_001610__ 1194 CGGAACATCATTGTTAATTGTCGTCGGGGTAGCCTTGGAGACAATGAAGC 1243
BSNT_00240___ 1244 AACTAGAAAGCCAGTTGGTGAAACGAAACTACCGTGGATTTATGAAAAAC 1293
|.||.||.||||||||.||||||||.||.|||||.||||||||||||||.
RBAM_001610__ 1244 AGCTGGAGAGCCAGTTAGTGAAACGTAATTACCGAGGATTTATGAAAAAT 1293
BSNT_00240___ 1294 TAG 1296
|||
RBAM_001610__ 1294 TAG 1296
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