Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00211 and RBAM_001340

See Amino acid alignment / Visit BSNT_00211 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:00
# Commandline: needle
#    -asequence dna-align/BSNT_00211___ybxF.1.9828.seq
#    -bsequence dna-align/RBAM_001340___ybxF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00211___ybxF-RBAM_001340___ybxF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00211___ybxF-RBAM_001340___ybxF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00211___ybxF
# 2: RBAM_001340___ybxF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 251
# Identity:     215/251 (85.7%)
# Similarity:   215/251 (85.7%)
# Gaps:           4/251 ( 1.6%)
# Score: 907.0
# 
#
#=======================================

BSNT_00211___      1 ATGTCTTATGATAAAGTATCACAGGCCAAATCAATTATTATTGGTACGAA     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001340__      1 ATGTCTTATGATAAAGTATCACAGGCCAAATCAATTATTATTGGTACGAA     50

BSNT_00211___     51 GCAAACAGTGAAAGCTCTAAAGCGAGGTTCAGTAAAGGAAGTAGTCGTTG    100
                     |||||||||||||||||||||.|||||||||||.||||||||.|||||.|
RBAM_001340__     51 GCAAACAGTGAAAGCTCTAAAACGAGGTTCAGTGAAGGAAGTCGTCGTGG    100

BSNT_00211___    101 CAAAAGACGCAGATCCGATACTCACGTCAAGTGTTGTTTCA-CTTGCTGA    149
                     ||||||||||.|||.|..|.||.||..|..|.||| .|.|| ||||| .|
RBAM_001340__    101 CAAAAGACGCGGATTCAGTTCTTACAGCTGGCGTT-ATCCAGCTTGC-AA    148

BSNT_00211___    150 AG-ATCAAGGTATCTCTGTCTCAATGGTTGAATCCATGAAAAAGCTCGGC    198
                     || |.|||..||.|.||||||..|||||.||.||||||||||||||||||
RBAM_001340__    149 AGAACCAAAATACCGCTGTCTGTATGGTGGATTCCATGAAAAAGCTCGGC    198

BSNT_00211___    199 AAAGCCTGCGGAATTGAGGTAGGAGCAGCCGCTGTTGCCATTATTTTATA    248
                     |||||||||||||||||.||.||||||||.||||||||||||||.|||||
RBAM_001340__    199 AAAGCCTGCGGAATTGAAGTGGGAGCAGCAGCTGTTGCCATTATGTTATA    248

BSNT_00211___    249 A    249
                     .
RBAM_001340__    249 G    249


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.