Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00202 and RBAM_001270

See Amino acid alignment / Visit BSNT_00202 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:58
# Commandline: needle
#    -asequence dna-align/BSNT_00202___rplK.1.9828.seq
#    -bsequence dna-align/RBAM_001270___rplK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00202___rplK-RBAM_001270___rplK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00202___rplK-RBAM_001270___rplK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00202___rplK
# 2: RBAM_001270___rplK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 426
# Identity:     415/426 (97.4%)
# Similarity:   415/426 (97.4%)
# Gaps:           0/426 ( 0.0%)
# Score: 2031.0
# 
#
#=======================================

BSNT_00202___      1 GTGGCTAAAAAAGTAGTTAAAGTTGTAAAATTGCAAATTCCTGCTGGAAA     50
                     |||||||||||||||||.||||||||||||||||||||||||||||||||
RBAM_001270__      1 GTGGCTAAAAAAGTAGTAAAAGTTGTAAAATTGCAAATTCCTGCTGGAAA     50

BSNT_00202___     51 AGCTAACCCAGCACCACCAGTTGGACCTGCACTTGGTCAAGCCGGTGTTA    100
                     ||||||||||||.||.|||||||||||||||||.||||||||||||||.|
RBAM_001270__     51 AGCTAACCCAGCGCCGCCAGTTGGACCTGCACTAGGTCAAGCCGGTGTAA    100

BSNT_00202___    101 ACATCATGGGATTCTGTAAGGAGTTTAACGCTCGTACAGCTGACCAAGCT    150
                     |.||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001270__    101 ATATCATGGGATTCTGTAAGGAGTTTAACGCTCGTACAGCTGACCAAGCT    150

BSNT_00202___    151 GGTTTAATCATTCCTGTTGAAATTTCGGTTTACGAAGACCGTTCATTTAC    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001270__    151 GGTTTAATCATTCCTGTTGAAATTTCGGTTTACGAAGACCGTTCATTTAC    200

BSNT_00202___    201 ATTTATTACAAAAACTCCACCTGCTGCAGTATTGCTTAAAAAAGCAGCTG    250
                     ||||||||||||||||||.|||||||||||||||||||||||||||||||
RBAM_001270__    201 ATTTATTACAAAAACTCCGCCTGCTGCAGTATTGCTTAAAAAAGCAGCTG    250

BSNT_00202___    251 GAATTGAGTCTGGTTCTGGTGAACCAAACCGTAATAAAGTGGCAACCGTT    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001270__    251 GAATTGAGTCTGGTTCTGGTGAACCAAACCGTAATAAAGTGGCAACCGTT    300

BSNT_00202___    301 AAGCGCGATAAAGTACGCGAAATCGCTGAAACGAAAATGCCTGACTTAAA    350
                     |||||||||||.||.|||||||||||||||||||||||||||||||||||
RBAM_001270__    301 AAGCGCGATAAGGTTCGCGAAATCGCTGAAACGAAAATGCCTGACTTAAA    350

BSNT_00202___    351 CGCAGCAGACGTTGAAGCGGCAATGCGCATGGTTGAAGGTACTGCCCGCA    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001270__    351 CGCAGCAGACGTTGAAGCGGCAATGCGCATGGTTGAAGGTACTGCCCGCA    400

BSNT_00202___    401 GTATGGGTATTGTAATCGAGGATTAA    426
                     ||||||||||.||.||||||||||||
RBAM_001270__    401 GTATGGGTATCGTTATCGAGGATTAA    426


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.