Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00199 and RBAM_001250

See Amino acid alignment / Visit BSNT_00199 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:58
# Commandline: needle
#    -asequence dna-align/BSNT_00199___secE.1.9828.seq
#    -bsequence dna-align/RBAM_001250___secE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00199___secE-RBAM_001250___secE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00199___secE-RBAM_001250___secE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00199___secE
# 2: RBAM_001250___secE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 180
# Identity:     167/180 (92.8%)
# Similarity:   167/180 (92.8%)
# Gaps:           0/180 ( 0.0%)
# Score: 783.0
# 
#
#=======================================

BSNT_00199___      1 ATGCGTATTATGAAATTCTTTAAAGATGTTGGGAAAGAAATGAAAAAGGT     50
                     |||||.||.||||..|||||||||||||||||||||||||||||||||||
RBAM_001250__      1 ATGCGCATGATGAGTTTCTTTAAAGATGTTGGGAAAGAAATGAAAAAGGT     50

BSNT_00199___     51 AAGCTGGCCTAAAGGAAAAGAGTTAACGCGTTATACCATTACGGTAATTT    100
                     .||||||||||||||.||||||||||||||.|||||.||.|||||.||||
RBAM_001250__     51 TAGCTGGCCTAAAGGCAAAGAGTTAACGCGCTATACGATCACGGTGATTT    100

BSNT_00199___    101 CAACAGTTATCTTTTTTGTTATCTTTTTTGCCCTCCTTGACACAGGAATT    150
                     ||||.|||||||||||||||||||||||||||||||||||.|||||||||
RBAM_001250__    101 CAACGGTTATCTTTTTTGTTATCTTTTTTGCCCTCCTTGATACAGGAATT    150

BSNT_00199___    151 TCTCAATTAATTCGTTTTATAGTTGAATAA    180
                     |||||||||||||||||.||||||||||||
RBAM_001250__    151 TCTCAATTAATTCGTTTAATAGTTGAATAA    180


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.