Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00196 and RBAM_001220

See Amino acid alignment / Visit BSNT_00196 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:58
# Commandline: needle
#    -asequence dna-align/BSNT_00196___yacP.1.9828.seq
#    -bsequence dna-align/RBAM_001220___yacP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00196___yacP-RBAM_001220___yacP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00196___yacP-RBAM_001220___yacP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00196___yacP
# 2: RBAM_001220___yacP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 521
# Identity:     421/521 (80.8%)
# Similarity:   421/521 (80.8%)
# Gaps:          16/521 ( 3.1%)
# Score: 1735.0
# 
#
#=======================================

BSNT_00196___      1 ATGGATATCCTGTTAGTAGACGGGTACAACATGATTGGAGCCTGGCCGCA     50
                     |||||.|||||||||||||||||.|||||||||||||||||.||||||||
RBAM_001220__      1 ATGGACATCCTGTTAGTAGACGGATACAACATGATTGGAGCTTGGCCGCA     50

BSNT_00196___     51 GCTGAAGGATTTAAAAGCGAACAGTTTTGAAGAGGCGAGAGACGTACTGA    100
                     |||.|||||||||||||||||||||||||||||.||||||||.|||||||
RBAM_001220__     51 GCTAAAGGATTTAAAAGCGAACAGTTTTGAAGAAGCGAGAGATGTACTGA    100

BSNT_00196___    101 TTCAGAAAATGGCGGAATATCAATCGTATACAGGAAACAGGGTTATTGTT    150
                     |.|||||.||||||||||||||.||.||.||.||||.|||.||.|||||.
RBAM_001220__    101 TCCAGAAGATGGCGGAATATCAGTCCTACACGGGAATCAGAGTCATTGTG    150

BSNT_00196___    151 GTTTTTGACGCGCATCTCGTAAAAGGGCTTGAGAAAAAACAGACCAACCA    200
                     ||.||||||||.||.||.||||||||..|.|||||||||||.||.||.||
RBAM_001220__    151 GTGTTTGACGCACACCTGGTAAAAGGTATAGAGAAAAAACAAACGAATCA    200

BSNT_00196___    201 TAGAGTTGAAGTAATTTTTACAAAAGAAAATGAGACGGCTGATGAGCGGA    250
                     .|||||.|||||.|||||.|||...||.|||||.|||||.||||||||||
RBAM_001220__    201 CAGAGTCGAAGTGATTTTCACACGGGAGAATGAAACGGCGGATGAGCGGA    250

BSNT_00196___    251 TAGAAAAGCTCGCTCAGGCTTTGAATAATATTGCGACTCAAATTCACGTT    300
                     |.||.|||||.||.|||||..||||||||||||||||.||.|||||.||.
RBAM_001220__    251 TCGAGAAGCTTGCCCAGGCACTGAATAATATTGCGACACAGATTCATGTC    300

BSNT_00196___    301 GCGACCTCTGACTATACTGAGCAGTGGGCGATTTTCGGACAGGGGGCATT    350
                     ||.|||||.||.|||||.|||||||||||||||||||||||.|||||..|
RBAM_001220__    301 GCAACCTCCGATTATACGGAGCAGTGGGCGATTTTCGGACAAGGGGCTCT    350

BSNT_00196___    351 GCGGAAATCGGCCCGGGAGCTTTTGAGAGAGGTAGAAACGATTGAAAGGC    400
                     .||.|||||.|||||||||||..||||.||.||.||.|||||.|||.|.|
RBAM_001220__    351 CCGTAAATCCGCCCGGGAGCTCCTGAGGGAAGTGGATACGATAGAACGCC    400

BSNT_00196___    401 GAATAGAGAGACGGGTAAGAAAAATCACTTCCGAAAAGCCGGCGGGTAAA    450
                     |.||..|.||.|||||...|||.||||||||.|||||.||..||||||||
RBAM_001220__    401 GGATTCAAAGGCGGGTTTCAAAGATCACTTCTGAAAAACCACCGGGTAAA    450

BSNT_00196___    451 ATTGCTTTATCGGAAGAGGTTTTGAAAACGTTTGAAAAGTG-----GAGG    495
                     ||.|...|.||.|||||||||||||||||||||||||||||     ||||
RBAM_001220__    451 ATCGAGCTGTCCGAAGAGGTTTTGAAAACGTTTGAAAAGTGGCGCCGAGG    500

BSNT_00196___    496 CGG---GGAGACTTAGATTAA    513
                     |||   |||   ||||     
RBAM_001220__    501 CGGTCTGGA---TTAG-----    513


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