Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00193 and RBAM_001190
See
Amino acid alignment /
Visit
BSNT_00193 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:58
# Commandline: needle
# -asequence dna-align/BSNT_00193___cysS.1.9828.seq
# -bsequence dna-align/RBAM_001190___cysS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00193___cysS-RBAM_001190___cysS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00193___cysS-RBAM_001190___cysS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00193___cysS
# 2: RBAM_001190___cysS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1406
# Identity: 1139/1406 (81.0%)
# Similarity: 1139/1406 (81.0%)
# Gaps: 10/1406 ( 0.7%)
# Score: 4624.0
#
#
#=======================================
BSNT_00193___ 1 ATGACAATCACACTTTATAATACATTGACTAGACAGAAGGAAACATTCGT 50
|||||.||.||||||||||||||||||||..|..|.||||||||||||||
RBAM_001190__ 1 ATGACCATTACACTTTATAATACATTGACACGGAAAAAGGAAACATTCGT 50
BSNT_00193___ 51 TCCTCTTGAAGAGGGAAAAGTGAAAATGTATGTATGCGGACCCACGGTTT 100
|||||||||.||.||.|||||.||||||||.||.||||||||.||.||.|
RBAM_001190__ 51 TCCTCTTGAGGAAGGCAAAGTAAAAATGTACGTGTGCGGACCGACTGTAT 100
BSNT_00193___ 101 ACAATTACATTCATATCGGGAACGCGCGTCCGGCAATCGTTTACGATACG 150
||||.||.|||||||||||.|||||.||||||||.||.||.||.|||||.
RBAM_001190__ 101 ACAACTATATTCATATCGGCAACGCCCGTCCGGCGATTGTGTATGATACC 150
BSNT_00193___ 151 GTTCGAAACTATTTAGAGTATAAAGGCTATGATGTGCAGTATGTCTCTAA 200
||.||.||||||||||||||||||||.||.|||||.||.||.||.||.||
RBAM_001190__ 151 GTACGCAACTATTTAGAGTATAAAGGATACGATGTTCAATACGTATCGAA 200
BSNT_00193___ 201 CTTCACAGACGTAGACGATAAATTAATTAAAGCGGCAAATGAACTCGGTG 250
.|||||.||.||.|||||.|||.|.|||||.|||||.||.||.|||||.|
RBAM_001190__ 201 TTTCACCGATGTTGACGACAAACTGATTAAGGCGGCCAACGAGCTCGGCG 250
BSNT_00193___ 251 AGGATGTACCCACCATTTCAGAGCGTTTTATTAAAGCATACTTTGAAGAC 300
||||.||.||.|||.||||.||.||.||.||||||||.||.|||||||||
RBAM_001190__ 251 AGGACGTCCCGACCGTTTCTGAACGGTTCATTAAAGCGTATTTTGAAGAC 300
BSNT_00193___ 301 GTAGGTGCGCTCGGCTGCCGAAAAGCCGACCTTCATCCGCGAGTAATGGA 350
||.||.||.|||||.|||||.|||||.||.|||||.||.||.||.|||||
RBAM_001190__ 301 GTGGGCGCCCTCGGATGCCGGAAAGCGGATCTTCACCCCCGGGTCATGGA 350
BSNT_00193___ 351 GAACATGGATGCCATTATCGAATTCGTAGATCAG----CTCGTGAAAAAG 396
.|||||||||||||||||.|||||.| |||| ||..|.|||||.
RBAM_001190__ 351 AAACATGGATGCCATTATTGAATTTG----TCAGCGAACTGATTAAAAAA 396
BSNT_00193___ 397 GGCTACGCATATGAATCAGAAGGTGACGTATATTTCAAAACCAGAGCGTT 446
||||||||.||||||||||||||.|||||.|||||||||||.||.||.||
RBAM_001190__ 397 GGCTACGCTTATGAATCAGAAGGCGACGTCTATTTCAAAACAAGGGCCTT 446
BSNT_00193___ 447 TGAAGGGTACGGAAAGCTTTCTCAGCAATCAATCGATGAACTAAGATCAG 496
.|||||.|||||.|||||.||||||||||||||.||||||||.|||||||
RBAM_001190__ 447 CGAAGGCTACGGCAAGCTATCTCAGCAATCAATTGATGAACTCAGATCAG 496
BSNT_00193___ 497 GTGCACGCATCCGGGTCGGCGAGAAAAAAGAAGATGCTCTTGATTTCGCA 546
|.||.||.|||||.|||||||||||.|||||.|||||.||.||.||.||.
RBAM_001190__ 497 GCGCGCGTATCCGTGTCGGCGAGAAGAAAGAGGATGCGCTGGACTTTGCT 546
BSNT_00193___ 547 CTGTGGAAAGCGGCAAAAGAAGGAGAAATCTCTTGGGATAGCCCTTGGGG 596
||.||||||||.||.||.||.||||||||.||.|||||||||||||||||
RBAM_001190__ 547 CTTTGGAAAGCTGCTAAGGACGGAGAAATTTCATGGGATAGCCCTTGGGG 596
BSNT_00193___ 597 GAAAGGACGTCCGGGCTGGCACATTGAATGCTCAGCAATGGTGAAAAAGT 646
.|||||.||.|||||||||||.|||||||||||.||||||||||||||||
RBAM_001190__ 597 AAAAGGCCGCCCGGGCTGGCATATTGAATGCTCCGCAATGGTGAAAAAGT 646
BSNT_00193___ 647 ATCTCGGTGACCAGATTGATATCCATGCGGGCGGACAGGATTTAACATTC 696
||.|.||||||.|.||.|||||.|||||.|||||.|||||..|.||||||
RBAM_001190__ 647 ATTTGGGTGACGAAATCGATATTCATGCCGGCGGTCAGGACCTGACATTC 696
BSNT_00193___ 697 CCTCACCATGAAAACGAAATTGCGCAATCTGAGGCGCTGACAGGCAAAAC 746
||.|||||||||||||||||.||.||||||||.||..|.||||||||.||
RBAM_001190__ 697 CCGCACCATGAAAACGAAATCGCCCAATCTGAAGCATTAACAGGCAAGAC 746
BSNT_00193___ 747 GTTTGCGAAGTACTGGCTTCATAATGGTTATATCAATATTGATAATGAAA 796
.||.||.||.|||||||||||.||.||.|||||||||||.||||||||.|
RBAM_001190__ 747 ATTCGCAAAATACTGGCTTCACAACGGATATATCAATATCGATAATGAGA 796
BSNT_00193___ 797 AAATGTCAAAATCACTAGGCAACTTTGTGCTTGTCCATGACATCATTAAA 846
|||||||||||||.||.|||||||||||..|.||.||.||.||||||||.
RBAM_001190__ 797 AAATGTCAAAATCGCTCGGCAACTTTGTTTTGGTGCACGATATCATTAAG 846
BSNT_00193___ 847 CAGCATGATCCGCAGCTTTTGAGATTCTTTATGCTATCTGTTCATTATCG 896
||..||||.|||||||||||||||||.||.|||||.||.||||||||.||
RBAM_001190__ 847 CAATATGACCCGCAGCTTTTGAGATTTTTCATGCTGTCCGTTCATTACCG 896
BSNT_00193___ 897 CCATCCGATTAACTATTCAGAAGAGCTTCTGGAGAATACGAAAAGCGCGT 946
|||.|||||.||||||||.||||||||.||.|||||.||.||||.|||||
RBAM_001190__ 897 CCACCCGATCAACTATTCGGAAGAGCTGCTTGAGAAAACAAAAAACGCGT 946
BSNT_00193___ 947 TCAACCGCTTAAAAACAGCGTACAGCAATCTTCAGCACCGTCTTAACAGC 996
|.||||||.|.||.||.||.|||||.|||.|..|.||.|||.|.|..|||
RBAM_001190__ 947 TTAACCGCCTGAAGACGGCCTACAGTAATTTAAACCATCGTTTGATTAGC 996
BSNT_00193___ 997 AGTACGAATTTAACCGAAGATGACGATCAATGGCTTGAAAAAGTTGAAGA 1046
||.||||||.|.||.||..||||.||..|||||||.|..|||.|.|||||
RBAM_001190__ 997 AGCACGAATCTGACTGACAATGATGAGGAATGGCTCGCTAAAATCGAAGA 1046
BSNT_00193___ 1047 ACACCGCAAAGCATTCGAAGAAGCGATGGACGATGATTTTAATACGGCGA 1096
.|||||||..||.||.||||||||.|||||.|||||||||||||||||||
RBAM_001190__ 1047 GCACCGCACTGCGTTTGAAGAAGCAATGGATGATGATTTTAATACGGCGA 1096
BSNT_00193___ 1097 ATGCCATTTCAGTCTTGTTTGACTTAGCGAAACACGCCAATTATTATCTT 1146
||||.|||||.||.|.||||||..|.|||||...|||||||||.||..|.
RBAM_001190__ 1097 ATGCAATTTCCGTTTGGTTTGATCTGGCGAAGGTCGCCAATTACTACATG 1146
BSNT_00193___ 1147 CAGAAAGATCATACGGCTGATCATGTGATTACGGCGTTTATTGAG-ATGT 1195
|||.||||..|||||||.|||||.||.||||..||.|||| |.|| ||||
RBAM_001190__ 1147 CAGGAAGACAATACGGCGGATCACGTCATTAAAGCCTTTA-TCAGCATGT 1195
BSNT_00193___ 1196 TTGACCGCATTGTTTCTGTCCTCGGTTTTTCGTTGGGTGAGCAGGAACTT 1245
|||||.|.||.|..|||||.|||||..||.||.|.||.||..|.||.|||
RBAM_001190__ 1196 TTGACAGAATCGGATCTGTTCTCGGACTTACGCTCGGCGAAGAAGAGCTT 1245
BSNT_00193___ 1246 CTCGATCAAGAGATTGAAGACTTAATCGAAAAGCGAAATGAAGCGCGCCG 1295
.||||..|||||||||||||.||.||.||.|||.||||||||||.|||||
RBAM_001190__ 1246 GTCGACGAAGAGATTGAAGAGTTGATTGAGAAGAGAAATGAAGCCCGCCG 1295
BSNT_00193___ 1296 GAATCGCGATTTTGCATTGTCAGACCAGATCCGCGACCAGCTGAAAAGCA 1345
.||||||||||||||.||||||||||||||.|||||.|||||||||||||
RBAM_001190__ 1296 CAATCGCGATTTTGCTTTGTCAGACCAGATTCGCGATCAGCTGAAAAGCA 1345
BSNT_00193___ 1346 TGAATATCATTCTTGAAGATACGGCTCAAGGCACTCGCTGGAAACGGGGA 1395
|||||||||||||||||||||||||.||.||.|||||||||||.||||||
RBAM_001190__ 1346 TGAATATCATTCTTGAAGATACGGCCCAGGGAACTCGCTGGAAGCGGGGA 1395
BSNT_00193___ 1396 GAATAA 1401
||.|||
RBAM_001190__ 1396 GAGTAA 1401
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.