Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00180 and RBAM_001120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:57
# Commandline: needle
# -asequence dna-align/BSNT_00180___radA.1.9828.seq
# -bsequence dna-align/RBAM_001120___radA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00180___radA-RBAM_001120___radA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00180___radA-RBAM_001120___radA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00180___radA
# 2: RBAM_001120___radA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1392
# Identity: 1118/1392 (80.3%)
# Similarity: 1118/1392 (80.3%)
# Gaps: 27/1392 ( 1.9%)
# Score: 4523.5
#
#
#=======================================
BSNT_00180___ 1 ATGGCTAAAACAAAATCGAAATTCATCTGCCAATCCTGCGGCTACGAGTC 50
|||||||||.|||||.|.||||||||||||||.||.|||||.||.||.||
RBAM_001120__ 1 ATGGCTAAATCAAAAACAAAATTCATCTGCCACTCATGCGGTTATGAATC 50
BSNT_00180___ 51 TCCAAAATGGATGGGGAAATGTCCGGGCTGCGGTGCTTGGAATACAATGG 100
..|||||||||||||.||.||.|||||||||||.||||||||||||||||
RBAM_001120__ 51 CGCAAAATGGATGGGAAAGTGCCCGGGCTGCGGGGCTTGGAATACAATGG 100
BSNT_00180___ 101 TGGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCGGCTTTTTCT 150
|||||||||..||.||||||||.|||||.||||||.|.||||||||.||.
RBAM_001120__ 101 TGGAAGAAACCATAAAAAAAGCGCCGGCGAATCGGCGGGCGGCTTTCTCC 150
BSNT_00180___ 151 CATTCTGTTCAAACTGTACAGAAACCTTCACCTATTACATCAATCGAAAC 200
||.||.||||||||.||.||||||||.|||||.|||||||||||.|||||
RBAM_001120__ 151 CACTCCGTTCAAACCGTCCAGAAACCATCACCCATTACATCAATTGAAAC 200
BSNT_00180___ 201 ATCAGAAGAACCCCGCGTCAAAACCCAGCTTGGCGAGTTTAACAGAGTAC 250
|||.||||||||||||||..|.||..||||||..||.||.||||||||.|
RBAM_001120__ 201 ATCGGAAGAACCCCGCGTTCACACAAAGCTTGAAGAATTCAACAGAGTGC 250
BSNT_00180___ 251 TCGGCGGAGGTGTCGTTAAAGGCTCCCTCGTTTTAATTGGCGGTGATCCT 300
|.|||||.||.||.||.||.|||||..|.||.|||||.|||||.|||||.
RBAM_001120__ 251 TTGGCGGCGGCGTTGTGAAGGGCTCGTTAGTATTAATCGGCGGCGATCCC 300
BSNT_00180___ 301 GGTATCGGAAAGTCAACGCTATTACTGCAGGTTTCCGCTCAATTATCAGG 350
||.||||||||.||||||||..|.||.||.||.|||||.||||||.|||
RBAM_001120__ 301 GGCATCGGAAAATCAACGCTCCTTCTCCAAGTATCCGCACAATTAGCAG- 349
BSNT_00180___ 351 CTCAT----CAAACAGTGTCCTGTATATTTCGGGAGAAGAATCTGTAAAG 396
|| |...|||.||.||.||.|||||.||.||||||||.||.|||
RBAM_001120__ 350 ---ATACGGCCGGCAGCGTGCTTTACATTTCAGGGGAAGAATCCGTGAAG 396
BSNT_00180___ 397 CAAACGAAGCTGCGAGCAGACCGTCTGGGCATTAA-----TAATCCGTCA 441
||||||||||||||.||.|||.|.||.||.||.|| .||| ||
RBAM_001120__ 397 CAAACGAAGCTGCGCGCCGACAGACTTGGAATCAACAGCCAAAT--GT-- 442
BSNT_00180___ 442 CTGCATGTTTTATCTGAAACCGATATGGAGTATATTTCGTCTGCTATACA 491
|.|||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001120__ 443 -TACATGTTTTATCTGAAACCGATATGGAGTATATTTCGTCTGCTATACA 491
BSNT_00180___ 492 AGAGATGAATCCAGCGTTTGTCGTTGTTGACTCTATTCAAACGGTTTACC 541
|||||||||.||.||.|||||.||.||.|||||.|||||.||.|||||||
RBAM_001120__ 492 AGAGATGAAACCCGCATTTGTTGTCGTAGACTCCATTCAGACCGTTTACC 541
BSNT_00180___ 542 AAAGCGATATTACATCGGCTCCAGGCAGTGTGTCACAGGTCAGAGAATGT 591
||||.|||||.||.||.|||||.||||||||.|||||.||.|||||.|||
RBAM_001120__ 542 AAAGTGATATCACCTCAGCTCCCGGCAGTGTATCACAAGTAAGAGAGTGT 591
BSNT_00180___ 592 ACTGCTGAGCTGATGAAAATCGCAAAAACAAAAGGTATTCCGATTTTTAT 641
||.||.||..|||||||||||||.||||||||.||.||.||.||||||||
RBAM_001120__ 592 ACGGCCGAATTGATGAAAATCGCGAAAACAAACGGCATACCTATTTTTAT 641
BSNT_00180___ 642 CGTAGGGCACGTGACGAAAGAAGGGTCTATTGCAGGTCCGAGACTGTTGG 691
|||.||||||||.||.||||||||.||.||.|||||.||||||.||.|.|
RBAM_001120__ 642 CGTCGGGCACGTCACAAAAGAAGGATCGATCGCAGGGCCGAGATTGCTTG 691
BSNT_00180___ 692 AGCATATGGTTGACACTGTTTTATATTTTGAAGGAGAACGCCACCATACT 741
||||.|||||.||.||.|||.||||.|||||||||||.||.||||||||.
RBAM_001120__ 692 AGCACATGGTCGATACCGTTCTATACTTTGAAGGAGAGCGGCACCATACA 741
BSNT_00180___ 742 TTCCGTATTTTGCGGGCTGTAAAAAACCGTTTCGGATCTACAAACGAAAT 791
|||||||||||||||||.|||||||||||||||||.||.|||||.|||||
RBAM_001120__ 742 TTCCGTATTTTGCGGGCCGTAAAAAACCGTTTCGGCTCAACAAATGAAAT 791
BSNT_00180___ 792 GGGCATTTTCGAAATGCGGGAAGAGGGGCTCACTGAGGTTTTGAATCCTT 841
||||||.||.||||||||||||||||||||.||.||.||..||||.||||
RBAM_001120__ 792 GGGCATCTTTGAAATGCGGGAAGAGGGGCTTACGGAAGTGCTGAACCCTT 841
BSNT_00180___ 842 CGGAAATTTTCTTAGAAGAACGCTCTGCTGGTTCCGCAGGCTCGAGTATC 891
|.|||||||||||.|||||.||.|||||.||..|..|.||.|||||||||
RBAM_001120__ 842 CTGAAATTTTCTTGGAAGAGCGTTCTGCCGGGGCATCGGGTTCGAGTATC 891
BSNT_00180___ 892 ACTGCCTCTATGGAGGGCACTAGACCGATTCTCGTTGAAATTCAGGCGCT 941
..|||.||.|||||.||.||.||||||||.||.||||||||.||||||||
RBAM_001120__ 892 GTTGCGTCAATGGAAGGAACGAGACCGATCCTGGTTGAAATCCAGGCGCT 941
BSNT_00180___ 942 CATCTCGCCAACAAGCTTTGGCAACCCAAGGCGTATGGCAACGGGAATAG 991
|||.||.||.||.||.|||||.|||||..|.||.|||||.||.||.||.|
RBAM_001120__ 942 CATATCACCGACCAGTTTTGGAAACCCGCGCCGCATGGCTACAGGCATTG 991
BSNT_00180___ 992 ACCATAACAGGGTTTCTCTGTTA---ATGGCTGTGTTAGAAAAAAGAGTT 1038
||||.||||||||.|| |||| |||||||||.|.||.||..|.||.
RBAM_001120__ 992 ACCACAACAGGGTGTC---GTTAATTATGGCTGTGCTTGAGAAGCGGGTG 1038
BSNT_00180___ 1039 GGACTGCTGCTGCAAAATCAGGATGCTTATTTGAAAGTGGCTGGCGGCGT 1088
||.||..||||.||||||||.|||||.|||||.||.||.||.|||||.||
RBAM_001120__ 1039 GGTCTTTTGCTTCAAAATCAAGATGCCTATTTAAAGGTCGCCGGCGGGGT 1088
BSNT_00180___ 1089 TAAGCTTGATGAACCGGCAATTGATCTTGCGATTGTGATTAGTATCGCAT 1138
.||.||.|||||||||||.||||||.|.||..|.|...|.||.||.||.|
RBAM_001120__ 1089 CAAACTGGATGAACCGGCGATTGATTTGGCAGTAGCCGTCAGCATTGCCT 1138
BSNT_00180___ 1139 CAAGCTTTAGAGACACACCTCCAAATCCTGCAGATTGTTTTATTGGAGAA 1188
|||||||.|||||.|||||.||.|||||.||||||||.|||||.||.|||
RBAM_001120__ 1139 CAAGCTTCAGAGATACACCGCCGAATCCCGCAGATTGCTTTATCGGTGAA 1188
BSNT_00180___ 1189 GTGGGATTAACCGGAGAAGTCCGGCGGGTTTCAAGAATTGAACAGCGTGT 1238
|||||..|.||.|||||||||||..||||.||||||||.||||||||.||
RBAM_001120__ 1189 GTGGGTCTGACAGGAGAAGTCCGCAGGGTGTCAAGAATCGAACAGCGCGT 1238
BSNT_00180___ 1239 GAAAGAAGCGGCAAAGCTTGGCTTTAAACGCATGATCATACCCGCGGCAA 1288
.||||||||||||||.||.|||||.||.||||||.|||||||.|.|||.|
RBAM_001120__ 1239 AAAAGAAGCGGCAAAACTCGGCTTCAAGCGCATGGTCATACCTGAGGCGA 1288
BSNT_00180___ 1289 ATCTGGACGGATGGACAAAACCAAAAGGGATTGAGGTTATCGGAGTAGCA 1338
||...||.||.|||||||.|||||||||||||||||||.|||||||||||
RBAM_001120__ 1289 ATGCAGATGGGTGGACAATACCAAAAGGGATTGAGGTTGTCGGAGTAGCA 1338
BSNT_00180___ 1339 AATGTTGCAGAAGCGCTTCGTACTTCATTAGGAGGATAA--- 1377
|||||||||||||||||||||||||||||||||||||.|
RBAM_001120__ 1339 AATGTTGCAGAAGCGCTTCGTACTTCATTAGGAGGATCATAA 1380
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