Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00175 and RBAM_001090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:56
# Commandline: needle
# -asequence dna-align/BSNT_00175.1.9828.seq
# -bsequence dna-align/RBAM_001090___mcsA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00175-RBAM_001090___mcsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00175-RBAM_001090___mcsA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00175
# 2: RBAM_001090___mcsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 558
# Identity: 293/558 (52.5%)
# Similarity: 293/558 (52.5%)
# Gaps: 177/558 (31.7%)
# Score: 1113.0
#
#
#=======================================
BSNT_00175 0 -------------------------------------------------- 0
RBAM_001090__ 1 TTGATTTGTCAAGAATGCAATGAGAGACCGGCCACTTTTCACTTTACGAA 50
BSNT_00175 0 -------------------------------------------------- 0
RBAM_001090__ 51 AGTTGTTAATGGAGAAAAACAAGAAGTTCATATTTGTGAACAATGTGCAA 100
BSNT_00175 0 -------------------------------------------------- 0
RBAM_001090__ 101 AAGAAAATAGCGATTCATACAGTATAAGTGGAAACCAAGGGTTCTCGATC 150
BSNT_00175 1 ---------------------------ATGGATTCTTCATTTCAAAATGC 23
|||||.||||||||||||||..|
RBAM_001090__ 151 CATAATTTATTATCAGGGCTGCTGAATATGGAGTCTTCATTTCAAAACAC 200
BSNT_00175 24 AGGAACTCAAATGTTCAGTCACTCGGAGCAAATATCTGCTTGTCCGAAAT 73
.||..|||||||||||.|..||||.||||||....|.||||||..|||||
RBAM_001090__ 201 CGGTTCTCAAATGTTCGGCTACTCAGAGCAAGGCACAGCTTGTAAGAAAT 250
BSNT_00175 74 GCGGAATGACTTTTCAGCAATTCAGAAAAATTGGCCGTTTTGGATGTTCG 123
||||.|||||.||||||||..|.|||||||..||.|||||.||.|||.||
RBAM_001090__ 251 GCGGTATGACGTTTCAGCAGCTGAGAAAAACAGGGCGTTTCGGCTGTGCG 300
BSNT_00175 124 GAATGTTACAAAACATTTCATAGCAACATTACACCAATCCTACGTAAAGT 173
|||||||||.|.||.||..|.|||.|.|||||.||.|||.|.||.|||||
RBAM_001090__ 301 GAATGTTACGATACGTTCTACAGCCAAATTACGCCGATCTTGCGAAAAGT 350
BSNT_00175 174 GCACAGCGGAAACACTGTGCATGCAGGTAAGATACCGAAACGAATAGGCG 223
.||||||||.||.||.||||||||.||.||.||.||.|||||||||||||
RBAM_001090__ 351 TCACAGCGGGAATACGGTGCATGCCGGGAAAATTCCAAAACGAATAGGCG 400
BSNT_00175 224 GCAATCTTCATGTCAGACGGCAGATTGATATGCTAAAAAAGGAATTAGAA 273
|.||.||.|||||.||||||||.||.||.|||.|||||||.|||.|.|||
RBAM_001090__ 401 GAAACCTGCATGTAAGACGGCAAATGGAAATGTTAAAAAAAGAACTTGAA 450
BSNT_00175 274 TCCTTAATCCATCAAGAAGAATTTGAAAATGCAGCTCATGTAAGAGATCA 323
||.|||||.||.||.|||||.|||||||..|||||..|.||.||||||||
RBAM_001090__ 451 TCTTTAATACACCACGAAGAGTTTGAAAGAGCAGCGGAGGTCAGAGATCA 500
BSNT_00175 324 AATTCGTTCATTAGAACAATCACTCAAAAGTACAGATAGTGAGGAGGAAC 373
.||.||.||.|||||.||.....|.|||||||.|||.|||||||.|||||
RBAM_001090__ 501 GATCCGATCGTTAGAGCAGAAGTTAAAAAGTAAAGACAGTGAGGGGGAAC 550
BSNT_00175 374 AGGAGTAA 381
|.|.||||
RBAM_001090__ 551 AAGGGTAA 558
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