Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00134 and RBAM_000880

See Amino acid alignment / Visit BSNT_00134 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:56
# Commandline: needle
#    -asequence dna-align/BSNT_00134___sul.1.9828.seq
#    -bsequence dna-align/RBAM_000880___sul.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00134___sul-RBAM_000880___sul.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00134___sul-RBAM_000880___sul.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00134___sul
# 2: RBAM_000880___sul
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 869
# Identity:     654/869 (75.3%)
# Similarity:   654/869 (75.3%)
# Gaps:          22/869 ( 2.5%)
# Score: 2382.5
# 
#
#=======================================

BSNT_00134___      1 ATGGCGCAGCACACAATAGATC-----AAACACAAGTCATCCACACTAAG     45
                     |||||||||||.|||||.||.|     |||| ..|.||||.||.|..|||
RBAM_000880__      1 ATGGCGCAGCAAACAATTGAACAGCCTAAAC-TGATTCATACAAAAAAAG     49

BSNT_00134___     46 CCCAGCGCTTTATCATATAAAGAGAAGACGCTGGTGATGGGAATTTTAAA     95
                         |||||.|.||.|||||||||||||||||.||.|||||.||.|||||
RBAM_000880__     50 ----GCGCTCTTTCCTATAAAGAGAAGACGCTCGTTATGGGGATATTAAA     95

BSNT_00134___     96 CGTAACGCCTGACTCTTTCTCGGACGGCGGAAAATATGACAGCTTGGACA    145
                     .||||||||.|||||.|||||.||||||||.|||||.|||||...|||.|
RBAM_000880__     96 TGTAACGCCAGACTCCTTCTCTGACGGCGGCAAATACGACAGTACGGAAA    145

BSNT_00134___    146 AGGCGCTGCTGCACGCGAAAGAGATGATCGATGATGGTGCCCATATCATT    195
                     .||||||.|||||.|||....|||||...||.||.||.||.||||||||.
RBAM_000880__    146 GGGCGCTTCTGCATGCGGCGAAGATGGCTGAAGAAGGGGCGCATATCATA    195

BSNT_00134___    196 GATATCGGAGGGGAATCGACAAGGCCTGGCGC-TGAGTGGGTATCTGAGG    244
                     ||||||||.||.|||||||||||.||.||||| |.|.| .||.||.|..|
RBAM_000880__    196 GATATCGGCGGTGAATCGACAAGACCCGGCGCATCACT-CGTGTCGGCTG    244

BSNT_00134___    245 ATGAGGAGATGTCCAGAGTCATTCCGGTGATTGAGCGGATTACGAAAGAG    294
                     |||||||.||||||.|||||||.||.||.||.||.||||||||.|..|||
RBAM_000880__    245 ATGAGGAAATGTCCCGAGTCATCCCCGTCATAGAACGGATTACAAGCGAG    294

BSNT_00134___    295 CTTGGTGTTCCTATTTCTGTAGATACGTACAAGGCTTCTGTCGCAGATGA    344
                     ||.|...||||..||||..|.|||||||||||.||.||.||.|||||.||
RBAM_000880__    295 CTGGACATTCCGCTTTCAATCGATACGTACAAAGCGTCCGTGGCAGACGA    344

BSNT_00134___    345 AGCAGTGAAAGCCGGCGCATCCATTATCAATGATATTTGGGGTGCCAAAC    394
                     |||.||.|||||.||.||.||.||..|.|||||.||.|||||.||.|||.
RBAM_000880__    345 AGCGGTCAAAGCGGGAGCCTCTATCCTTAATGACATCTGGGGGGCGAAAG    394

BSNT_00134___    395 ATGATCCGAAGATGGCTTCCGTTGCAGCTGAACATAATGTTCCAATTGTT    444
                     .||||||..|.|||||.||.||.||.||.|.|||....|||||.|||.|.
RBAM_000880__    395 GTGATCCTGACATGGCGTCAGTAGCCGCCGCACACGGGGTTCCGATTATC    444

BSNT_00134___    445 CTCATGCATAACCGCCCTGAAAGAAACTACAATGA-CTTATTGCCGGATA    493
                     .|.||||||||.|||...||||||||||||||.|| |||||| ||.||||
RBAM_000880__    445 TTAATGCATAATCGCATGGAAAGAAACTACAACGATCTTATT-CCTGATA    493

BSNT_00134___    494 TGCTGTCGGACTTAATGGAGAGTGTAAAAATTGCTGTTGAGGCCGGAGT-    542
                     ||||..|.|||||.|||||.||.|||||||||||.|..||.|||||.|| 
RBAM_000880__    494 TGCTTGCAGACTTGATGGAAAGCGTAAAAATTGCCGCAGAAGCCGGCGTC    543

BSNT_00134___    543 --AGACGAGAAGAACATTATTCTTGATCCCGGTATCGGTTTCGCGAAAAC    590
                       |||.|   |.||.||.|||||.|||||.||.|||||.||.|||||||.
RBAM_000880__    544 ACAGATG---AAAATATGATTCTGGATCCGGGGATCGGCTTTGCGAAAAA    590

BSNT_00134___    591 CTATCACGATAACTTGGCAGTGATGAACAAACTAGAGATTTTCAGCGGAG    640
                     ||||.|.||.||..||||.||.||||||||.||.|||.|.||||||||..
RBAM_000880__    591 CTATGAGGACAATCTGGCTGTCATGAACAAGCTGGAGGTGTTCAGCGGGT    640

BSNT_00134___    641 TGGGATATCCGGTTCTTCTGGCAACCTCCCGAAAAAGATTCATCGGGCGT    690
                     |.||.||||||.|.||||||||.||.||..|||||||.||||||||.|||
RBAM_000880__    641 TAGGTTATCCGCTGCTTCTGGCGACATCGAGAAAAAGGTTCATCGGCCGT    690

BSNT_00134___    691 GTTCTGGATCTTCCGCCTGAGGAGCGGGCTGAGGGCACAGGCGCGACTGT    740
                     ||.||.||.|||||.|||||.||.||.||.|||||.||.||.|||||.||
RBAM_000880__    691 GTGCTTGACCTTCCCCCTGAAGAACGTGCCGAGGGAACGGGAGCGACAGT    740

BSNT_00134___    741 GTGTCTCGGCATTCAAAAAGGCTGTGACATTGTCAGGGTCCATGATGT-A    789
                     |||.||.|||.|.|||||||||||.||||||||.||||||||.||||| |
RBAM_000880__    741 GTGCCTTGGCGTCCAAAAAGGCTGCGACATTGTGAGGGTCCACGATGTCA    790

BSNT_00134___    790 AAGCAAATTGCCAGAATGGCGAAAATGATGGACGCGATGCTGAATAAGGG    839
                     ||| |.||.||.||||||.||||.||||||||.||.|||.||||.||.||
RBAM_000880__    791 AAG-AGATCGCAAGAATGACGAAGATGATGGATGCTATGTTGAACAAAGG    839

BSNT_00134___    840 AGGGGTGCACCATGGATAA    858
                     |||.||.||..||||||||
RBAM_000880__    840 AGGCGTACATTATGGATAA    858


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00134 and RBAM_000880

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
