Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00101 and RBAM_000700

See Amino acid alignment / Visit BSNT_00101 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:53
# Commandline: needle
#    -asequence dna-align/BSNT_00101___yabQ.1.9828.seq
#    -bsequence dna-align/RBAM_000700___yabQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00101___yabQ-RBAM_000700___yabQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00101___yabQ-RBAM_000700___yabQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00101___yabQ
# 2: RBAM_000700___yabQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 668
# Identity:     488/668 (73.1%)
# Similarity:   488/668 (73.1%)
# Gaps:          64/668 ( 9.6%)
# Score: 1763.5
# 
#
#=======================================

BSNT_00101___      1 ATGACGCTGACCACACAATTCTATACAATGCTGGCGATGTCCGGTATGGG     50
                     ||||||||||||||.|||||.|||||.||||||||.|||.||||||||||
RBAM_000700__      1 ATGACGCTGACCACCCAATTTTATACGATGCTGGCAATGACCGGTATGGG     50

BSNT_00101___     51 TCTCTGGCTTGGTGCTTCGCTTGATACATACCGGCTCTTTGTCATTCGTG    100
                     ...||||||.||.||.|||||||||||||||.||||.|||||||..||||
RBAM_000700__     51 CGCCTGGCTCGGAGCGTCGCTTGATACATACAGGCTGTTTGTCAGCCGTG    100

BSNT_00101___    101 CCAAAACAGCCAGATGGCTATTATTTATTCATGATATTCTTTTCTGGATT    150
                     |||||||.|||||||||||.|||||.||||||||.|||||.||.||||||
RBAM_000700__    101 CCAAAACGGCCAGATGGCTGTTATTCATTCATGACATTCTCTTTTGGATT    150

BSNT_00101___    151 GTGCAAGGGCTGCTTTTCTTTTATGTCTTGCTTCATGTAAATGAGGGAGA    200
                     ||.|||||.|||||.||.||.|||||..||||..|.||.|||||.|||||
RBAM_000700__    151 GTACAAGGTCTGCTGTTTTTCTATGTGCTGCTCAACGTGAATGAAGGAGA    200

BSNT_00101___    201 ATTCAGGATTTACATCTTTTTAGCGGTTCTGCTGGGCGTTGCGACGTATC    250
                     |.|||||.|.|||||.||.||.||.||..|.|||||..||||||||||.|
RBAM_000700__    201 ACTCAGGGTATACATTTTCTTGGCTGTCTTACTGGGGATTGCGACGTACC    250

BSNT_00101___    251 AGAGCCTTTGCAAACGAATCTATATAAAAATACTGAAATTCGTCATTTAC    300
                     |.|||||.|..||||||||.||||||||||||||||||||.|.||||.|.
RBAM_000700__    251 AAAGCCTGTTTAAACGAATGTATATAAAAATACTGAAATTTGCCATTCAT    300

BSNT_00101___    301 CTTGTTGTTTCTGTTTATCAATTCTTCAAAAAA-CTCATTCAGCACGTGT    349
                     ||||..||.|||.||||.|||||| .||||||| |||||||||||||||.
RBAM_000700__    301 CTTGCGGTGTCTCTTTACCAATTC-GCAAAAAAGCTCATTCAGCACGTGC    349

BSNT_00101___    350 TATTTCGTCCTATTGTGTGGACATGC----GGAGC-GATCATCTGGCTG-    393
                     |.||.|||||     .|||....|||    ..||| |.|||||.||||| 
RBAM_000700__    350 TGTTCCGTCC-----GGTGCTTCTGCTCTTTAAGCTGCTCATCGGGCTGA    394

BSNT_00101___    394 --GCGGCATT-TTTATTCAAGAAAACATACAGCCTGATAGG---------    431
                       .|||  || |||.||        .|||| .||| ||.||         
RBAM_000700__    395 TCACGG--TTGTTTCTT--------TATAC-TCCT-ATCGGGTGAGTGCC    432

BSNT_00101___    432 TTTTCTCCTGCTGTGTCTATATAAAATAGTCATGGTTCTG----------    471
                     ||||.|.| |..||||||.|.|||.||.||.|.|.||.||          
RBAM_000700__    433 TTTTTTGC-GAAGTGTCTTTTTAAGATCGTAACGTTTTTGCTGTATCCGC    481

BSNT_00101___    472 TGTTTTCCGATCC-GTTTTATCGCGAAACAATGTTTGAAACTTCTTCCTG    520
                     ||||||    ||| |||       ||||||||..||||||||||||||  
RBAM_000700__    482 TGTTTT----TCCTGTT-------GAAACAATTATTGAAACTTCTTCC--    518

BSNT_00101___    521 TGAAAA--TGCGTCTAACTTTTAGACGTTATTTTGAAAAAGGTGCAGGAT    568
                     ||||||  .||||||.|||||.|.|||.||||||.|||||.|||||||||
RBAM_000700__    519 TGAAAAGTGGCGTCTTACTTTCAAACGATATTTTCAAAAAAGTGCAGGAT    568

BSNT_00101___    569 TTCTCAAAAAGAAGAAGAAACTATTGATAACCATAAGAACGACCATTACA    618
                     ||.|..||||||..|||||||||.|.|||||.||.|||.|||||||.|.|
RBAM_000700__    569 TTTTACAAAAGAGCAAGAAACTAATCATAACAATCAGATCGACCATGATA    618

BSNT_00101___    619 CGGTTTTTGAAGAAATGA    636
                     ||..|||||||.|..|||
RBAM_000700__    619 CGTATTTTGAAAAGGTGA    636


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