Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00088 and RBAM_000600

See Amino acid alignment / Visit BSNT_00088 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:52
# Commandline: needle
#    -asequence dna-align/BSNT_00088___prs.1.9828.seq
#    -bsequence dna-align/RBAM_000600___prs.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00088___prs-RBAM_000600___prs.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00088___prs-RBAM_000600___prs.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00088___prs
# 2: RBAM_000600___prs
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 955
# Identity:     806/955 (84.4%)
# Similarity:   806/955 (84.4%)
# Gaps:           2/955 ( 0.2%)
# Score: 3422.0
# 
#
#=======================================

BSNT_00088___      1 ATGTCTAATCAATACGGAGATAAGAATTTAAAGATTTTTTCTTTGAATTC     50
                     ||||||||..||||||||||||||||||||||||||||||||||||||||
RBAM_000600__      1 ATGTCTAACGAATACGGAGATAAGAATTTAAAGATTTTTTCTTTGAATTC     50

BSNT_00088___     51 GAATCCAGAGCTTGCAAAAGAAATCGCAGATATAGTTGGAGTTCAATTAG    100
                     .||||||||.|||||||||||||||||.||||..||.||.||||||||||
RBAM_000600__     51 AAATCCAGAACTTGCAAAAGAAATCGCGGATAATGTAGGGGTTCAATTAG    100

BSNT_00088___    101 GGAAATGTTCTGTCACAAGATTTAGTGACGGGGAAGTCCAAATTAATATC    150
                     |.||.||.|||||.||||||||.||||||||.||.|||||.||.||.||.
RBAM_000600__    101 GAAAGTGCTCTGTTACAAGATTCAGTGACGGAGAGGTCCAGATCAACATA    150

BSNT_00088___    151 GAAGAAAGTATTCGCGGATGTGATTGTTACATCATCCAGTCTACAAGTGA    200
                     |||||||||||||||||.||||||||.||.|||||.|||||||||||||.
RBAM_000600__    151 GAAGAAAGTATTCGCGGCTGTGATTGCTATATCATTCAGTCTACAAGTGC    200

BSNT_00088___    201 CCCCGTTAACGAGCATATTATGGAACTGCTGATTATGGTAGATGCGTTAA    250
                     .||.||.||||||||.||.||||||.|||||||||||||.||.||.||||
RBAM_000600__    201 GCCGGTCAACGAGCACATCATGGAATTGCTGATTATGGTTGACGCTTTAA    250

BSNT_00088___    251 AACGCGCTTCTGCAAAAACGATTAACATTGTTATTCCTTATTACGGTTAT    300
                     |.||||||||.||.|||||.||.||||||||.|||||.||.|||||||||
RBAM_000600__    251 AGCGCGCTTCCGCGAAAACAATCAACATTGTCATTCCGTACTACGGTTAT    300

BSNT_00088___    301 GCGCGTCAAGACAGAAAAGCAAGATCCCGTGAGCCAATCACAGCTAAACT    350
                     |||||.||.|||||||||||||||||.|||||.||.||.||.||.|||||
RBAM_000600__    301 GCGCGCCAGGACAGAAAAGCAAGATCACGTGAACCGATTACGGCAAAACT    350

BSNT_00088___    351 TTTCGCTAACCTGCTTGAAACAGCCGGTGCGACTCGTGTGATTGCACTTG    400
                     |||.||.|||||||||||||||||.||||||||.||.|||||.||.||||
RBAM_000600__    351 TTTTGCAAACCTGCTTGAAACAGCGGGTGCGACACGCGTGATCGCGCTTG    400

BSNT_00088___    401 ACCTGCATGCGCCGCAAATTCAAGGATTCTTTGATATACCGATTGACCAC    450
                     |..|.||.|||||||||||||||||.|||||||||||.||||||||||||
RBAM_000600__    401 ATTTACACGCGCCGCAAATTCAAGGTTTCTTTGATATTCCGATTGACCAC    450

BSNT_00088___    451 TTAATGGGTGTTCCGATTTTAGGAGAATATTTTGAAGGCAAAAATCTTG-    499
                     |||||||||||||||||||||||..|.||.||||||||.|||.| |||| 
RBAM_000600__    451 TTAATGGGTGTTCCGATTTTAGGCCATTACTTTGAAGGTAAAGA-CTTGA    499

BSNT_00088___    500 AAGATATCGTCATTGTTTCACCAGACCATGGCGGTGTGACACGTGCCCGC    549
                     ||||||||||.||||||||.||.|||||.|||||||||||.||.||||||
RBAM_000600__    500 AAGATATCGTTATTGTTTCTCCTGACCACGGCGGTGTGACGCGCGCCCGC    549

BSNT_00088___    550 AAACTGGCTGACCGACTAAAAGCGCCAATTGCGATTATCGATAAACGCCG    599
                     |||||.||.|||||.||.||||||||.||.|||||||||||.||||||||
RBAM_000600__    550 AAACTTGCGGACCGTCTGAAAGCGCCGATCGCGATTATCGACAAACGCCG    599

BSNT_00088___    600 TCCGCGTCCAAACGTGGCGGAAGTCATGAATATTGTAGGTAACATCGAAG    649
                     |||..|.||.||.|.||..|||||.|||||.||.||.||||||.|.||||
RBAM_000600__    600 TCCTAGACCGAATGAGGTAGAAGTGATGAACATCGTCGGTAACGTGGAAG    649

BSNT_00088___    650 GGAAGACTGCTATCCTCATCGATGACATTATTGATACTGCAGGTACGATT    699
                     |.||.||.||.||.||.||||||||.|||||||||||.||.||.||.||.
RBAM_000600__    650 GTAAAACAGCGATTCTGATCGATGATATTATTGATACGGCCGGCACAATC    699

BSNT_00088___    700 ACACTTGCTGCTAATGCGCTCGTTGAAAACGGAGCGAAAGAAGTATATGC    749
                     ||||||||.|||||.|||||.||||||||||||||...||||||.|||||
RBAM_000600__    700 ACACTTGCCGCTAACGCGCTGGTTGAAAACGGAGCTGCAGAAGTGTATGC    749

BSNT_00088___    750 ATGCTGTACACACCCTGTACTATCAGGCCCTGCGGTAGAACGGATTAATA    799
                     |||||||||.|||||||||||.|||||||||||.||.||.|||||.||||
RBAM_000600__    750 ATGCTGTACGCACCCTGTACTGTCAGGCCCTGCCGTTGAGCGGATCAATA    799

BSNT_00088___    800 ATTCAACAATTAAAGAGCTTGTTGTGACAAACAGCATCAAGCTTCCCGAA    849
                     |.||.|.|||.||.||||||||.||.||.||||||||.||.|||||.||.
RBAM_000600__    800 ACTCTAAAATCAAGGAGCTTGTCGTAACGAACAGCATTAAACTTCCTGAT    849

BSNT_00088___    850 GAAAAGAAAATTGAACGCTTTAGGCAGCTTTCAGTCGGACCGCTTCTGGC    899
                     ||.||.|||||.||||||||||.|||||||||.|||||||||||||||||
RBAM_000600__    850 GAGAAAAAAATCGAACGCTTTAAGCAGCTTTCTGTCGGACCGCTTCTGGC    899

BSNT_00088___    900 AGAAGCAATTATTCGCGTTCATGAGCAGCAATCAGTCAGCTATCTGTTCA    949
                     .|||||.|||||.||||||||.|||.|.|||||.|||||||||.|.||||
RBAM_000600__    900 TGAAGCGATTATCCGCGTTCACGAGAAACAATCTGTCAGCTATTTATTCA    949

BSNT_00088___    950 GCTAA    954
                     |||||
RBAM_000600__    950 GCTAA    954


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