Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00078 and RBAM_000510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:51
# Commandline: needle
# -asequence dna-align/BSNT_00078___ksgA.1.9828.seq
# -bsequence dna-align/RBAM_000510___ksgA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00078___ksgA-RBAM_000510___ksgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00078___ksgA-RBAM_000510___ksgA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00078___ksgA
# 2: RBAM_000510___ksgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 886
# Identity: 717/886 (80.9%)
# Similarity: 717/886 (80.9%)
# Gaps: 11/886 ( 1.2%)
# Score: 2890.5
#
#
#=======================================
BSNT_00078___ 1 ATG---AATAAAGATATTGCGACACCGATTAGAACGAAAGAGATACTGAA 47
||| |||||||||||.||||||||.||.||||||||.||.||.|||||
RBAM_000510__ 1 ATGAACAATAAAGATATCGCGACACCTATCAGAACGAAGGAAATTCTGAA 50
BSNT_00078___ 48 GAAATACGGTTTTTCTTTTAAAAAGAGCTTAGGACAGAATTTCTTAATTG 97
.||.||||||||.||||||||||||||..|.|||||||||||||||||||
RBAM_000510__ 51 AAAGTACGGTTTCTCTTTTAAAAAGAGTCTGGGACAGAATTTCTTAATTG 100
BSNT_00078___ 98 ATACGAACATTTTAAACAGAATTGTTGATCACGCGGAAGTGACGGAGAAA 147
||||.||.||.||..||||||||||.||.||.||||||.|.|||||....
RBAM_000510__ 101 ATACAAATATATTGGACAGAATTGTGGACCATGCGGAAATTACGGATCGG 150
BSNT_00078___ 148 ACAGGTGTCATTGAAATCGGCCCGGGAATCGGGGCTTTAACCGAACAGCT 197
||.||.||||||||||||||.||.||||||||.||..|.||.||.|||||
RBAM_000510__ 151 ACCGGAGTCATTGAAATCGGGCCCGGAATCGGCGCGCTGACAGAGCAGCT 200
BSNT_00078___ 198 TGCCAAGCGGGCGAAAAAGGTCGTGGCATTTGAGATTGACCAGCGATTAT 247
||||||.|||||||||||||||||.||.|||||.|||||.|||||..|..
RBAM_000510__ 201 TGCCAAACGGGCGAAAAAGGTCGTCGCGTTTGAAATTGATCAGCGCCTGC 250
BSNT_00078___ 248 TGCCGATTCTGAAGGATACACTGTCACCTTACGAAAATGTCACTGTCATT 297
||||.|||||.||.|||||.|||||.||.||.||.|||||.||..|||||
RBAM_000510__ 251 TGCCCATTCTCAATGATACGCTGTCTCCATATGACAATGTAACGATCATT 300
BSNT_00078___ 298 CATCAGGACGTGTTAAAGGCTGATGTCAAATCAGTCATTGAAGAACAATT 347
|||||.||.|||.|.||.||.||.||.|||||.|||||||||||.||.||
RBAM_000510__ 301 CATCAAGATGTGCTGAAAGCAGACGTTAAATCTGTCATTGAAGAGCAGTT 350
BSNT_00078___ 348 TCAAGATTGTGATGAGATCATGGTAGTTGCCAACCTTCCTTATTACGTAA 397
|||.|||||||||||.||.|||||....||.||.||.||.|||||.||.|
RBAM_000510__ 351 TCAGGATTGTGATGAAATTATGGTGACGGCGAATCTCCCATATTATGTGA 400
BSNT_00078___ 398 CAACACCGATTATCATGAAACTGCTTGAAGAACATCTTCCGCTGAAAGGG 447
|.||.|||||.||||||||.||..|.|||||||||||||||.|.|||||.
RBAM_000510__ 401 CGACGCCGATCATCATGAAGCTTTTGGAAGAACATCTTCCGTTAAAAGGA 450
BSNT_00078___ 448 ATTGTGGTTATGCTGCAAAAAGAAGTGGCTGAGCGCATGGCGGCTGATCC 497
|||||.||.||||||||||||||.||.||||||||.|||||.||||||||
RBAM_000510__ 451 ATTGTCGTGATGCTGCAAAAAGAGGTCGCTGAGCGGATGGCCGCTGATCC 500
BSNT_00078___ 498 TTCATCTAAGGAATACGGCTCGCTTTCAATCGCGGTGCAGTTTTATACAG 547
|||.||||||||.|||||.||||||||.||.|||||.|||||.|||||.|
RBAM_000510__ 501 TTCCTCTAAGGAGTACGGATCGCTTTCCATTGCGGTTCAGTTCTATACGG 550
BSNT_00078___ 548 AAGCCAAAACGGTGATGATCGTCCCGAAAACCGTATTTGTTCCTCAGCCT 597
|.||||||||.||.||||.||||||||||||.||.|||||.|||||||||
RBAM_000510__ 551 AGGCCAAAACCGTCATGACCGTCCCGAAAACGGTGTTTGTGCCTCAGCCT 600
BSNT_00078___ 598 AATGTCGATTCCGCAGTCATTCGTCTGATTCTCCGAGACGGCCCGGCAGT 647
|||||||||||.||.|||||.|||||..|.||.||.|||||||||||.||
RBAM_000510__ 601 AATGTCGATTCTGCCGTCATCCGTCTCTTGCTTCGTGACGGCCCGGCGGT 650
BSNT_00078___ 648 GGACGTGGAAAACGAATCCTTTTTCTTTCAGCTCATCAAGGCAAGCTTTG 697
.|||||.||.||.|||.|.||||||||.|||||.||.||.||||||||.|
RBAM_000510__ 651 TGACGTCGATAATGAACCGTTTTTCTTCCAGCTGATTAAAGCAAGCTTCG 700
BSNT_00078___ 698 CACAGCGCCGTAAAACGCTGCTCAATAACTTAGTTAACAATCTGCCTGAA 747
||||||||||.|||||..||||.||.|||.|.||.||||||||.||.|..
RBAM_000510__ 701 CACAGCGCCGGAAAACCTTGCTTAACAACCTTGTGAACAATCTTCCGGGC 750
BSNT_00078___ 748 GGAAAAGCACAAAAA---TCAACGATTGAACAAGTGCTCGAAGAAACAAA 794
||||||| |.||||| |||| ||||||.||||.||..|||||||.||
RBAM_000510__ 751 GGAAAAG-AGAAAAAAGCTCAA--ATTGAAGAAGTTCTTCAAGAAACGAA 797
BSNT_00078___ 795 TATTGACGGTAAGCGCCGAGGTGAATCCCTGTCTATTGAGGAATTCGCAG 844
|||||||||.|||||.||.||||||||||||||.||.||.|||||||| |
RBAM_000510__ 798 TATTGACGGAAAGCGGCGCGGTGAATCCCTGTCCATAGAAGAATTCGC-G 846
BSNT_00078___ 845 C-GCTGTCTAACGGATTGTATAAAGCCCTTTTCTAA 879
| .|||||.|||||||||.|||||||||||||||||
RBAM_000510__ 847 CTCCTGTCCAACGGATTGCATAAAGCCCTTTTCTAA 882
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