Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00035 and RBAM_000220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:48
# Commandline: needle
# -asequence dna-align/BSNT_00035___yaaI.1.9828.seq
# -bsequence dna-align/RBAM_000220___yaaI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00035___yaaI-RBAM_000220___yaaI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00035___yaaI-RBAM_000220___yaaI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00035___yaaI
# 2: RBAM_000220___yaaI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 572
# Identity: 424/572 (74.1%)
# Similarity: 424/572 (74.1%)
# Gaps: 46/572 ( 8.0%)
# Score: 1575.0
#
#
#=======================================
BSNT_00035___ 1 TTGT-----CCAAAGCAGATACAGCCCTTCTCATTGTAGACATGATCAAT 45
|||| ||.|| || |.|||||||||||.|||||.||.|||||.||.
RBAM_000220__ 1 TTGTCTGAACCTAA-CA-ACACAGCCCTTCTGATTGTCGATATGATTAAC 48
BSNT_00035___ 46 AATTTTGAATTCGATATGGGAGAAACCCTCGCTAAAAAAACAGAAAAAAT 95
||||||.||||.||||||||.|||...||.|||.|||||||..||.||||
RBAM_000220__ 49 AATTTTCAATTTGATATGGGCGAACGTCTTGCTGAAAAAACCAAACAAAT 98
BSNT_00035___ 96 CGTTCCTCATATTTTATCATTAAAGGAGCACGCGAGACAAAATGAATGGC 145
.||.||.|.||||||||||||||||.||||.||.|.||||||..|.||||
RBAM_000220__ 99 TGTCCCCCGTATTTTATCATTAAAGAAGCATGCAAAACAAAACAACTGGC 148
BSNT_00035___ 146 CGATTATTTACATCAATGATCATTATGGACTTTGGCAAGCTGACATTAAA 195
||||||||||.||.|||||||||||.||.||.|||.|.|||||.|||.|.
RBAM_000220__ 149 CGATTATTTATATTAATGATCATTACGGGCTCTGGAAGGCTGATATTGAT 198
BSNT_00035___ 196 AACATTCA-GCAAGAATGCACAAATGAAAGAAGC------------AAGG 232
..|| ||| |.|.|||||||..||.||.|||||| ||.|
RBAM_000220__ 199 GCCA-TCAGGGAGGAATGCAGCAACGACAGAAGCGCCCCCATTATAAAAG 247
BSNT_00035___ 233 ATAT----CATCACAAAGATAGCTCCGAAAGATGCTGATTATTTTTTAAT 278
|||| |.||| .||| |.||||||||||.|.||
RBAM_000220__ 248 ATATTTCGCCTCA----------GCCG------GATGATTATTTTCTCAT 281
BSNT_00035___ 279 CAAACCGAAACATTCCGCTTTCTACGAAACTGCACTTCACACCCTTCTTA 328
.||||||||.|||||||||||.||||||||.||.||||||||||||||.|
RBAM_000220__ 282 TAAACCGAAGCATTCCGCTTTTTACGAAACGGCGCTTCACACCCTTCTGA 331
BSNT_00035___ 329 CTGAGTTGCAGGTGAGACATATTA-TCTTAACAGGTATAGCCGGCAATAT 377
|.||.||.||.|||| ||..|||| ||.|.||.||.||.|||||.||.||
RBAM_000220__ 332 CCGAATTACAAGTGA-ACCGATTAGTCATCACGGGGATTGCCGGGAACAT 380
BSNT_00035___ 378 ATGTGTGCTGTTTACTGCTAATGACGCTTATATGAGGGAATACAGCATCA 427
.|||||||||||.||.||.||.|||||.||||||||.|||||||||||..
RBAM_000220__ 381 TTGTGTGCTGTTCACGGCCAACGACGCCTATATGAGAGAATACAGCATTG 430
BSNT_00035___ 428 CGATTCCTAAGGACTGTATCGCGTCAAACAGTGACGAAGATAACGAATTC 477
|.|||||.||.|||||.|.|||.||.||.|..||||||||.||.||.|||
RBAM_000220__ 431 CCATTCCGAAAGACTGCACCGCTTCCAATAACGACGAAGACAATGATTTC 480
BSNT_00035___ 478 GCCTTAACTATGATGGAGAATGTTCTTTTCGCAGAAATTACGACGGAAGA 527
||.||.||.|||||||||||||||||.|||||||||||.||.||||||.|
RBAM_000220__ 481 GCTTTGACCATGATGGAGAATGTTCTCTTCGCAGAAATAACCACGGAAAA 530
BSNT_00035___ 528 ACAAATTA---CAGAAAAATAA 546
|||||||| |.|||||||||
RBAM_000220__ 531 ACAAATTACCGCCGAAAAATAA 552
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