Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06141 and RBAM_000170
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:37
# Commandline: needle
# -asequence dna-align/BSNT_06141___yxaA.1.9828.seq
# -bsequence dna-align/RBAM_000170___glxK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06141___yxaA-RBAM_000170___glxK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06141___yxaA-RBAM_000170___glxK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06141___yxaA
# 2: RBAM_000170___glxK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1292
# Identity: 754/1292 (58.4%)
# Similarity: 754/1292 (58.4%)
# Gaps: 289/1292 (22.4%)
# Score: 1936.0
#
#
#=======================================
BSNT_06141___ 1 ATGAAAATCATCATTGCACCTGATTCTTTTAAGGAAAGCTTATCAGCTCT 50
|||||||||||.||||||||.||||||||.||.||||||.|..||.|...
RBAM_000170__ 1 ATGAAAATCATTATTGCACCGGATTCTTTCAAAGAAAGCATGACATCAAA 50
BSNT_06141___ 51 GGAGGCAGCCGA-AGCGATAGAAAGAGGTTTCAAATCGGTCTTTCCGGGT 99
.||.||.||.|| ||| |||||||.|||.||||||.|||||||.||.|..
RBAM_000170__ 51 AGAAGCCGCTGACAGC-ATAGAAAAAGGATTCAAAGCGGTCTTCCCTGAC 99
BSNT_06141___ 100 GCTGATTACAGAAAATTGCCGGTGGCGGATGGCGGCGAGGGAACCGTTCA 149
||.||.||.|..||..|.||.|.|||.||.|||||.||.|||||||||||
RBAM_000170__ 100 GCGGAATATATCAAGATACCCGCGGCCGACGGCGGAGAAGGAACCGTTCA 149
BSNT_06141___ 150 ATCTCTGGTCGATGCGACCAACGGAAGGATCATAGAGCAAGTTGTCACAG 199
..||.||...|||||.||...||||||.|||||..|..||..|||.||.|
RBAM_000170__ 150 GGCTTTGACGGATGCCACTGGCGGAAGCATCATCAAAAAAACTGTGACCG 199
BSNT_06141___ 200 GGCCGCTGGGGGAA--CCGGTGAGAGCTTTCTTTGGCAT---GA----TG 240
|.||||| ||||| |||||.|..|| .|||| || ||
RBAM_000170__ 200 GTCCGCT--GGGAATGCCGGTAAACGC-------CGCATATGGACTTCTG 240
BSNT_06141___ 241 GGAGATGGGAGAACAGCTGTGATTGAAATGGCTGCTGCTTCAGGGCTGCA 290
|||||.||..|.|||||.||.|||||||||||.|..||.||.||.||.||
RBAM_000170__ 241 GGAGACGGACGCACAGCAGTCATTGAAATGGCGGAAGCATCGGGACTTCA 290
BSNT_06141___ 291 TCTGGT-----GCCTGTAGATAAGCGAAATCCGCTCATCACTACAACAAG 335
|||.|| ||| ||....||.|||||.|.|.|||.||.|||||
RBAM_000170__ 291 TCTCGTTCCCCGCC-----ATCTCAGAGATCCGTTGAACACAACGACAAG 335
BSNT_06141___ 336 GGGAACGGGAGAATTAATCGGAGCAGCT----CTTGATGCGGGAGCGGAG 381
.||||||||.|||.|.|| |||||.| |||...||||| |||| |
RBAM_000170__ 336 AGGAACGGGTGAACTGAT---AGCAGATGCAGCTTCCCGCGGG-GCGG-G 380
BSNT_06141___ 382 CGA-TTGATCATCGGAATCGGCGGAAGCGCCACGAACGACGGGGGAGCCG 430
.|| .|.||||||||..|.|||||.|||||.||.||.|||||.|||.|.|
RBAM_000170__ 381 TGAGATCATCATCGGGCTTGGCGGGAGCGCAACCAATGACGGCGGAACAG 430
BSNT_06141___ 431 GGATGATTCAGGCATTGGGCG--------GAAGGCTTCTTGATAACTCAG 472
|.|| ||| |.||| |...|.|||| |||.|.||
RBAM_000170__ 431 GAAT------GGC---GAGCGCGCTCGGTGTGCGTTTCT---TAAATGAG 468
BSNT_06141___ 473 G-----CAGCGAGAT------TGGCCCAGGGGGCGGCGCGTTATCT---C 508
| ||| ||||| |||| ||.||||| ||| |
RBAM_000170__ 469 GAAGGTCAG-GAGATACCTGATGGC------GGAGGCGC----TCTGCAC 507
BSNT_06141___ 509 A-GCTTGCATCAATAGATGTTGGCGGGCT-TGATTCCAGATTGCGGAATG 556
| .||.||.||.||.|||.|..||||.|| | .|||.|||
RBAM_000170__ 508 ACCCTAGCTTCTATTGATATAAGCGGTCTCT--CTCCTGAT--------- 546
BSNT_06141___ 557 TCAAACTGGAA-------GT-----TGCC---TGTGACGTGGACAATCCG 591
|||.|| || |||| |||||.||.||.|||||.
RBAM_000170__ 547 -----CTGAAACATACCCGTATCCGTGCCGCATGTGATGTCGAAAATCCT 591
BSNT_06141___ 592 TTAACAGGACCAAAGGGTGC----TACGGCTGTTTTCGGACCGCAAAAAG 637
.|.||.||...|||.||.|| || |||.|||||.||||||||||
RBAM_000170__ 592 CTGACCGGTAAAAACGGCGCGTCATA----TGTCTTCGGCCCGCAAAAAG 637
BSNT_06141___ 638 GCGCGACGGCCGACATG-CT--GGATGTACTAGAACAGAACGTAAACCAT 684
| |.|..||||.|.| || .|.||||.|.||.|..|||.||..||||
RBAM_000170__ 638 G---GGCATCCGAGAAGACTAAAGTTGTATTGGATCGCAACTTACGCCAT 684
BSNT_06141___ 685 TTCGCTGA--TAT------GACAGAA-------AAAGAGCTCGGATCAAC 719
|||||||| ||| |.|||.| .||| ||||| ||
RBAM_000170__ 685 TTCGCTGACGTATTGAGACGTCAGCACGATATCGAAG----CGGAT--AC 728
BSNT_06141___ 720 CTTCCGAGATACAGAGGGCGCCGGTGCAGCGGGCGGTCTTGGATGGAGCC 769
|.| |.|.|||||.||.||.||.||.||.|| .||.|||
RBAM_000170__ 729 CGT---------AAAAGGCGCGGGCGCCGCAGGGGGACT----GGGCGCC 765
BSNT_06141___ 770 TG-CTGA---CTTATTTTCAGGCTGACCTGAAAAGAGGCATTGATATTGT 815
.| |||| |||..||.|||||.||.||..||||.||.||||||.||||
RBAM_000170__ 766 GGACTGATCGCTTTCTTACAGGCAGAACTTCAAAGCGGGATTGATGTTGT 815
BSNT_06141___ 816 CCTTGAAGCGGTTGATTTTGAAAATA-----TCGT--TCAG----GAT-- 852
||| |.||| ||.| |||| |||
RBAM_000170__ 816 --------------ATT----AGATACACTGTCCTTCTCAGATCAGATAA 847
BSNT_06141___ 853 -----GCAGATCTTGTGATTACCGGCGAGGGAAGGATCGACAGCCAAACG 897
||.||.|||||.||||||||.|||||...|||.|||.|.||||||
RBAM_000170__ 848 GAGGCGCTGACCTTGTCATTACCGGAGAGGGGCAGATAGACGGACAAACG 897
BSNT_06141___ 898 GTTCAT--GGAAAAACGCC------GATCGGCGTAGCCAAGGCG-----G 934
.| || ||.|||||.|| |||||.|| .|.||| |
RBAM_000170__ 898 AT--ATTCGGCAAAACCCCCGCCGGGATCGCCG-----CACGCGCATCTG 940
BSNT_06141___ 935 CTAAATCATATGATGTGCCCGTCATCGGTATT-GCGGGATC--------A 975
||.|| ||..|.|||||.||| |.||| |||||.|| |
RBAM_000170__ 941 CTCAA------GAAATTCCCGTTATC-GCATTGGCGGGCTCCTTAGGCAA 983
BSNT_06141___ 976 GTATCACGAGACAGTGATGCCGTCTATCAACAC-GGAAT--CGATGCGC- 1021
..||..||||..||| |..||.|.| ||||| || ||
RBAM_000170__ 984 AAATTTCGAGCAAGT---------TTACAGCGCAGGAATAACG----GCT 1020
BSNT_06141___ 1022 ---TTTTCAGCATCGTTCCCGGAGCCGTGCCGCTAGAAGACGCGTTTGAA 1068
||||| .|||||.||.||.||.||....||.||||||||.|| |.
RBAM_000170__ 1021 GTATTTTC--TATCGTGCCGGGTGCTGTAAGTCTTGAAGACGCCTT--AG 1066
BSNT_06141___ 1069 CATGCCGCGGAATATA---TGGAAAGAACGGCGCGGGACATTGCAGCGAC 1115
|||.|.||.| .|.|| |.|||||.||.||.||| |.|||.||..|
RBAM_000170__ 1067 CATCCGGCCG-TTTTAACCTTGAAAGCACAGCCCGG---AATGCCGCCGC 1112
BSNT_06141___ 1116 TAT--------CAAATTGGCGAAAACGATGTTTCTGATATAG 1149
|.| || ||.||||.|..| |...|.|||
RBAM_000170__ 1113 TCTATACCGGGCA-----GCAAAAAAGGCG---CGCCTCTAG 1146
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