Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00023 and RBAM_000130

See Amino acid alignment / Visit BSNT_00023 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:47
# Commandline: needle
#    -asequence dna-align/BSNT_00023___dacA.1.9828.seq
#    -bsequence dna-align/RBAM_000130___dacA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00023___dacA-RBAM_000130___dacA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00023___dacA-RBAM_000130___dacA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00023___dacA
# 2: RBAM_000130___dacA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1363
# Identity:    1019/1363 (74.8%)
# Similarity:  1019/1363 (74.8%)
# Gaps:          62/1363 ( 4.5%)
# Score: 3774.5
# 
#
#=======================================

BSNT_00023___      1 TTGAACATCAAGAAATGTAAACAGCTACTGATGTCATTGGTTGTGTTAAC     50
                     ||||||||||.||||||.||||||||..||.|||||||.||.||    ||
RBAM_000130__      1 TTGAACATCACGAAATGGAAACAGCTGTTGGTGTCATTAGTGGT----AC     46

BSNT_00023___     51 T----CTAGCTGTCACGTGTCTGGCTCCAATGTCAAAAGCAAAAGCAGCC     96
                     |    ||.||.|..||.||..|.|.|||.|||||.|||||..|.||||||
RBAM_000130__     47 TGGCACTGGCCGCAACTTGCTTTGTTCCGATGTCTAAAGCGGAGGCAGCC     96

BSNT_00023___     97 AGC---GATCCAATTGATATCAATGCATCTGCTGCTATTATGATCGAAGC    143
                     .||   ||.||.||||||.||||.|||||.|||||.||.|||||.||.||
RBAM_000130__     97 GGCAATGACCCGATTGATGTCAACGCATCAGCTGCGATAATGATTGAGGC    146

BSNT_00023___    144 TTCTTCAGGTAAAATTCTTTACAGTAAAAATGCAGATAAGAGACTGCCAA    193
                     |||.||.||.||||||.|.|||||||||||||||||.||.||||||||.|
RBAM_000130__    147 TTCATCGGGAAAAATTTTATACAGTAAAAATGCAGACAAAAGACTGCCGA    196

BSNT_00023___    194 TTGCGAGTATGACAAAAATGATGACAGAGTATCTGTTATTAGAAGCAATT    243
                     ||||.||.|||||||||||||||||.||.||||||.|..|.|||||.|||
RBAM_000130__    197 TTGCCAGCATGACAAAAATGATGACTGAATATCTGCTTCTGGAAGCCATT    246

BSNT_00023___    244 GATCAAGGTAAAGTGAAATGGGACCAAACCTATACGCCTGATGACTATGT    293
                     .|..||||.||||||||||||||.|||||.|||||.||||||||.|||||
RBAM_000130__    247 AAAGAAGGAAAAGTGAAATGGGATCAAACGTATACTCCTGATGATTATGT    296

BSNT_00023___    294 GTATGAAATTTCCCAAGATAACAGCTTATCAAACGTTCCTCTTCGGAAAG    343
                     .|||||||||||.|||||.|||||.|||||||||||.||.|||||.||||
RBAM_000130__    297 CTATGAAATTTCTCAAGACAACAGTTTATCAAACGTCCCCCTTCGAAAAG    346

BSNT_00023___    344 ACGGGAAATACACAGTAAAAGAATTATATCAAGCTACAGCAATTTATTCT    393
                     ||||.||||||||.||.||||||.|.|||||.||||..||.|||||.|||
RBAM_000130__    347 ACGGCAAATACACGGTTAAAGAACTGTATCAGGCTATGGCGATTTACTCT    396

BSNT_00023___    394 GCAAATGCTGCTGCTATTGCGATTGCAGAAATCGTTGCCGGTTCTGAAAC    443
                     ||.||.|..||.||.|||||..||||.|||||..|||||||..|||||||
RBAM_000130__    397 GCCAACGGAGCCGCGATTGCAGTTGCCGAAATTCTTGCCGGAACTGAAAC    446

BSNT_00023___    444 TAAGTTTGTTGAAAAAATGAATGCAAAAGCAAAAGAACTAGGCTTAACAG    493
                     .||.|||||.|...||||||||||.|||||.||||||.|||||.|.|||.
RBAM_000130__    447 GAAATTTGTCGCTGAAATGAATGCGAAAGCCAAAGAATTAGGCATGACAA    496

BSNT_00023___    494 ATTACAAATTTGTTAACGCAACAGGTCTTGAAAACAAAGATCTTCACGGG    543
                     |.||..|.|||...||.||.|||||.||||..||..||||.||||||||.
RBAM_000130__    497 ACTATGATTTTAAAAATGCCACAGGGCTTGTGAATGAAGACCTTCACGGC    546

BSNT_00023___    544 CATCAGCCTG--AGGGGACAAGCGTAAATGAAGAAAGTGAAGTTTCTGCA    591
                     .|.||||| |  |||.|| |.||||.||.|||||.||||||||||||||.
RBAM_000130__    547 AAGCAGCC-GCAAGGAGA-AGGCGTTAAAGAAGAGAGTGAAGTTTCTGCT    594

BSNT_00023___    592 AAGGATATGGCCATTCTTGCGGATCACCTGATTACTGACTACCCTGAGAT    641
                     ||.||.|||||..|||||||.||.|.||||||.|||||.||.||.||..|
RBAM_000130__    595 AAAGACATGGCGCTTCTTGCAGACCGCCTGATCACTGATTATCCGGAAGT    644

BSNT_00023___    642 ACTGGAGACTTCCAGTATCGCCAAAACGAAATTCAGAGAAGGCACCGATG    691
                     .||..|.||..|.||.|||||.||.|||||||||||||..|||||.||||
RBAM_000130__    645 TCTCAAAACAACAAGCATCGCTAAGACGAAATTCAGAGCCGGCACTGATG    694

BSNT_00023___    692 ATGAAATGGACATGCCGAACTGGAATTTTATGCTGAAGGGGCTTG--TCA    739
                     |||||||||||||||||||||||||.||.|||.|.||.||.||||  ||.
RBAM_000130__    695 ATGAAATGGACATGCCGAACTGGAACTTCATGTTAAAAGGTCTTGTTTCT    744

BSNT_00023___    740 GCGAGTATAAAAAAGCGACT---GTAGACGGACTGAAAACAGGTTCTACT    786
                     |         ||.|.|  ||   ||.|||||..|.|||||.|||||||||
RBAM_000130__    745 G---------AATACC--CTGGCGTTGACGGCTTAAAAACGGGTTCTACT    783

BSNT_00023___    787 GACTCTGCGGGTTCATGCTTTACAGGAACAGCTGAACGCAACGGTATGCG    836
                     ||.||||||||.||.||.||||||.|.|||||..|.||.|||||.|||||
RBAM_000130__    784 GATTCTGCGGGATCTTGTTTTACAAGCACAGCACAGCGGAACGGAATGCG    833

BSNT_00023___    837 TGTCATCACTGTTGTATTATACGCAAAGGGCAACCTTCATACAGGCCGTT    886
                     .||||||||.|||||||||.|||||||.||||||||.|||||.||.||||
RBAM_000130__    834 GGTCATCACCGTTGTATTAAACGCAAAAGGCAACCTGCATACCGGACGTT    883

BSNT_00023___    887 TCGATGAAACGAAGAAAATGTTTGATTATGCTTT---CGACAATTTCTCC    933
                     |.|||||||||||.||||||.|.|||||.||.||   |..|||||||||.
RBAM_000130__    884 TTGATGAAACGAAAAAAATGCTCGATTACGCATTTAACAGCAATTTCTCA    933

BSNT_00023___    934 ATGAAAGAAATTTATGCTGAAGGCGATCAAGTAAAAGGCCATAAAACAGT    983
                     ||||||||..||||..||||||||..||||||||||||.||.||||| |.
RBAM_000130__    934 ATGAAAGATCTTTACCCTGAAGGCTCTCAAGTAAAAGGGCACAAAAC-GA    982

BSNT_00023___    984 TTCA-GTTGATAAGGGTAAAGAGAAAGAAGTAGGCATTGTGACAAACAAG   1032
                     ||.| |||||.||.||.|||||.||..||||.|..|||||.||..|||||
RBAM_000130__    983 TTGACGTTGAAAAAGGGAAAGACAAGCAAGTCGATATTGTTACTGACAAG   1032

BSNT_00023___   1033 GCGTTCTCTCTTCCTGTCAAAAATGGTGAGGAAAAGAATTACAAAG-CGA   1081
                     |||.|.|||.|||||||.||||..||.||.||||||||.||.|||| |||
RBAM_000130__   1033 GCGCTTTCTATTCCTGTGAAAAGCGGGGATGAAAAGAACTATAAAGCCGA   1082

BSNT_00023___   1082 AGGTCACACTGAATAAAGATAACTTAACTGCTCCTGTGAAAAAAGGAACC   1131
                     | ||.||..|..|||||.|..|..|.||.||||||||||||||.|||||.
RBAM_000130__   1083 A-GTGACTTTAGATAAAAAAGAAATCACGGCTCCTGTGAAAAAGGGAACG   1131

BSNT_00023___   1132 AAGGTTGGGAAGCTGACTGCGGAATACACAGGTGATGAAAAGGATTACGG   1181
                     ||.||.||.|.||||||.|....|||||.|||...|||.||.||.||.||
RBAM_000130__   1132 AAAGTCGGAACGCTGACAGTTACATACAAAGGCAGTGACAAAGACTATGG   1181

BSNT_00023___   1182 ATTCCTTAA------------CAGCGATCTGGCTGGTGTAGACCTTGTTA   1219
                     .|||||.||            ||||            ||..|.|||||.|
RBAM_000130__   1182 CTTCCTCAAATCCAAAGAGTTCAGC------------GTGAATCTTGTAA   1219

BSNT_00023___   1220 CAAAAGAAAATGTAGAAAAAGCAAACTGGTTTGTTTTGACAATGCGCAGT   1269
                     |.|||.|..|||||||.||||||||||||||||||..||..||||||.|.
RBAM_000130__   1220 CGAAAAATGATGTAGATAAAGCAAACTGGTTTGTTCAGATGATGCGCGGC   1269

BSNT_00023___   1270 ATCGGCGGATTTTTTGCCGGAATTTGGGGAAGCATTGTTGATACGGTAAC   1319
                     |||||||||||.||..||||.||.|||...|||...|||||.||||||||
RBAM_000130__   1270 ATCGGCGGATTCTTCTCCGGTATCTGGAACAGCGCCGTTGACACGGTAAC   1319

BSNT_00023___   1320 CGGCTGGTTTTAA   1332
                     .||||||||||||
RBAM_000130__   1320 AGGCTGGTTTTAA   1332


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