Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06178 and BSU40270

See Amino acid alignment / Visit BSNT_06178 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:47
# Commandline: needle
#    -asequence dna-align/BSNT_06178___yycP.1.22522.seq
#    -bsequence dna-align/BSU40270___yycP.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06178___yycP-BSU40270___yycP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06178___yycP-BSU40270___yycP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06178___yycP
# 2: BSU40270___yycP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1164
# Identity:    1093/1164 (93.9%)
# Similarity:  1093/1164 (93.9%)
# Gaps:           6/1164 ( 0.5%)
# Score: 5192.5
# 
#
#=======================================

BSNT_06178___      1 ATGAAAAAGTGGATGATTACCATCGCCATGCTGATTCTCGCAGGAATCGC     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU40270___yy      1 ATGAAAAAGTGGATGATTACCATCGCCATGCTGATTCTCGCAGGAATCGC     50

BSNT_06178___     51 ACTATTTGTCTTCATTTTTCCT------AGCCATAAAACTGTAAGTCACC     94
                     |||||||||||||||||.||||      |||||||||||.||.|||||.|
BSU40270___yy     51 ACTATTTGTCTTCATTTCTCCTCTCAAAAGCCATAAAACCGTGAGTCAGC    100

BSNT_06178___     95 AGGATCTTCGAGACTCCGGTTTCTTGGATGACAAAGAAGTCCTGTTATAT    144
                     |||||||..||.|..|||.||||.||||||||||||||||||||.|.|||
BSU40270___yy    101 AGGATCTCAGAAATCCCGATTTCCTGGATGACAAAGAAGTCCTGCTGTAT    150

BSNT_06178___    145 TTTTCAACCTCTGCGGATCAAGATGCATTTGGCGGCGGGAAAAGCTATGC    194
                     ||.|||.||||||||||||||||||||||||||||||||||||||||.||
BSU40270___yy    151 TTCTCATCCTCTGCGGATCAAGATGCATTTGGCGGCGGGAAAAGCTACGC    200

BSNT_06178___    195 CTTGTTTATCAGCCAGGACGGGTCGCTGTCTTCCTTTCAGATGAAGGGCC    244
                     |.|||||||||||||.||||||.|||||||||||||||||||||||||||
BSU40270___yy    201 CCTGTTTATCAGCCATGACGGGACGCTGTCTTCCTTTCAGATGAAGGGCC    250

BSNT_06178___    245 TTGAGCTGGGATCAGCCAAGGTTCACGGCGACAGTGTGATGCTGGAGGAC    294
                     ||||||||||.|||||.|||||||||||.|||||.|||||||||||||||
BSU40270___yy    251 TTGAGCTGGGCTCAGCAAAGGTTCACGGTGACAGCGTGATGCTGGAGGAC    300

BSNT_06178___    295 AAAAACAAGATTTATACGATCAAAAACGGTCTGCGCTCCCATAAAAGAAC    344
                     |||||||.|||||||||||||||||||||.||||||||||||||||||||
BSU40270___yy    301 AAAAACACGATTTATACGATCAAAAACGGCCTGCGCTCCCATAAAAGAAC    350

BSNT_06178___    345 CTATCAGCACACAGGCGACAGCGCAGGCTTTCTGCAAAACACGGACGGCT    394
                     ||||||||||||||||||||||||.|||||||||||||||||||||||||
BSU40270___yy    351 CTATCAGCACACAGGCGACAGCGCGGGCTTTCTGCAAAACACGGACGGCT    400

BSNT_06178___    395 TTTATACCTTATACAACTCCGGCTACGACAAAAAGGGAGACGGGTACCGC    444
                     ||||.||||||||||||||||||||||||||||||||||||||.||||||
BSU40270___yy    401 TTTACACCTTATACAACTCCGGCTACGACAAAAAGGGAGACGGATACCGC    450

BSNT_06178___    445 TCAGAGCTGTACCGCCAGATGAACGGAGAGTGGAAAAAAGACGTCATCCC    494
                     |||||||||||||||||.|||.||||||||||||||||||||||||||||
BSU40270___yy    451 TCAGAGCTGTACCGCCAAATGGACGGAGAGTGGAAAAAAGACGTCATCCC    500

BSNT_06178___    495 CTACTACATCCGGGCCTCCGGTTTTCATAAGGGCACCATTTACGCACTCG    544
                     ||||||||||||.|||||||||||.|||.|.|||.|||||||||||||||
BSU40270___yy    501 CTACTACATCCGAGCCTCCGGTTTCCATGATGGCGCCATTTACGCACTCG    550

BSNT_06178___    545 TTCCGACAACTGACGAAAAAGGTTATCAGCTCCTTCAGATTCAAGCAGAT    594
                     |.||||||..|||||.||||||.|||||||||||||||||||||||||||
BSU40270___yy    551 TCCCGACAGATGACGGAAAAGGCTATCAGCTCCTTCAGATTCAAGCAGAT    600

BSNT_06178___    595 CAAAGGAAGCTCACTTATCACAAGATAACAGAATGGCAGTACCGGGAAGG    644
                     ||.|.||||||.||.||||.||..|||||.||||||||||||||||||||
BSU40270___yy    601 CAGAAGAAGCTTACCTATCTCAGCATAACGGAATGGCAGTACCGGGAAGG    650

BSNT_06178___    645 AGCCTCAGTCGAATCCCAGCTTGCTGTGGACGACCAAGCTGTTTATGTTA    694
                     ||||||||||||||||||.|||||.|||||||||||||||||.|||||||
BSU40270___yy    651 AGCCTCAGTCGAATCCCAACTTGCCGTGGACGACCAAGCTGTGTATGTTA    700

BSNT_06178___    695 TGGTTCGCGGCCAAAAAGCCCGCAATCTCTATCAAATGGTCAAGATCAAC    744
                     |||||||||||||||||||||.|.||||||||||||||||||||||||||
BSU40270___yy    701 TGGTTCGCGGCCAAAAAGCCCACGATCTCTATCAAATGGTCAAGATCAAC    750

BSNT_06178___    745 AAAAAAAGCGGCAAAGTAGAGCTGCACGACATCGACGAATACAAAAACGA    794
                     ||||||||||||.||||||||||||||||.||||.|||||||||||||||
BSU40270___yy    751 AAAAAAAGCGGCGAAGTAGAGCTGCACGATATCGCCGAATACAAAAACGA    800

BSNT_06178___    795 CGAACAAACGATATACAGCTCCATGCCCTTCAGCTTTAAAAACAGCTTTT    844
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU40270___yy    801 CGAACAAACGATATACAGCTCCATGCCCTTCAGCTTTAAAAACAGCTTTT    850

BSNT_06178___    845 TCCCTTATGACGGGAACCTGTATTTCATTGACGGCTTCGGAAAGGTACAC    894
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU40270___yy    851 TCCCTTATGACGGGAACCTGTATTTCATTGACGGCTTCGGAAAGGTACAC    900

BSNT_06178___    895 AAAATTGATGCCAAGACAGGAAAAACAAGCATCGCCTTCACCTTTTCCCA    944
                     |||||.||||||||||||||||||||||||||||.|||||||.||||||.
BSU40270___yy    901 AAAATCGATGCCAAGACAGGAAAAACAAGCATCGTCTTCACCCTTTCCCC    950

BSNT_06178___    945 GGACAAAATGAAAGCCGATTTCAAAGAAATCACCCAAAAAGGCAGCAGCC    994
                     ||||||||||||||||||.|||||||||||||||||||||||||||||||
BSU40270___yy    951 GGACAAAATGAAAGCCGAATTCAAAGAAATCACCCAAAAAGGCAGCAGCC   1000

BSNT_06178___    995 TCTATTTCTTCACATACACGCATAACAAGCCTGCCTACATTGAACAGTAC   1044
                     ||||||||||||||||||||.||.||||||||||||||||||||||||||
BSU40270___yy   1001 TCTATTTCTTCACATACACGTATCACAAGCCTGCCTACATTGAACAGTAC   1050

BSNT_06178___   1045 AGCCTGAAAACCGGAAAGAAATTGAAAGAAAAAGAGATTGGGAAGGTAAA   1094
                     |||||||||||||||||||||.||||||||||||||||||||||||||||
BSU40270___yy   1051 AGCCTGAAAACCGGAAAGAAAATGAAAGAAAAAGAGATTGGGAAGGTAAA   1100

BSNT_06178___   1095 GGATGTCGTGACGCCGAAGAGTCATTTGAAGCTGTATGATTTTGAGGTGA   1144
                     ||||||||||||||||||||||||||||||||||||||||.|||||||||
BSU40270___yy   1101 GGATGTCGTGACGCCGAAGAGTCATTTGAAGCTGTATGATGTTGAGGTGA   1150

BSNT_06178___   1145 TGAAGAGGTTTTAA   1158
                     ||||||||||||||
BSU40270___yy   1151 TGAAGAGGTTTTAA   1164


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