Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03851 and BSU39280

See Amino acid alignment / Visit BSNT_03851 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:56
# Commandline: needle
#    -asequence dna-align/BSNT_03851.1.22522.seq
#    -bsequence dna-align/BSU39280___yxxE.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03851-BSU39280___yxxE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03851-BSU39280___yxxE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03851
# 2: BSU39280___yxxE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 352
# Identity:     193/352 (54.8%)
# Similarity:   193/352 (54.8%)
# Gaps:         104/352 (29.5%)
# Score: 491.5
# 
#
#=======================================

BSNT_03851         1 ATGGATGAAAGTTA-TGATTTC-TTAGACGAATTAGAA------------     36
                             |.|||| |||  || .||.||     ||||            
BSU39280___yx      1 --------ATGTTATTGA--TCAATAAAC-----AGAAGGACCCTGTTTT     35

BSNT_03851        37 -AATTTTTTAGGTGGAACATTTCATCAAGATATCCAATCGCCTGAACACG     85
                      .|.|||||||.|||||||||.|||||||||||..||.|.|||||..|||
BSU39280___yx     36 TCAGTTTTTAGCTGGAACATTCCATCAAGATATTGAAACTCCTGATGACG     85

BSNT_03851        86 CATTAGACGA---ATTTATTGAGGAAATTA--------GTAGAGCAGGTT    124
                     |..||.|.||   |||.||.|||||||.||        .|.|||.|    
BSU39280___yx     86 CTATACAAGAGTTATTAATAGAGGAAAGTAAGGAATATTTGGAGGA----    131

BSNT_03851       125 TGCTATTTACAGTAGAGTATTGCGAA--GAGTTTCT--AAA--TAGCAAT    168
                     |||||||         ||.||...||  ||.|||.|  |||  .||||.|
BSU39280___yx    132 TGCTATT---------GTCTTTTTAACGGATTTTATTGAAAGTGAGCATT    172

BSNT_03851       169 CTAACTGAAGAAG-AAAAGGAAGACATTATAAAGTGTAAT-----ACAGA    212
                     |..||  ||.||| ||||.||..|||||        .|||     .||||
BSU39280___yx    173 CAGAC--AATAAGAAAAACGATTACATT--------CAATCTTGCGCAGA    212

BSNT_03851       213 ---AATATATTTCCCGGC----AATTGGATTACCACCAATAGAATGGTTG    255
                        ..|.|||.|.||.||    |||    |||..|||||||||.|||.|.
BSU39280___yx    213 TGGCGTGTATCTTCCTGCGTTTAAT----TTAGAACCAATAGATTGGCTA    258

BSNT_03851       256 AAAAGTGTAATAGAACAACTAAAAGAAG-CT--------ATTTAA-----    291
                     ||.|.||||||||.|||..| ||||||| ||        ||||||     
BSU39280___yx    259 AAGAATGTAATAGTACAGAT-AAAGAAGTCTTTAAAAAAATTTAAACGGT    307

BSNT_03851       291 --    291
                       
BSU39280___yx    308 AA    309


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