Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05478 and BSU35930

See Amino acid alignment / Visit BSNT_05478 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:24
# Commandline: needle
#    -asequence dna-align/BSNT_05478___rbsD.1.22522.seq
#    -bsequence dna-align/BSU35930___rbsD.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05478___rbsD-BSU35930___rbsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05478___rbsD-BSU35930___rbsD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05478___rbsD
# 2: BSU35930___rbsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 396
# Identity:     388/396 (98.0%)
# Similarity:   388/396 (98.0%)
# Gaps:           0/396 ( 0.0%)
# Score: 1908.0
# 
#
#=======================================

BSNT_05478___      1 ATGAAAAAACACGGTATACTGAACAGCCATCTTGCCAAGATTTTAGCAGA     50
                     |||||||||||||||||||||||||||||||||||||||||||||||.||
BSU35930___rb      1 ATGAAAAAACACGGTATACTGAACAGCCATCTTGCCAAGATTTTAGCCGA     50

BSNT_05478___     51 CCTTGGCCACACTGATAAAATTGTCATCGCGGATGCCGGACTGCCGGTTC    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU35930___rb     51 CCTTGGCCACACTGATAAAATTGTCATCGCGGATGCCGGACTGCCGGTTC    100

BSNT_05478___    101 CCGACGGCGTTTTGAAAATTGATCTTTCACTGAAGCCGGGCCTTCCGGCT    150
                     |.||||||||||||||||||||||||||||||||||||||||||||||||
BSU35930___rb    101 CTGACGGCGTTTTGAAAATTGATCTTTCACTGAAGCCGGGCCTTCCGGCT    150

BSNT_05478___    151 TTCCAAGATACAGCGGCAGTACTGGCTGAGGAAATGGCGGTCGAAAAAGT    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU35930___rb    151 TTCCAAGATACAGCGGCAGTACTGGCTGAGGAAATGGCGGTCGAAAAAGT    200

BSNT_05478___    201 CATTGCTGCAGCTGAAATAAAAGCATCCAATCAGGAGAATGCGAGATTTC    250
                     ||||||||||||||||||||||||||||||||||||||||||||.|||||
BSU35930___rb    201 CATTGCTGCAGCTGAAATAAAAGCATCCAATCAGGAGAATGCGAAATTTC    250

BSNT_05478___    251 TAGAAAATCTTTTCTCTGAACAAGAGATTGAATACCTTTCTCACGAGGAG    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU35930___rb    251 TAGAAAATCTTTTCTCTGAACAAGAGATTGAATACCTTTCTCACGAGGAG    300

BSNT_05478___    301 TTTAAGCTGCTGACAAAAGAAGCAAAGGCAGTCATAAGAACAGGAGAATT    350
                     ||||||||||||||||||||.|||||||||||||||||||||||||||||
BSU35930___rb    301 TTTAAGCTGCTGACAAAAGATGCAAAGGCAGTCATAAGAACAGGAGAATT    350

BSNT_05478___    351 CACACAGTATGCCAACTGCATCCTGCAGGCGGGTGTGCTTTTCTAG    396
                     |||||..|||||||||||||||||||||||.|||||.|||||||||
BSU35930___rb    351 CACACCATATGCCAACTGCATCCTGCAGGCAGGTGTACTTTTCTAG    396


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.