Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05465 and BSU35840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_05465___ywtF.1.22522.seq
# -bsequence dna-align/BSU35840___ywtF.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05465___ywtF-BSU35840___ywtF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05465___ywtF-BSU35840___ywtF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05465___ywtF
# 2: BSU35840___ywtF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1027
# Identity: 718/1027 (69.9%)
# Similarity: 718/1027 (69.9%)
# Gaps: 98/1027 ( 9.5%)
# Score: 2423.5
#
#
#=======================================
BSNT_05465___ 1 ATGGAGGAACGATTACAACACAAGAAGAAAAAGAGACGTCTGAAAAAATG 50
|||||.|||||||.|||.|.||..||||||||.|||...||.||||||||
BSU35840___yw 1 ATGGAAGAACGATCACAGCGCAGAAAGAAAAAAAGAAAACTAAAAAAATG 50
BSNT_05465___ 51 GGTGAAATTCACAAT-----CGGTTTGTTTGCTATTCTAATTATCGTAAC 95
|||||||.| | |||.||..|.|||.||.||.|.||.|...|
BSU35840___yw 51 GGTGAAAGT-----TGTTGCCGGATTAATGGCTTTTTTAGTCATTGCGGC 95
BSNT_05465___ 96 TGGTTCAATTGGTACCTATGCTTATATAAAGTTGAACAATGCGTCAAAAC 145
.||.||..|.||..|||||||||.|.|||||.||||||||||.||.||..
BSU35840___yw 96 AGGCTCTGTCGGCGCCTATGCTTTTGTAAAGCTGAACAATGCTTCTAAGG 145
BSNT_05465___ 146 AAGCACATATTGATCTAAAT-------GAAAATGGTCAATCCGTTAAACG 188
||||.|||.|....|| | ||.|| |||||.||.|||||
BSU35840___yw 146 AAGCTCATGTCAGCCT---TGCACGCGGAGAA----CAATCTGTAAAACG 188
BSNT_05465___ 189 TATCAAAGAATTTGATCCGAAAAAAGACTCATTTACTGTATTACTTTTAG 238
.|||||||||||||||||...||||||.||.|||.|||||||.||.||||
BSU35840___yw 189 GATCAAAGAATTTGATCCTGGAAAAGATTCTTTTTCTGTATTGCTCTTAG 238
BSNT_05465___ 239 GAATTGATTC----AAGAAATTCCAAAGGTGAGACGGTTGACGATGCTCG 284
||||||||.| .||||| ||.||.|||||.||.||..|.||..|
BSU35840___yw 239 GAATTGATGCCAGGGAGAAA----AACGGCGAGACCGTCGATCAGGCAAG 284
BSNT_05465___ 285 AAGTGACGCTAATGTCTTAGTTACCTTTAATCGAAAAAACAAATCAGCAA 334
|||||||||.|||||..|.|||||.||||||||.|||.|.|||.||||.|
BSU35840___yw 285 AAGTGACGCGAATGTGCTGGTTACATTTAATCGGAAAGAAAAAACAGCTA 334
BSNT_05465___ 335 CAATGTTAAGTATACCGAGAGATTCTTATGTTAACATCCCTGGTTATGGA 384
.||||.|.||.||.|||.|.||..|.|||||.||||||||.||..|.||.
BSU35840___yw 335 AAATGCTGAGCATTCCGCGTGACGCCTATGTAAACATCCCAGGCCACGGG 384
BSNT_05465___ 385 TATGATAAATTTACACATGCCCATGCATATGGAGGAGT----AAAACTCT 430
|||||||||||.||||||||.||.||.||.||.||.|| ..||||
BSU35840___yw 385 TATGATAAATTCACACATGCTCACGCTTACGGCGGCGTTGACTTAACT-- 432
BSNT_05465___ 431 CGGCGAAAACAATTGAAAACCTTCTAGATATTCCAGTAGATTATGTAATA 480
|.|||||||.|||||.|..|.||.|||||||||||.||||||||..||
BSU35840___yw 433 --GTGAAAACAGTTGAAGAAATGCTGGATATTCCAGTCGATTATGTCGTA 480
BSNT_05465___ 481 GAAAGTAATTTTGAC-GCTTTTAAAGATGTTGTGGATGAATTAAATGGAG 529
|||||.|| |||.|| ||||||.||||.||.||..|.||.||||||||.|
BSU35840___yw 481 GAAAGCAA-TTTCACGGCTTTTGAAGACGTCGTAAACGAGTTAAATGGCG 529
BSNT_05465___ 530 TTAGTATAAATGTAAAAAATGAAAAAATAGTTAATCAAATTAAAAAAGAT 579
|.|...|||.||||||||..||.|||.|..||.|.|||||.|||||||||
BSU35840___yw 530 TCAAAGTAACTGTAAAAAGCGATAAAGTCATTCAGCAAATCAAAAAAGAT 579
BSNT_05465___ 580 ACAAAAGGAAAAGTC--ACATTAAAAACTGGCGTTCAAACACTAAAC--- 624
||||||||.|||||| .|.|.||||| || ||||| |.||
BSU35840___yw 580 ACAAAAGGTAAAGTCGTTCTTCAAAAA--GG------AACAC-ATACGCT 620
BSNT_05465___ 625 ----GGTGAAGAAGCACTAGCTTATGTAAGGACACGTAAAGCTGATACCG 670
||.||||||||.||.|||||.|||||.|||||||||||.||.|..|
BSU35840___yw 621 TGATGGGGAAGAAGCGCTCGCTTACGTAAGAACACGTAAAGCGGACAGTG 670
BSNT_05465___ 671 A--TTTTCAACGCGGTCAAAGACAGATGGAAGTCCTAAATGCCATCATAA 718
| |||| ||||||.||||||||.||||||||.||.|..|||||.|||.
BSU35840___yw 671 ACCTTTT--ACGCGGGCAAAGACAAATGGAAGTGCTGAGCGCCATTATAG 718
BSNT_05465___ 719 AAAAATCTAAATCATTAAGCTCAATACCAGCATATGATGATATCGTTGAT 768
|.|||||.||||||||.||||||||.||.||.|||||||||||.||.|||
BSU35840___yw 719 ATAAATCAAAATCATTGAGCTCAATTCCGGCTTATGATGATATTGTGGAT 768
BSNT_05465___ 769 AGTTTAGGGGAAAATTTAAAGATGAATTTATCT-TTAAATGATGCAATCG 817
|...|.|||.||||||||||.|||||.|||||| ||||| |||||.||||
BSU35840___yw 769 ACGATGGGGCAAAATTTAAAAATGAACTTATCTCTTAAA-GATGCCATCG 817
BSNT_05465___ 818 GTTTATTTCCTTTTATAACTTCTTTAAAATCAGTTGATACTGAACAACTT 867
|..|.||.||.||.||.|||||.||.|||||||||||..||...||.||.
BSU35840___yw 818 GCCTGTTCCCGTTCATCACTTCATTGAAATCAGTTGAGTCTATTCAGCTG 867
BSNT_05465___ 868 ACCGGTTCTGA-CATGTATCTCTACAGCTCTCGTGAGCGAAAAAAACTAT 916
||.||||.||| .|||.|.|| || || ||| |.|
BSU35840___yw 868 ACGGGTTATGATTATGAACCT-----GC---CG-GAG----------TCT 898
BSNT_05465___ 917 ATTATTTGAAACTTGA--TAGTGAAAAGCTAGAAGAAGTCAAAACCGAAC 964
|||||||.||| |||| .|| .|||||||..|.|||||.||||..||.|
BSU35840___yw 899 ATTATTTCAAA-TTGAATCAG-CAAAAGCTGCAGGAAGTTAAAAAAGAGC 946
BSNT_05465___ 965 TAAAAAATGACATAG----ATAACTGA 987
|..||||.||..||| ||||
BSU35840___yw 947 TGCAAAACGATTTAGGTGTATAA---- 969
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