Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05454 and BSU35750

See Amino acid alignment / Visit BSNT_05454 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:20
# Commandline: needle
#    -asequence dna-align/BSNT_05454___tagA.1.22522.seq
#    -bsequence dna-align/BSU35750___tagA.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05454___tagA-BSU35750___tagA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05454___tagA-BSU35750___tagA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05454___tagA
# 2: BSU35750___tagA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 829
# Identity:     516/829 (62.2%)
# Similarity:   516/829 (62.2%)
# Gaps:         104/829 (12.5%)
# Score: 1396.0
# 
#
#=======================================

BSNT_05454___      1 ATGCTGCAAACGGAAACGGTTCATCATCTTGCATATGTTAACGGGGATTT     50
                        .|||||||.||.||..||||..||.||.|.|||||||||.|..|.||
BSU35750___ta      1 ---ATGCAAACAGAGACTATTCACAATATTCCTTATGTTAACAGTAACTT     47

BSNT_05454___     51 GCCCGGATTT-TTGAGTCATCTTGAAGAATCCTT-TATCGACCGCAATGA     98
                     ..|...|||| |.|| |.|.||.| ||||.|.|| |||.||.| .||.||
BSU35750___ta     48 AACATCATTTATCGA-TTACCTAG-AGAAACATTATATTGATC-AAAAGA     94

BSNT_05454___     99 -----GGGGGCATTTATCGCAACGGTAAACCCTGAGATCGGGTATGCGGC    143
                          |..|.|||||    |.||.||.||||||||.||.|..|.|||.||
BSU35750___ta     95 TTGGTGCTGTCATTT----CCACAGTCAACCCTGAAATTGCATTTGCAGC    140

BSNT_05454___    144 TGCAAAAGACAAGGGTTATTTTAAAACAGTTTCATCTGCTGACTTTATCC    193
                     |...|||||...||..||.|||.|...|.|.||.|||.|..||||.||..
BSU35750___ta    141 TATTAAAGATCGGGACTACTTTGATGTACTATCTTCTTCAAACTTCATTT    190

BSNT_05454___    194 TGCCTGACGGAATCGGCATCGTCCTGACGTCAAGGCTGATCAACAGCAGA    243
                     |||||||.||.|||||..|.|||.|||.||||.|..|||..||||.|||.
BSU35750___ta    191 TGCCTGATGGGATCGGTGTAGTCATGATGTCACGTTTGACTAACAACAGG    240

BSNT_05454___    244 TTAAAATCGAGGATCGCGGGGTACGATGTATTTATCAACCTTCTCGGCCT    293
                     .|..|.||..|.|||||.||.||||||||.||||...|.|||||.|||.|
BSU35750___ta    241 CTTCAGTCCCGAATCGCAGGTTACGATGTTTTTAAAGAACTTCTGGGCGT    290

BSNT_05454___    294 GGCTGACCGCAAAAAGAAAA---GGGTATTTTTATACGGGGCCAAACAAG    340
                     .|||.|   |||||||||||   |..|||||.|.|||||.||.||..|||
BSU35750___ta    291 TGCTAA---CAAAAAGAAAAAACGCATATTTCTGTACGGTGCGAAGAAAG    337

BSNT_05454___    341 AGATTATTCAAGCTGTTG----CAGATCGGCTTTCAACCGAATATCCCGG    386
                     |..||||..|||.|||||    ||.|    .||||..|.||||| |||..
BSU35750___ta    338 ATGTTATAAAAGGTGTTGTATCCAAA----ATTTCTTCTGAATA-CCCAA    382

BSNT_05454___    387 A-ATTGAGCTAGCCGGATACTCGCACGGCTATGTCAAAGA---CAAAGAC    432
                     | |||.|..|.||.||.||.||..||||.|||||..||||   ||   .|
BSU35750___ta    383 ACATTAAAATCGCAGGTTATTCAGACGGTTATGTTCAAGATCGCA---CC    429

BSNT_05454___    433 GAAGTTGCGAAGCAAATCGCGGCTGCCAAGCCTGACATGGTTTTTGTGGC    482
                     ..|||.||.||.|||||.||....||.||.|||||||||||.||.||.||
BSU35750___ta    430 CTAGTGGCAAAACAAATTGCAAGAGCAAATCCTGACATGGTATTCGTAGC    479

BSNT_05454___    483 TCTCGGATATCCTCATCAGGAGAAGTTTATTTATGA--ACATAAGCATCT    530
                     |.|.||.|||||||||||.|||||.||.|||.||.|  |||.|  ||..|
BSU35750___ta    480 TTTAGGGTATCCTCATCAAGAGAAATTCATTCATAACTACAGA--CACTT    527

BSNT_05454___    531 ATTTCCTCAGGCGATTGCGATCGGCATCGGCGGGAGCTTCGACGTTTTCA    580
                     .||.|||.|.||..|..|.||.||..|.||.||.|||||.||.||.||.|
BSU35750___ta    528 GTTCCCTAAAGCCGTATCTATAGGTCTAGGAGGAAGCTTTGATGTATTTA    577

BSNT_05454___    581 GCGGAAAAGTGAAAAGAGCGCCGAAAATATTCAT------TAAGCTT-AA    623
                     ||||.||.||.|||.|.||.||       |||.|      ||.|.|| ||
BSU35750___ta    578 GCGGTAATGTCAAACGGGCCCC-------TTCCTGGATGATACGTTTAAA    620

BSNT_05454___    624 TCTTGAATGGATGTACCGCCTGCTAACC---AATCCGACAAGG---TGGA    667
                     |.|.||||||.|.|||||   |.|||.|   ||||   ||.||   ||||
BSU35750___ta    621 TTTAGAATGGTTCTACCG---GTTAATCTTGAATC---CATGGCGATGGA    664

BSNT_05454___    668 AGCGGATGCTGAACATCCCGAAATATGTCTTT-TCCGTTCTGAAAGAGGA    716
                     |..|.|||||.|.||||||.||||||| |||| .|.|||.|.|||||.||
BSU35750___ta    665 AAAGAATGCTTAGCATCCCAAAATATG-CTTTAACGGTTTTAAAAGAAGA    713

BSNT_05454___    717 AAGAGTTCAAAAACAGCGGCAC-TACTATCCGGAGC-------AGATCA-    757
                     |       |||||||.....|| |.||||||..|||       |||||| 
BSU35750___ta    714 A-------AAAAACAAAAAAACTTTCTATCCAAAGCCTGAAAAAGATCAT    756

BSNT_05454___    758 --AAGAACA-ATCTAAAATCGATGTGTAG    783
                       || |||| ||.|||             
BSU35750___ta    757 ACAA-AACAGATTTAA-------------    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05454 and BSU35750

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
