Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02005 and BSU35730
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:19:23
# Commandline: needle
# -asequence dna-align/BSNT_02005.1.22522.seq
# -bsequence dna-align/BSU35730___tagE.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02005-BSU35730___tagE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02005-BSU35730___tagE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02005
# 2: BSU35730___tagE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2153
# Identity: 768/2153 (35.7%)
# Similarity: 768/2153 (35.7%)
# Gaps: 1150/2153 (53.4%)
# Score: 1355.5
#
#
#=======================================
BSNT_02005 0 -------------------------------------------------- 0
BSU35730___ta 1 TTGTCTTTACATGCGGTGAGTGAATCTAATATAAAACAAATTCCTGACAT 50
BSNT_02005 0 -------------------------------------------------- 0
BSU35730___ta 51 GGATTATTATTTTATCTCTGGTGGACTGCCAAGTAATTATGGCGGTCTGA 100
BSNT_02005 1 ----------ATGAGACTTAAGTTC---ATTGATT------ACCGTG--- 28
||.| ||..|||| ||| ||| |..|||
BSU35730___ta 101 CGAAATCATTATTA---TTGCGTTCAAAATT-ATTTGGAGAAGAGTGTAA 146
BSNT_02005 29 -------ACCTTAATCTTCAACGT---------ACTCATAGAGTTGAATA 62
|||||..|||| ||||| |.| ||||||||
BSU35730___ta 147 CCAAAACACCTTTTTCTT-AACGTTTCGTTTTGATT--TAGAGTTG---- 189
BSNT_02005 63 TGATCTT----AATGGCAGAA----AAAG--AC-GTGAGATT-ATATA-- 98
|||| |||.|..||| |.|| || ||.||||| |||.|
BSU35730___ta 190 ---TCTTCAAAAATTGATGAATTGTACAGCAACGGTAAGATTGATAAAAA 236
BSNT_02005 99 ---------------TAATCT--------------------TCAGAACAA 113
|||||| |.|||||||
BSU35730___ta 237 ATTCACAAGTGTTATTAATCTATTCGATGATTTTTTAAGTGTTAGAACAA 286
BSNT_02005 114 ------------CA--------------AGCCC----------------G 121
|| ||.|| |
BSU35730___ta 287 ATGGGAAAAGATCATACGAAGAAAGGATAGGCCTTGACCAGATAAAAAAG 336
BSNT_02005 122 C--GTTTGAA-------------AAATACT---ATGACATT--------- 144
| |||.||| |||.||| .|||.|||
BSU35730___ta 337 CAAGTTGGAATGGGGAAATTTGCAAAAACTCTGTTGAGATTGTTTGGTAA 386
BSNT_02005 145 -------AATGGAAAT---TGTTATTTATCT-----GTTTGGGTAA---- 175
||| ||||| |||..|||| || |.|.|.|.||
BSU35730___ta 387 GAAGAACAAT-GAAATGTCTGTAGTTTA-CTACGGAGATGGAGAAACTAT 434
BSNT_02005 176 -----------ACTCTT--------------CAG--------------GG 186
|||.|| ||| ||
BSU35730___ta 435 CCGGTACGTCGACTATTGGAATGATAAAAACCAGCTCATAAAGAGAGAGG 484
BSNT_02005 187 AA---ACGAA-----CAAAGTGTGTTCT------TCA------------- 209
|| ||||| .|||.|..||||| |||
BSU35730___ta 485 AATATACGAAGAACGGAAACTTAGTTCTCGTTACTCATTATGATGTGCAG 534
BSNT_02005 210 ----------------TGCTGGA----ATTAA----CAAGGCATTCAATC 235
|||.||| ||||| ||| |.||||..
BSU35730___ta 535 CTAAACAAGATGTATCTGCAGGAATATATTAATGACCAA---AATCAAGT 581
BSNT_02005 236 ATAT-------AACT-------------------------GATG------ 247
|||| |||| ||||
BSU35730___ta 582 ATATTTAGACAAACTCTATGTATGGAACAATGAAGAAAAAGATGTTCAAT 631
BSNT_02005 248 ---CACACGTCTATTGGGT-------------TGAGTCTATCCTAAAGGA 281
|.||..| ||||.||| ||||...|...||||.||
BSU35730___ta 632 TATCTCATAT-TATTTGGTACTCCCTTGAGGGTGAGATAAAAGTAAAAGA 680
BSNT_02005 282 TTACACGAATC-------CGTTTTTAATGCTGGAT-GAAT---------- 313
| ||||| || |.|||..||||| ||||
BSU35730___ta 681 T-----GAATCGGAACTGCG---TCAATATTGGATAGAATATCTGCAAAA 722
BSNT_02005 314 ----TAGGTTTA---TTAGATGTTTT--------------CCGCAAGGTA 342
.|.|.|.| |.||.|||||| |||||||
BSU35730___ta 723 ACAAAATGATAAACCTAAGTTGTTTTTAGTGGACAGCAGACCGCAAG--- 769
BSNT_02005 343 GGAAACGATTGTCACAAAATTGTAACA--------CTACATAATA----- 379
..|||| .||||...|||.||.||.| ||.|.||.||
BSU35730___ta 770 ACAAAC--ATGTCTTTAAAGTGAAAAAATCACCTTCTTCCTATTATGGAG 817
BSNT_02005 380 CACATCTTGATAA--------ACCGCA-CGTTA-----------AAGGGT 409
||..|.||.|||| ||.||| |..|| ||||||
BSU35730___ta 818 CAATTATTCATAACAAGCATTACGGCAGCAATAAATATCAAATTAAGGGT 867
BSNT_02005 410 CTCCATACAGACGCGTGTACAAAGAGATATTT-GACCACAAAGACG---- 454
|.| ||.|||||..||||| |.| |||.|
BSU35730___ta 868 CGC--------------TATAAAGAAGTATTTAGTC-----AGATGTATA 898
BSNT_02005 455 AATTCGATGCGATTGTTTTCTTAACTGAAGAGCAAAAAAGAGATGTTGAG 504
|.||.|||||..|..||||..|||||||.|||||...|..||||.||
BSU35730___ta 899 ATTTGGATGCTGTCTTTTTTATAACTGAGGAGCAGCTAGAAGATTTT--- 945
BSNT_02005 505 GAA---GATTAC---GGAACGGATGAG-CGATTTGTTGTAATTCCTCATG 547
|| ||||.| ||||| |.||| || |||.|..|.|.|||.|||.
BSU35730___ta 946 -AAATTGATTTCAGGGGAAC--AAGAGACG-TTTTTCTTTACTCCGCATA 991
BSNT_02005 548 C---TGTTA---CTCTAGATAAAGGCGCGATATTAGATAAGTCTATTGAA 591
| ||.|| ||||.||| ..|||..||||..||..|.|.|.||||
BSU35730___ta 992 CAATTGATAAGCCTCTTGAT---CCCGCTGTATTGAATGTGCCGAGTGAA 1038
BSNT_02005 592 CGAAACCCTAAATCGGCCAT------AACACTAGC-TCGCTTGGAGGA-- 632
..|.|| |||.|.|.||| ||.|||.|| | ||..||..|
BSU35730___ta 1039 AAATAC---AAAGCTGTCATTATTTCAAGACTTGCAT--CTATGAAAAAT 1083
BSNT_02005 633 ----------CAGTAAAAATATTGCGGACGGAATTCGTGCTTTCCGTATT 672
|||||||| ||.||..||.|.
BSU35730___ta 1084 CTGATACATGCAGTAAAA--------------------GCATTTAGTTTA 1113
BSNT_02005 673 GTGGTCGACGAAATTAAAGACGCCGAGTATCATATCTTTGGTTATGGAAA 722
||.||..|.||||||...||.||..|...|.||||.||.||.|..||..|
BSU35730___ta 1114 GTCGTGAAAGAAATTCCTGAAGCAAAACTTGATATATTCGGATCGGGTGA 1163
BSNT_02005 723 AGA----GAAGGAAAATTTACAAGCGTTGATAAAG--------GAT---- 756
||| ||| ||||| || |.|||| |||
BSU35730___ta 1164 AGATTTCGAA--AAAAT----AA------AAAAAGAAATTGAAGATACCA 1201
BSNT_02005 757 --CTGCA-----------TTTAGAAAATAACGTTCATATACATGGGTTTA 793
||||| |||.|||| ||.|.||
BSU35730___ta 1202 AACTGCAGAACAATGTCTTTTTGAAA-----------------GGCTATA 1234
BSNT_02005 794 CTCATAACGTTAATAGAGAAATTCAAAAACACGGGCTGTCTATTATGACA 843
|..|||||..|.|...|||..||||||||....||||..|.|||...||.
BSU35730___ta 1235 CGGATAACCCTGACTCAGAGTTTCAAAAAGCTTGGCTAACCATTTCAACC 1284
BSNT_02005 844 TCTCGATTCGAAGGATTCTGCTTAGTAATTATGGAAAGTCT-AGCCAAT- 891
||||..||.|||||.|||.|..||..||.||||||....|| || ||||
BSU35730___ta 1285 TCTCATTTTGAAGGGTTCGGTCTATCAAATATGGAGGCACTGAG-CAATG 1333
BSNT_02005 892 ------CA-----AACGCCCG--TAGTGAGTTACAGAACGA-------AG 921
|| |||...|| || ||| ||||.||.|.| ||
BSU35730___ta 1334 GATGTCCAGTTGTAACATACGATTA-TGA-TTACGGAGCAAGGAGCTTAG 1381
BSNT_02005 922 T-----ACGGTCC----GGA----------AACACTCAT----TAGAGA- 947
| ||||..| ||| ||||.| || ||||||
BSU35730___ta 1382 TTACTGACGGAGCAAATGGATATGTCATTGAACAGT-ATAATATAGAGAA 1430
BSNT_02005 948 --TGG----------------------GAAAGATG--GGTACTTAGT--- 968
||| |||||||| .|||||.| |
BSU35730___ta 1431 ATTGGGTCAAGCTATTATCTCTTTGATGAAAGATGAAAGTACTCA-TCAA 1479
BSNT_02005 969 --------AGAA--------TATAAT-------AACTA-TGAAGA---AG 991
|||| ||.||| ||.|| |.|||| |.
BSU35730___ta 1480 AAATTTTCAGAACAAGCTTTTAAAATGGCTGAAAAATATTCAAGACCCAA 1529
BSNT_02005 992 CTGCA--GAAAA--------------------AG-TGAT-------CGAA 1011
||..| ||||| || |||| ||||
BSU35730___ta 1530 CTATATTGAAAATTGGGCTTTTGCTCTTAATCAGATGATTGAGGTGCGAA 1579
BSNT_02005 1012 TTAATGAAAGACAGTAAG----CTGCAGAAAAAGTTTGCCAAAAA----- 1052
| .||||||.|| ||| || ||||||.|||..|||||
BSU35730___ta 1580 T---AGAAAGAGAG-AAGTTCTCT----AAAAAGGTTGGAAAAAAAGATC 1621
BSNT_02005 1053 -TTC-GTTAGAT-GTATACAAACGATTT---------------------- 1077
||| .||||.| .|||||..|.|||||
BSU35730___ta 1622 CTTCTATTAGTTCCTATACTGAGGATTTTGATAAAACTAAAATAGAAATT 1671
BSNT_02005 1078 ---------AGTTATGCTC-----GCTAT--------------------- 1092
|.||.||.|| |.|||
BSU35730___ta 1672 GACATTGAGAATTTTGATCATAATGATATTAAAAAAATACGTTTAGTGGG 1721
BSNT_02005 1093 ----------AAGAAGAACTGGCTCGACTTATTTAAAC-AGCTTTCGAAA 1131
|||||.|| ||||..|.||||||.||| |.|||.|.|||
BSU35730___ta 1722 CTTGGACAGAAAGAATAA--GGCTGAAATTATTTCAACAAACTTACAAAA 1769
BSNT_02005 1132 TAA----------------------------------------------- 1134
|.|
BSU35730___ta 1770 TGATCAACTGTTTGTAATTGATCTCGAAAAAGATGTAAATATTGAAAAGA 1819
BSNT_02005 1134 -------------------------------------------------- 1134
BSU35730___ta 1820 TAGCTGCTAATAAAACCCAAGTTATTGATTTTTATATTGTTTTCAATGCA 1869
BSNT_02005 1134 -------------------------------------------------- 1134
BSU35730___ta 1870 AATGGCCATATTAAAACAATGCGAAGACTTTCGAGTGAAGAAACAAAATT 1919
BSNT_02005 1134 -------------------------------------------------- 1134
BSU35730___ta 1920 GTCAGGAAACAGTATAGATACTAATAATGGCTATAGAGTAGAGCCCTATA 1969
BSNT_02005 1134 -------------------------------------------------- 1134
BSU35730___ta 1970 CAACAGTTAAAGGCAATTTCTCTTGGAGGGTCACGGAAATAAAAGAGAGT 2019
BSNT_02005 1134 --- 1134
BSU35730___ta 2020 TAA 2022
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