Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02005 and BSU35730

See Amino acid alignment / Visit BSNT_02005 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:19:23
# Commandline: needle
#    -asequence dna-align/BSNT_02005.1.22522.seq
#    -bsequence dna-align/BSU35730___tagE.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02005-BSU35730___tagE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02005-BSU35730___tagE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02005
# 2: BSU35730___tagE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2153
# Identity:     768/2153 (35.7%)
# Similarity:   768/2153 (35.7%)
# Gaps:        1150/2153 (53.4%)
# Score: 1355.5
# 
#
#=======================================

BSNT_02005         0 --------------------------------------------------      0
                                                                       
BSU35730___ta      1 TTGTCTTTACATGCGGTGAGTGAATCTAATATAAAACAAATTCCTGACAT     50

BSNT_02005         0 --------------------------------------------------      0
                                                                       
BSU35730___ta     51 GGATTATTATTTTATCTCTGGTGGACTGCCAAGTAATTATGGCGGTCTGA    100

BSNT_02005         1 ----------ATGAGACTTAAGTTC---ATTGATT------ACCGTG---     28
                               ||.|   ||..||||   ||| |||      |..|||   
BSU35730___ta    101 CGAAATCATTATTA---TTGCGTTCAAAATT-ATTTGGAGAAGAGTGTAA    146

BSNT_02005        29 -------ACCTTAATCTTCAACGT---------ACTCATAGAGTTGAATA     62
                            |||||..|||| |||||         |.|  ||||||||    
BSU35730___ta    147 CCAAAACACCTTTTTCTT-AACGTTTCGTTTTGATT--TAGAGTTG----    189

BSNT_02005        63 TGATCTT----AATGGCAGAA----AAAG--AC-GTGAGATT-ATATA--     98
                        ||||    |||.|..|||    |.||  || ||.||||| |||.|  
BSU35730___ta    190 ---TCTTCAAAAATTGATGAATTGTACAGCAACGGTAAGATTGATAAAAA    236

BSNT_02005        99 ---------------TAATCT--------------------TCAGAACAA    113
                                    ||||||                    |.|||||||
BSU35730___ta    237 ATTCACAAGTGTTATTAATCTATTCGATGATTTTTTAAGTGTTAGAACAA    286

BSNT_02005       114 ------------CA--------------AGCCC----------------G    121
                                 ||              ||.||                |
BSU35730___ta    287 ATGGGAAAAGATCATACGAAGAAAGGATAGGCCTTGACCAGATAAAAAAG    336

BSNT_02005       122 C--GTTTGAA-------------AAATACT---ATGACATT---------    144
                     |  |||.|||             |||.|||   .|||.|||         
BSU35730___ta    337 CAAGTTGGAATGGGGAAATTTGCAAAAACTCTGTTGAGATTGTTTGGTAA    386

BSNT_02005       145 -------AATGGAAAT---TGTTATTTATCT-----GTTTGGGTAA----    175
                            ||| |||||   |||..|||| ||     |.|.|.|.||    
BSU35730___ta    387 GAAGAACAAT-GAAATGTCTGTAGTTTA-CTACGGAGATGGAGAAACTAT    434

BSNT_02005       176 -----------ACTCTT--------------CAG--------------GG    186
                                |||.||              |||              ||
BSU35730___ta    435 CCGGTACGTCGACTATTGGAATGATAAAAACCAGCTCATAAAGAGAGAGG    484

BSNT_02005       187 AA---ACGAA-----CAAAGTGTGTTCT------TCA-------------    209
                     ||   |||||     .|||.|..|||||      |||             
BSU35730___ta    485 AATATACGAAGAACGGAAACTTAGTTCTCGTTACTCATTATGATGTGCAG    534

BSNT_02005       210 ----------------TGCTGGA----ATTAA----CAAGGCATTCAATC    235
                                     |||.|||    |||||    |||   |.||||..
BSU35730___ta    535 CTAAACAAGATGTATCTGCAGGAATATATTAATGACCAA---AATCAAGT    581

BSNT_02005       236 ATAT-------AACT-------------------------GATG------    247
                     ||||       ||||                         ||||      
BSU35730___ta    582 ATATTTAGACAAACTCTATGTATGGAACAATGAAGAAAAAGATGTTCAAT    631

BSNT_02005       248 ---CACACGTCTATTGGGT-------------TGAGTCTATCCTAAAGGA    281
                        |.||..| ||||.|||             ||||...|...||||.||
BSU35730___ta    632 TATCTCATAT-TATTTGGTACTCCCTTGAGGGTGAGATAAAAGTAAAAGA    680

BSNT_02005       282 TTACACGAATC-------CGTTTTTAATGCTGGAT-GAAT----------    313
                     |     |||||       ||   |.|||..||||| ||||          
BSU35730___ta    681 T-----GAATCGGAACTGCG---TCAATATTGGATAGAATATCTGCAAAA    722

BSNT_02005       314 ----TAGGTTTA---TTAGATGTTTT--------------CCGCAAGGTA    342
                         .|.|.|.|   |.||.||||||              |||||||   
BSU35730___ta    723 ACAAAATGATAAACCTAAGTTGTTTTTAGTGGACAGCAGACCGCAAG---    769

BSNT_02005       343 GGAAACGATTGTCACAAAATTGTAACA--------CTACATAATA-----    379
                     ..||||  .||||...|||.||.||.|        ||.|.||.||     
BSU35730___ta    770 ACAAAC--ATGTCTTTAAAGTGAAAAAATCACCTTCTTCCTATTATGGAG    817

BSNT_02005       380 CACATCTTGATAA--------ACCGCA-CGTTA-----------AAGGGT    409
                     ||..|.||.||||        ||.||| |..||           ||||||
BSU35730___ta    818 CAATTATTCATAACAAGCATTACGGCAGCAATAAATATCAAATTAAGGGT    867

BSNT_02005       410 CTCCATACAGACGCGTGTACAAAGAGATATTT-GACCACAAAGACG----    454
                     |.|              ||.|||||..||||| |.|     |||.|    
BSU35730___ta    868 CGC--------------TATAAAGAAGTATTTAGTC-----AGATGTATA    898

BSNT_02005       455 AATTCGATGCGATTGTTTTCTTAACTGAAGAGCAAAAAAGAGATGTTGAG    504
                     |.||.|||||..|..||||..|||||||.|||||...|..||||.||   
BSU35730___ta    899 ATTTGGATGCTGTCTTTTTTATAACTGAGGAGCAGCTAGAAGATTTT---    945

BSNT_02005       505 GAA---GATTAC---GGAACGGATGAG-CGATTTGTTGTAATTCCTCATG    547
                      ||   ||||.|   |||||  |.||| || |||.|..|.|.|||.|||.
BSU35730___ta    946 -AAATTGATTTCAGGGGAAC--AAGAGACG-TTTTTCTTTACTCCGCATA    991

BSNT_02005       548 C---TGTTA---CTCTAGATAAAGGCGCGATATTAGATAAGTCTATTGAA    591
                     |   ||.||   ||||.|||   ..|||..||||..||..|.|.|.||||
BSU35730___ta    992 CAATTGATAAGCCTCTTGAT---CCCGCTGTATTGAATGTGCCGAGTGAA   1038

BSNT_02005       592 CGAAACCCTAAATCGGCCAT------AACACTAGC-TCGCTTGGAGGA--    632
                     ..|.||   |||.|.|.|||      ||.|||.|| |  ||..||..|  
BSU35730___ta   1039 AAATAC---AAAGCTGTCATTATTTCAAGACTTGCAT--CTATGAAAAAT   1083

BSNT_02005       633 ----------CAGTAAAAATATTGCGGACGGAATTCGTGCTTTCCGTATT    672
                               ||||||||                    ||.||..||.|.
BSU35730___ta   1084 CTGATACATGCAGTAAAA--------------------GCATTTAGTTTA   1113

BSNT_02005       673 GTGGTCGACGAAATTAAAGACGCCGAGTATCATATCTTTGGTTATGGAAA    722
                     ||.||..|.||||||...||.||..|...|.||||.||.||.|..||..|
BSU35730___ta   1114 GTCGTGAAAGAAATTCCTGAAGCAAAACTTGATATATTCGGATCGGGTGA   1163

BSNT_02005       723 AGA----GAAGGAAAATTTACAAGCGTTGATAAAG--------GAT----    756
                     |||    |||  |||||    ||      |.||||        |||    
BSU35730___ta   1164 AGATTTCGAA--AAAAT----AA------AAAAAGAAATTGAAGATACCA   1201

BSNT_02005       757 --CTGCA-----------TTTAGAAAATAACGTTCATATACATGGGTTTA    793
                       |||||           |||.||||                 ||.|.||
BSU35730___ta   1202 AACTGCAGAACAATGTCTTTTTGAAA-----------------GGCTATA   1234

BSNT_02005       794 CTCATAACGTTAATAGAGAAATTCAAAAACACGGGCTGTCTATTATGACA    843
                     |..|||||..|.|...|||..||||||||....||||..|.|||...||.
BSU35730___ta   1235 CGGATAACCCTGACTCAGAGTTTCAAAAAGCTTGGCTAACCATTTCAACC   1284

BSNT_02005       844 TCTCGATTCGAAGGATTCTGCTTAGTAATTATGGAAAGTCT-AGCCAAT-    891
                     ||||..||.|||||.|||.|..||..||.||||||....|| || |||| 
BSU35730___ta   1285 TCTCATTTTGAAGGGTTCGGTCTATCAAATATGGAGGCACTGAG-CAATG   1333

BSNT_02005       892 ------CA-----AACGCCCG--TAGTGAGTTACAGAACGA-------AG    921
                           ||     |||...||  || ||| ||||.||.|.|       ||
BSU35730___ta   1334 GATGTCCAGTTGTAACATACGATTA-TGA-TTACGGAGCAAGGAGCTTAG   1381

BSNT_02005       922 T-----ACGGTCC----GGA----------AACACTCAT----TAGAGA-    947
                     |     ||||..|    |||          ||||.| ||    |||||| 
BSU35730___ta   1382 TTACTGACGGAGCAAATGGATATGTCATTGAACAGT-ATAATATAGAGAA   1430

BSNT_02005       948 --TGG----------------------GAAAGATG--GGTACTTAGT---    968
                       |||                      ||||||||  .|||||.| |   
BSU35730___ta   1431 ATTGGGTCAAGCTATTATCTCTTTGATGAAAGATGAAAGTACTCA-TCAA   1479

BSNT_02005       969 --------AGAA--------TATAAT-------AACTA-TGAAGA---AG    991
                             ||||        ||.|||       ||.|| |.||||   |.
BSU35730___ta   1480 AAATTTTCAGAACAAGCTTTTAAAATGGCTGAAAAATATTCAAGACCCAA   1529

BSNT_02005       992 CTGCA--GAAAA--------------------AG-TGAT-------CGAA   1011
                     ||..|  |||||                    || ||||       ||||
BSU35730___ta   1530 CTATATTGAAAATTGGGCTTTTGCTCTTAATCAGATGATTGAGGTGCGAA   1579

BSNT_02005      1012 TTAATGAAAGACAGTAAG----CTGCAGAAAAAGTTTGCCAAAAA-----   1052
                     |   .||||||.|| |||    ||    ||||||.|||..|||||     
BSU35730___ta   1580 T---AGAAAGAGAG-AAGTTCTCT----AAAAAGGTTGGAAAAAAAGATC   1621

BSNT_02005      1053 -TTC-GTTAGAT-GTATACAAACGATTT----------------------   1077
                      ||| .||||.| .|||||..|.|||||                      
BSU35730___ta   1622 CTTCTATTAGTTCCTATACTGAGGATTTTGATAAAACTAAAATAGAAATT   1671

BSNT_02005      1078 ---------AGTTATGCTC-----GCTAT---------------------   1092
                              |.||.||.||     |.|||                     
BSU35730___ta   1672 GACATTGAGAATTTTGATCATAATGATATTAAAAAAATACGTTTAGTGGG   1721

BSNT_02005      1093 ----------AAGAAGAACTGGCTCGACTTATTTAAAC-AGCTTTCGAAA   1131
                               |||||.||  ||||..|.||||||.||| |.|||.|.|||
BSU35730___ta   1722 CTTGGACAGAAAGAATAA--GGCTGAAATTATTTCAACAAACTTACAAAA   1769

BSNT_02005      1132 TAA-----------------------------------------------   1134
                     |.|                                               
BSU35730___ta   1770 TGATCAACTGTTTGTAATTGATCTCGAAAAAGATGTAAATATTGAAAAGA   1819

BSNT_02005      1134 --------------------------------------------------   1134
                                                                       
BSU35730___ta   1820 TAGCTGCTAATAAAACCCAAGTTATTGATTTTTATATTGTTTTCAATGCA   1869

BSNT_02005      1134 --------------------------------------------------   1134
                                                                       
BSU35730___ta   1870 AATGGCCATATTAAAACAATGCGAAGACTTTCGAGTGAAGAAACAAAATT   1919

BSNT_02005      1134 --------------------------------------------------   1134
                                                                       
BSU35730___ta   1920 GTCAGGAAACAGTATAGATACTAATAATGGCTATAGAGTAGAGCCCTATA   1969

BSNT_02005      1134 --------------------------------------------------   1134
                                                                       
BSU35730___ta   1970 CAACAGTTAAAGGCAATTTCTCTTGGAGGGTCACGGAAATAAAAGAGAGT   2019

BSNT_02005      1134 ---   1134
                        
BSU35730___ta   2020 TAA   2022


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