Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05428 and BSU35630
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:18
# Commandline: needle
# -asequence dna-align/BSNT_05428___lytB.1.22522.seq
# -bsequence dna-align/BSU35630___lytB.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05428___lytB-BSU35630___lytB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05428___lytB-BSU35630___lytB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05428___lytB
# 2: BSU35630___lytB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2375
# Identity: 1378/2375 (58.0%)
# Similarity: 1378/2375 (58.0%)
# Gaps: 487/2375 (20.5%)
# Score: 3295.5
#
#
#=======================================
BSNT_05428___ 1 TTGAA-------AAAGA--TGA-AGCTTCTGGTTCTGTCGTCAGTAACTG 40
||||| |||.| ||| || |||..|||.| ||
BSU35630___ly 1 TTGAAATCTTGCAAACAATTGATAG----------TGTGTTCACT---TG 37
BSNT_05428___ 41 CTGCAGCTCTGA-TGTTTACGCAATCTGCCCAG--------GCTGCCGAC 81
||||| .|||.| |.||.|..|.|| ||| ||.||.|||
BSU35630___ly 38 CTGCA-ATCTTATTATTGATTCCAT-----CAGTTTCTTTTGCAGCAGAC 81
BSNT_05428___ 82 -AAAACAATTTCGGTAAA---GTTAAGTAATTATTTGGGCAATAAATCAA 127
.|||| ||.||.||.|| |||| ||||||.|.||.||||||||.|
BSU35630___ly 82 TCAAAC-ATCTCAGTTAAATTGTTA---AATTATATTGGAAATAAATCTA 127
BSNT_05428___ 128 G----TGTTGATATCGACATTACCGGCTTATACGAAATTCCGGGCTCAG- 172
| .|| .|||||.|| ||.||.||.||..||.|..|.|| ||
BSU35630___ly 128 GCATCAGT--CTATCGCCA--ACAGGATTTTATAAAGTAACTGG---AGA 170
BSNT_05428___ 173 GAATCT--CCGCGACAGAGCGGTACGGCGGGGCGACCCGCTT--TGATGT 218
.|||.| |.|..||.||.||.|..|..|| ||||| .|||..
BSU35630___ly 171 TAATGTTGCTGTTACGGATCGTTTTGCAGG-------CGCTTCACGATAC 213
BSNT_05428___ 219 GGCAAAC----AATGTCGCAT----CTGCCGGATGGACGAACCCGAGCAC 260
| |||| |.|.|.|||| |.|||.| ||||..||.||.|..||
BSU35630___ly 214 G--AAACTGCGACTCTTGCATCCAACAGCCAG-TGGAAAAATCCTAATAC 260
BSNT_05428___ 261 AGTCGTGATT-GTCAACCGAGACGCTTTTGCGGACGCGCTCTCTGCAACT 309
||| |..||| ||.||||||||...||||...||.||..|..|||..|.|
BSU35630___ly 261 AGT-GATATTGGTGAACCGAGATATTTTTATTGATGCATTGCCTGTTATT 309
BSNT_05428___ 310 CCGCTTGCAAAGAA---GTACGATGCGCCGATTCTTTTAACAGATGCGGG 356
||..|.||.||.|| |.|| ||.||..||.|.||.||..| ||..|
BSU35630___ly 310 CCATTGGCGAAAAAACTGAAC---GCACCAGTTTTATTTACTCA-GCCTG 355
BSNT_05428___ 357 A-ACGCTGACGGCGAAA----ACCGAAACTCAAATTGCCAAGATGAAGCC 401
| |||.|.|| ||| ||.||||..||||||||.|||.|.||.||
BSU35630___ly 356 ACACGTTAAC----AAAAACTACTGAAAGACAAATTGCTAAGTTTAACCC 401
BSNT_05428___ 402 AGATAACATCTTAATTATCGGTGGAACAACG-AGCGTTTCCAAAAATGTT 450
.|||||.||.|||||.||.||.|||.| .|| |||.||||.|||.|.||.
BSU35630___ly 402 TGATAATATTTTAATCATTGGGGGAGC-GCGAAGCATTTCAAAAGACGTA 450
BSNT_05428___ 451 GAAAACACGCTGAAAAAGTATGGGGCAATTGT---CCGTATCGGCGGCGC 497
|||||||.|||||||...|||||.|| ||| ..|.||..||||...
BSU35630___ly 451 GAAAACAAGCTGAAATCATATGGCGC---TGTGAAAAGGATAAGCGGAAA 497
BSNT_05428___ 498 CAATCGATATGATGTGTCTAAAAATATTGCGAGCCGGATGGGGTCCTACA 547
.|||.||||||...|.||..||||||||||.|..|..||||| ||
BSU35630___ly 498 AAATAGATATGTCTTATCAGAAAATATTGCAAAGCAAATGGG------CA 541
BSNT_05428___ 548 GC------CAGGCGATTGTTGCCACCGGTTTGGTCTTCTC-CGACGCTCT 590
|| .|.|||||.||||..|||||....||.|| || .||||||.|
BSU35630___ly 542 GCTATGATAAAGCGATCGTTGTAACCGGAAGAGTATT-TCAAGACGCTTT 590
BSNT_05428___ 591 GTCGATCGCGCCTTATGCGGCAATGAACGGTTATCCGATACTGCTCTCAG 640
..|.||.||.||.|||||.|||....||||.||.||.||..||||..|||
BSU35630___ly 591 AGCCATTGCTCCATATGCAGCAGCACACGGATACCCTATTTTGCTTACAG 640
BSNT_05428___ 641 GGAATAATACGA---TCCGAAGCGATTACAATATTCCGAGCAAAGTTACA 687
.|| ||.||.| |||| |||||..||.|.| |||| |||
BSU35630___ly 641 AGA--AAGACAAGCTTCCG----GATTATGATTTGC----CAAA---ACA 677
BSNT_05428___ 688 A-TCGTC------GGCGGTCCGTTGAGTGTCAGCACAAGTGTTGAAAA-C 729
| ||.|| |||.||.|.||.||.|||||....|||||.||||| |
BSU35630___ly 678 AGTCATCATTATAGGCAGTTCATTTAGCGTCAGTGATAGTGTAGAAAACC 727
BSNT_05428___ 730 ACATTAAAGAAA------------AAAGCGGCTGTTACCCGCATCGGCGG 767
|.||||||.||| |||| |.|.||.|.|||
BSU35630___ly 728 AAATTAAAAAAACTTCAACTGTGCAAAG-----GATTCCTGGATC----- 767
BSNT_05428___ 768 TGCGAA-CAGATATGAAGTGTCTGCGAATATTGTTAACGC-GCTTAACAT 815
|| ||||||||||.|..|.||.|||||..|||| || .||.||..|
BSU35630___ly 768 ----AACCAGATATGAACTTACGGCAAATATAATTAA-GCAACTAAAGTT 812
BSNT_05428___ 816 GAACGC--ATCAAAGGTTTTCATGTCTAACGGAATGACTTTTGCAGATGC 863
|||.|| || ||.||..|.|||.|.|||||.|..|..|.||||||.|.
BSU35630___ly 813 GAAGGCTGAT--AAAGTCGTAATGACGAACGGGACAAAATATGCAGACGT 860
BSNT_05428___ 864 ACTG---GCCGGTTCCGTCCTTGCAGC-CAAACAAAAGCATCC---TTTG 906
|.|| |.||.||| .||||| | |.||.||||.||.|| |||
BSU35630___ly 861 ATTGATAGGCGCTTC---GCTTGC--CTCGAAGAAAAACAGCCAAATTT- 904
BSNT_05428___ 907 CTACTTGTCCAA-----------TCGGGCAGTTTGCCGCCTCCTGTCGCA 945
||.||||..|| ||.||| |||.|| .|
BSU35630___ly 905 -TATTTGTTAAACAAGATAGCGTTCCGGC----TGCGGC---------TA 940
BSNT_05428___ 946 GATGTAGTCGCCAAA---AAAGGAACACAGTCTTTTG-CTTTGCTTGGAG 991
.|.||| |..|.||| ||||..|||.|..|.|..| |||| .|||||.
BSU35630___ly 941 AAAGTA-TAACGAAAGATAAAGCCACATATGCATACGACTTT-ATTGGAA 988
BSNT_05428___ 992 GGACCGCCTCGATCACGGATTC-------GTTGA-AAAACAGCCTGGCAG 1033
|.|||...||.|| ||| ||||| ||..|| ||.||.|
BSU35630___ly 989 GTACCAGTTCAAT------TTCTGCTGAAGTTGAGAATTCA--CTTGCTG 1030
BSNT_05428___ 1034 ATATGA-------TTACCGGGAACGGATACTCTGTTAATCTATCGGGCGG 1076
|||| |||.|.| ||||...|.|...|||||||
BSU35630___ly 1031 --ATGAATTTTATTTAGCTG--ACGGTGGCACCTATAATCTA-------- 1068
BSNT_05428___ 1077 AAAGCTTGTGCTCAACA----AAAATAATAAAGCT-------GTCAAAAC 1115
||| .|||||| ||||| ||||.|| .|||||||
BSU35630___ly 1069 AAA-------ATCAACAGCGGAAAAT--TAAACCTTGAAAACATCAAAAC 1109
BSNT_05428___ 1116 GTTT---GAAACTTC------ATTTACGGCATCACCTAAAAAATATTCGA 1156
|| ||||||.| |||.| |||..||||.|||||.|
BSU35630___ly 1110 --TTACGGAAACTCCCTAAGAATTAA-------ACCAGAAAACTATTCTA 1150
BSNT_05428___ 1157 CTTCAAATTCCATCAGCATCA------ACGGAAGGCCTTATTTAGGCAAT 1200
||||||| |||.||.| |.||||.||..|||.|.||||..
BSU35630___ly 1151 CTTCAAA------CAGAATTAGTCTTGATGGAAAGCAGTATCTTGGCACG 1194
BSNT_05428___ 1201 ATGAAGTTTACGATTGAATCAAGCAAATATATTCGACCGATAAACGAAAA 1250
.|.||.||..|.|||||.||.|..||||||||.||||||.||||.||.||
BSU35630___ly 1195 GTTAATTTCTCTATTGAGTCTACTAAATATATCCGACCGGTAAATGAGAA 1244
BSNT_05428___ 1251 CATTCCGTTTGAAGATTATCTAAAAGGTGTTGTGCCGCACGAAATGCCGG 1300
.|||||.|||||.|||||..|||||||.||..|.|||.|.||||||||.|
BSU35630___ly 1245 TATTCCATTTGAGGATTACTTAAAAGGAGTAATTCCGAATGAAATGCCTG 1294
BSNT_05428___ 1301 CAAGTTGG-CAGAC-TGAAGCTTTAAAAGCCCAAGCGGTGGCAGCGAGAA 1348
|.||.||| | || |||.|||.|.|||||.||..|.||.||.||.||||
BSU35630___ly 1295 CTAGCTGGTC--ACTTGAGGCTCTTAAAGCACAGACTGTCGCTGCAAGAA 1342
BSNT_05428___ 1349 CATATTCGGTCGGTTCCG--------CAGGAAAAGTA--GTGGCTGATAC 1388
|.||.||..| |||| ||.|| ||..||||||
BSU35630___ly 1343 CCTACTCAAT--------AACAAAAACAGG--AACTACTGTACCTGATA- 1381
BSNT_05428___ 1389 GCAATCG--TTTCAGGTTTACGGCGGATATGACTGGAATTCGAAGAC--A 1434
|||.|| |||||.|||||.||.||.||....|||||||||||.|| |
BSU35630___ly 1382 -CAACCGCTTTTCAAGTTTATGGTGGCTACAGTTGGAATTCGAATACCAA 1430
BSNT_05428___ 1435 TCCAGCGTTGTA----AATTCCACAAAAGGACAAGTTTTAAAATATAACG 1480
|..|||| ||| || ||.||.||..|||||.|.||||||||.|
BSU35630___ly 1431 TAAAGCG--GTAGAGCAA----ACGAAGGGGAAAGTTCTGAAATATAATG 1474
BSNT_05428___ 1481 GCAATTTGATTTCGGCCGTTTACTCATCAAGCAACGGGGGATATACGGAA 1530
|...|.|.||..|.||.|.|||.||.||.||.||.||.||.||.||.|||
BSU35630___ly 1475 GATCTCTTATAACTGCAGCTTATTCTTCCAGTAATGGTGGTTACACAGAA 1524
BSNT_05428___ 1531 GCAAGCGCAGAGGTATGGGGCGGCAA-TGTTCCATATTTAATCGCCAAAG 1579
||.||....||.||.| ||.||.||| |||.||.||.||.||.||.|||.
BSU35630___ly 1525 GCTAGTAATGAAGTGT-GGTCGTCAAGTGTACCTTACTTGATTGCAAAAA 1573
BSNT_05428___ 1580 CGGATACATATGACCCGAAAACCAGCTGGTCGATATCTTTGAAT-AAAAC 1628
..||||||.|.||.||..|||...|||||.||.|..||||| | ||||
BSU35630___ly 1574 AAGATACAAAGGATCCTCAAATAGGCTGGACGCTTACTTTG--TCAAAA- 1620
BSNT_05428___ 1629 GCAGATCAACA-CCAG---CGGCTTAAATCT---GA------GCAGCC-- 1663
||||| |.|| || |||||| || |.||||
BSU35630___ly 1621 ------CAACAGCTAGATACG----AAATCTTTGGACTTAACGAAGCCTT 1660
BSNT_05428___ 1664 CTAGCACTTGGTGGAATTCGACTAATGAAACGAACTCCGC----CTATTT 1709
|| .||||||||..|||..|.|.||||||..|.||.|| | |
BSU35630___ly 1661 CT---TCTTGGTGGTCTTCAGCGACTGAAACTGATTCTGCAAGAC----T 1703
BSNT_05428___ 1710 ATCGGGACTGAAAAGCTGGTTTATGACCAATAAATATCCTAGTGCGGAAT 1759
.||.|||.|.||.|.||||.|..|||..||||||.|..|.||.||.||.|
BSU35630___ly 1704 TTCCGGAGTTAAGAACTGGATCTTGAAAAATAAAGAAACAAGCGCTGATT 1753
BSNT_05428___ 1760 CTATTAAGATCACGAAAATCTCAAGCCTGAGCCTG--------AGC---A 1798
||.| .|||||..||||..| || ||| |
BSU35630___ly 1754 CTGT---------CAAAATTGCAAGTAT-----TGACGATTTAAGCTTTA 1789
BSNT_05428___ 1799 GTGCAAAAACTGCCGGTCAGCGGCCGAAAACAGCA------GAGGTGAAG 1842
|||.||..||....||.|||||..|.||||||||| .|.||||||
BSU35630___ly 1790 GTGGAACGACACAAGGGCAGCGTGCAAAAACAGCATCGATGAAAGTGAAG 1839
BSNT_05428___ 1843 TTTTCTTACTTTGTCAAAGAAAAATCA--AATGGCTATGTTCTGTCAAAC 1890
||.||||| .||||.|| |.||||| |
BSU35630___ly 1840 ------TATTTTGT-----TAAAAGCAGTACTGGCT-------------C 1865
BSNT_05428___ 1891 GGAAAACTTTCAGAAAAA--ACAGCGACGATTTCCGTGACGACGACTCAA 1938
..|.||| ||.||.|||| ||| ||.|||...||..|.||.|.|.|.
BSU35630___ly 1866 CTATAAC-TTGAGCAAAATTACA---ACCATTAGTGTACCAACAAGTGAG 1911
BSNT_05428___ 1939 TTAAGATCGATG-TTGG-GCGGCATGAATATGAAGAGCACGTATGCTTCT 1986
||||||.|.||| |||| |||.| ||.|| |.||.||.||.||||...||
BSU35630___ly 1912 TTAAGAACAATGATTGGAGCGAC-TGTAT-TTAAAAGTACTTATGTGACT 1959
BSNT_05428___ 1987 TTATCAAACAATACGAACGCTTTTATTC-----------TCAGCGGTAAA 2025
.||..|||..|||| ||| |||||||||||
BSU35630___ly 1960 GTAAAAAAAGATAC-----------TTCAAAGTACACAATCAGCGGTAAA 1998
BSNT_05428___ 2026 GGATTCGGCCACGGAATCGGCATGAGTCAGTATGGAGCAAATGCCAGAGC 2075
||||..||.|||||.|||||.||||||||.|||||||||||.||.|||||
BSU35630___ly 1999 GGATATGGTCACGGGATCGGAATGAGTCAATATGGAGCAAAAGCAAGAGC 2048
BSNT_05428___ 2076 TGCTGCCGGGCACGATTACAAGAAG----ATTTT-AAGTTTCTATTATCC 2120
.|..||.|| .|||| ||...|| ||||| ||.||| ||.|||||
BSU35630___ly 2049 AGAAGCTGG---AGATT-CATATAGTTCAATTTTGAAATTT-TACTATCC 2093
BSNT_05428___ 2121 AAATACGACTCTATCAAGCTATTAA 2145
|..|||.|||||..||||.||||.|
BSU35630___ly 2094 AGGTACAACTCTGACAAGTTATTGA 2118
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