Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05418 and BSU35580

See Amino acid alignment / Visit BSNT_05418 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:16
# Commandline: needle
#    -asequence dna-align/BSNT_05418___tuaD.1.22522.seq
#    -bsequence dna-align/BSU35580___tuaD.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05418___tuaD-BSU35580___tuaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05418___tuaD-BSU35580___tuaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05418___tuaD
# 2: BSU35580___tuaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1433
# Identity:     961/1433 (67.1%)
# Similarity:   961/1433 (67.1%)
# Gaps:         145/1433 (10.1%)
# Score: 2998.5
# 
#
#=======================================

BSNT_05418___      1 ATGTTGAAAAGAATTGCTGTCATTGGGACGGGATATGTCGGGCTGGTGTC     50
                        .||||||.|||.|||||||||||.||.||.|||||.||.||.||.||
BSU35580___tu      1 ---GTGAAAAAAATAGCTGTCATTGGAACAGGTTATGTAGGACTCGTATC     47

BSNT_05418___     51 TGGAACTTGTTTTGCTGAAGTGGGAAACTCAGTTGTCTGCTGTGATATCG    100
                     .||.|||||.|||||.||..|.||.||...||||||.|||||||||||||
BSU35580___tu     48 AGGCACTTGCTTTGCGGAGATCGGCAATAAAGTTGTTTGCTGTGATATCG     97

BSNT_05418___    101 ACGCTGA---AAAAATAAGAGGACTCTTAGCC--------GGAGTAATGC    139
                     |   |||   ||||||.|||        ||||        ||.|||||.|
BSU35580___tu     98 A---TGAATCAAAAATCAGA--------AGCCTGAAAAATGGGGTAATCC    136

BSNT_05418___    140 CGATTTATGAGAAC--GGCCTAAAAGAGCTT-GTGGATAAAAACGTAAAC    186
                     |.||.|||  ||||  ||.||...||| ||| ||.||.|||||.||....
BSU35580___tu    137 CAATCTAT--GAACCAGGGCTTGCAGA-CTTAGTTGAAAAAAATGTGCTG    183

BSNT_05418___    187 GAAAATCG-CTTATTTTTCTCTACTGATATTCCAAAAGCGATTGAAGAAG    235
                     ||..|.|| ||.|..||| .|.|..|||||.||....||.|||...|...
BSU35580___tu    184 GATCAGCGCCTGACCTTT-ACGAACGATATCCCGTCTGCCATTCGGGCCT    232

BSNT_05418___    236 CTGAGATTATTTATATTGCAGTCGGAACACCGATGTCGGAAACAGGGGAA    285
                     |.||.|||||||||||||||||||||||.||.|||||..|||||||.|||
BSU35580___tu    233 CAGATATTATTTATATTGCAGTCGGAACGCCTATGTCCAAAACAGGTGAA    282

BSNT_05418___    286 GCAGATCTGACATTTGTTAAATCTGTTGCCGAAATGATCGGAAAGCATCT    335
                     ||.|||.|.||.|..||.|||.|.|..||..|||..|||||..|||||||
BSU35580___tu    283 GCTGATTTAACGTACGTCAAAGCGGCGGCGAAAACAATCGGTGAGCATCT    332

BSNT_05418___    336 GAACGGCTATAAAGTCATCGTCAACAAAAGCACTGTCCCTGTTGGCACTG    385
                     .||||||||.|||||.|||||.||.||||||||.|||||.|||||.||.|
BSU35580___tu    333 TAACGGCTACAAAGTGATCGTAAATAAAAGCACAGTCCCGGTTGGAACAG    382

BSNT_05418___    386 GAAAGCTCATACAAGGTATCATACAA-----CGTATTTCAAA-AGGAGAA    429
                     |.||.||..|.|||..||||.|.|||     |     ||||| .|||||.
BSU35580___tu    383 GGAAACTGGTGCAATCTATCGTTCAAAAAGCC-----TCAAAGGGGAGAT    427

BSNT_05418___    430 GTTCCTTTCGACGTCGTTTCGAATCCCGAATTCCTTCGTGAAGGAACAGC    479
                     ..||.||| ||.||.||.||.||.||.|||||||||||.|||||..||||
BSU35580___tu    428 ACTCATTT-GATGTTGTATCTAACCCTGAATTCCTTCGGGAAGGGTCAGC    476

BSNT_05418___    480 TATTTACGATACGATGAATATGGAAAGAGCCGTCATCGGCGCGACAAGCG    529
                     .|||.|.||.||||||||||||||..|.|||||.||.||..|.|||||..
BSU35580___tu    477 GATTCATGACACGATGAATATGGAGCGTGCCGTGATTGGTTCAACAAGTC    526

BSNT_05418___    530 AAAGGGCTGCTGCGATAATTGAAGAACTTCATAAGCCTTTTCAAACGAAA    579
                     |.|..||.|||||.||.|||||.|||||||||.||||.||.||..|    
BSU35580___tu    527 ATAAAGCCGCTGCCATCATTGAGGAACTTCATCAGCCATTCCATGC----    572

BSNT_05418___    580 AT--TGTC---AAGTCTAACCTTGAAAGTGCAGAAATGATTAAATATGCT    624
                      |  ||||   ||..|.|||||.|||||||||||||||||||||||.||.
BSU35580___tu    573 -TCCTGTCATTAAAACAAACCTAGAAAGTGCAGAAATGATTAAATACGCC    621

BSNT_05418___    625 GCAAATGCATTTTTGGCTACAAAGATCTCGTTCATTAATGATATCGCGAA    674
                     ||.|||||||||.||||.||||||||.||.||.||.||.||||||||.||
BSU35580___tu    622 GCGAATGCATTTCTGGCGACAAAGATTTCCTTTATCAACGATATCGCAAA    671

BSNT_05418___    675 TATTTGCGAAAGAGTCGGAGCTGACGTATCAAAGGTGTCTGAAGGTGTCG    724
                     .|||||.||..|||||||.||.|||||.|||||.||..||||.|||||.|
BSU35580___tu    672 CATTTGTGAGCGAGTCGGCGCAGACGTTTCAAAAGTTGCTGATGGTGTTG    721

BSNT_05418___    725 GACTCGACAGCAGAATCGGCAATAAATTTTTAAAAGCCGGAATCGGCTTT    774
                     |.||.||||||.|.|||||||..||.||..|.|||||.||.||.||.||.
BSU35580___tu    722 GTCTTGACAGCCGTATCGGCAGAAAGTTCCTTAAAGCTGGTATTGGATTC    771

BSNT_05418___    775 GGTGGCTCCTGCTTCCCTAAAGATACAATGGCTTTATTGCATATCGCGAA    824
                     ||.||.||.||.||.||.||.|||||||..||..|..|.||.|||||.||
BSU35580___tu    772 GGCGGTTCATGTTTTCCAAAGGATACAACCGCGCTGCTTCAAATCGCAAA    821

BSNT_05418___    825 GTCAGCCGGCTACCCTTTTAAAATGATTGAAGCCGTCATCGAGACGAACC    874
                     .||.||.|||||.||.||.||..|.||.|||||.|||||.||.||||||.
BSU35580___tu    822 ATCGGCAGGCTATCCATTCAAGCTCATCGAAGCTGTCATTGAAACGAACG    871

BSNT_05418___    875 AAAAGCAGCGTGCCCACATTGTGCAGAAGCTCCTTGA-TGTGTTCG---G    920
                     ||||||||||||..||.|||||..|.||.|| .|||| |||..|.|   |
BSU35580___tu    872 AAAAGCAGCGTGTTCATATTGTAGATAAACT-TTTGACTGTTATGGGAAG    920

BSNT_05418___    921 CGATTTAAACGGCAAG-ACCATTTCAATTCTTGGTTTGGCATTCAAGCCT    969
                     ||  |.|||.||  || |||||||||.|.||.||.||.||.|||||.||.
BSU35580___tu    921 CG--TCAAAGGG--AGAACCATTTCAGTCCTGGGATTAGCCTTCAAACCG    966

BSNT_05418___    970 AATACAAACGATATGCGCTCAGCTCCATCTCTGGATGTCATTCCGACGCT   1019
                     |||||.||||||.||.|.||.||||||.|.||.|||.|.||.||.|.|||
BSU35580___tu    967 AATACGAACGATGTGAGATCCGCTCCAGCGCTTGATATTATCCCAATGCT   1016

BSNT_05418___   1020 G-AGAAGTCTTGGTGCTAAAGTCAAAGCGTTTGATCCGATTGCGGTTCCT   1068
                     | ||.|| ||.||.||..|.||.|||||.|..|||||||||||..|||||
BSU35580___tu   1017 GCAGCAG-CTGGGCGCCCATGTAAAAGCATACGATCCGATTGCTATTCCT   1065

BSNT_05418___   1069 GAAGCAGAAAAGATTCTGGGCGATCAAGCT---GT-TTACAGCGAAGATC   1114
                     |||||...|..|||.||.|||||.| ||.|   || |||||   .||||.
BSU35580___tu   1066 GAAGCTTCAGCGATCCTTGGCGAAC-AGGTCGAGTATTACA---CAGATG   1111

BSNT_05418___   1115 TGTATGAGACGATTCAAGATACGGATGCCTGCGTCATATTGACAGAGTGG   1164
                     ||||||...||||..||||.||.|||||.|||.|.||.||.||.||.|||
BSU35580___tu   1112 TGTATGCTGCGATGGAAGACACTGATGCATGCCTGATTTTAACGGATTGG   1161

BSNT_05418___   1165 CATG-AGATACAGAACATGGATATTACCAAACTCAAGGCCGCT-TTGAAA   1212
                     |..| ||..|.|||| |||||..||...|||.|.||..|| || ||.|||
BSU35580___tu   1162 CCGGAAGTGAAAGAA-ATGGAGCTTGTAAAAGTGAAAACC-CTCTTAAAA   1209

BSNT_05418___   1213 AATCCCGTCTTAATCGATGGACGTAATATATTTGAAGTTGAAAAAATG-A   1261
                     .|.||.|||.|.||.||.||..|.|||.|||||..|.|||||.|.||| |
BSU35580___tu   1210 CAGCCAGTCATCATTGACGGCAGAAATTTATTTTCACTTGAAGAGATGCA   1259

BSNT_05418___   1262 GAAACGAAG--GTAT-GATCTATCATTCAATCGGACGGC-----------   1297
                     |    |.||  |.|| .||.|||||.||.|||||.||.|           
BSU35580___tu   1260 G----GCAGCCGGATACATTTATCACTCTATCGGCCGTCCCGCTGTTCGG   1305

BSNT_05418___   1298 ----CGGAA------GTACAGGTA-------------------GAAGGAA   1318
                         |||||      | |||.|||                   ||| |||
BSU35580___tu   1306 GGAACGGAACCCTCTG-ACAAGTATTTTCCGGGCTTGCCGCTTGAA-GAA   1353

BSNT_05418___   1319 TT--CT---GAC-----------CAACGTATAA   1335
                     ||  ||   |||           |||..|||||
BSU35580___tu   1354 TTGGCTAAAGACTTGGGAAGCGTCAATTTATAA   1386


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