Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05418 and BSU35580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence dna-align/BSNT_05418___tuaD.1.22522.seq
# -bsequence dna-align/BSU35580___tuaD.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05418___tuaD-BSU35580___tuaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05418___tuaD-BSU35580___tuaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05418___tuaD
# 2: BSU35580___tuaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1433
# Identity: 961/1433 (67.1%)
# Similarity: 961/1433 (67.1%)
# Gaps: 145/1433 (10.1%)
# Score: 2998.5
#
#
#=======================================
BSNT_05418___ 1 ATGTTGAAAAGAATTGCTGTCATTGGGACGGGATATGTCGGGCTGGTGTC 50
.||||||.|||.|||||||||||.||.||.|||||.||.||.||.||
BSU35580___tu 1 ---GTGAAAAAAATAGCTGTCATTGGAACAGGTTATGTAGGACTCGTATC 47
BSNT_05418___ 51 TGGAACTTGTTTTGCTGAAGTGGGAAACTCAGTTGTCTGCTGTGATATCG 100
.||.|||||.|||||.||..|.||.||...||||||.|||||||||||||
BSU35580___tu 48 AGGCACTTGCTTTGCGGAGATCGGCAATAAAGTTGTTTGCTGTGATATCG 97
BSNT_05418___ 101 ACGCTGA---AAAAATAAGAGGACTCTTAGCC--------GGAGTAATGC 139
| ||| ||||||.||| |||| ||.|||||.|
BSU35580___tu 98 A---TGAATCAAAAATCAGA--------AGCCTGAAAAATGGGGTAATCC 136
BSNT_05418___ 140 CGATTTATGAGAAC--GGCCTAAAAGAGCTT-GTGGATAAAAACGTAAAC 186
|.||.||| |||| ||.||...||| ||| ||.||.|||||.||....
BSU35580___tu 137 CAATCTAT--GAACCAGGGCTTGCAGA-CTTAGTTGAAAAAAATGTGCTG 183
BSNT_05418___ 187 GAAAATCG-CTTATTTTTCTCTACTGATATTCCAAAAGCGATTGAAGAAG 235
||..|.|| ||.|..||| .|.|..|||||.||....||.|||...|...
BSU35580___tu 184 GATCAGCGCCTGACCTTT-ACGAACGATATCCCGTCTGCCATTCGGGCCT 232
BSNT_05418___ 236 CTGAGATTATTTATATTGCAGTCGGAACACCGATGTCGGAAACAGGGGAA 285
|.||.|||||||||||||||||||||||.||.|||||..|||||||.|||
BSU35580___tu 233 CAGATATTATTTATATTGCAGTCGGAACGCCTATGTCCAAAACAGGTGAA 282
BSNT_05418___ 286 GCAGATCTGACATTTGTTAAATCTGTTGCCGAAATGATCGGAAAGCATCT 335
||.|||.|.||.|..||.|||.|.|..||..|||..|||||..|||||||
BSU35580___tu 283 GCTGATTTAACGTACGTCAAAGCGGCGGCGAAAACAATCGGTGAGCATCT 332
BSNT_05418___ 336 GAACGGCTATAAAGTCATCGTCAACAAAAGCACTGTCCCTGTTGGCACTG 385
.||||||||.|||||.|||||.||.||||||||.|||||.|||||.||.|
BSU35580___tu 333 TAACGGCTACAAAGTGATCGTAAATAAAAGCACAGTCCCGGTTGGAACAG 382
BSNT_05418___ 386 GAAAGCTCATACAAGGTATCATACAA-----CGTATTTCAAA-AGGAGAA 429
|.||.||..|.|||..||||.|.||| | ||||| .|||||.
BSU35580___tu 383 GGAAACTGGTGCAATCTATCGTTCAAAAAGCC-----TCAAAGGGGAGAT 427
BSNT_05418___ 430 GTTCCTTTCGACGTCGTTTCGAATCCCGAATTCCTTCGTGAAGGAACAGC 479
..||.||| ||.||.||.||.||.||.|||||||||||.|||||..||||
BSU35580___tu 428 ACTCATTT-GATGTTGTATCTAACCCTGAATTCCTTCGGGAAGGGTCAGC 476
BSNT_05418___ 480 TATTTACGATACGATGAATATGGAAAGAGCCGTCATCGGCGCGACAAGCG 529
.|||.|.||.||||||||||||||..|.|||||.||.||..|.|||||..
BSU35580___tu 477 GATTCATGACACGATGAATATGGAGCGTGCCGTGATTGGTTCAACAAGTC 526
BSNT_05418___ 530 AAAGGGCTGCTGCGATAATTGAAGAACTTCATAAGCCTTTTCAAACGAAA 579
|.|..||.|||||.||.|||||.|||||||||.||||.||.||..|
BSU35580___tu 527 ATAAAGCCGCTGCCATCATTGAGGAACTTCATCAGCCATTCCATGC---- 572
BSNT_05418___ 580 AT--TGTC---AAGTCTAACCTTGAAAGTGCAGAAATGATTAAATATGCT 624
| |||| ||..|.|||||.|||||||||||||||||||||||.||.
BSU35580___tu 573 -TCCTGTCATTAAAACAAACCTAGAAAGTGCAGAAATGATTAAATACGCC 621
BSNT_05418___ 625 GCAAATGCATTTTTGGCTACAAAGATCTCGTTCATTAATGATATCGCGAA 674
||.|||||||||.||||.||||||||.||.||.||.||.||||||||.||
BSU35580___tu 622 GCGAATGCATTTCTGGCGACAAAGATTTCCTTTATCAACGATATCGCAAA 671
BSNT_05418___ 675 TATTTGCGAAAGAGTCGGAGCTGACGTATCAAAGGTGTCTGAAGGTGTCG 724
.|||||.||..|||||||.||.|||||.|||||.||..||||.|||||.|
BSU35580___tu 672 CATTTGTGAGCGAGTCGGCGCAGACGTTTCAAAAGTTGCTGATGGTGTTG 721
BSNT_05418___ 725 GACTCGACAGCAGAATCGGCAATAAATTTTTAAAAGCCGGAATCGGCTTT 774
|.||.||||||.|.|||||||..||.||..|.|||||.||.||.||.||.
BSU35580___tu 722 GTCTTGACAGCCGTATCGGCAGAAAGTTCCTTAAAGCTGGTATTGGATTC 771
BSNT_05418___ 775 GGTGGCTCCTGCTTCCCTAAAGATACAATGGCTTTATTGCATATCGCGAA 824
||.||.||.||.||.||.||.|||||||..||..|..|.||.|||||.||
BSU35580___tu 772 GGCGGTTCATGTTTTCCAAAGGATACAACCGCGCTGCTTCAAATCGCAAA 821
BSNT_05418___ 825 GTCAGCCGGCTACCCTTTTAAAATGATTGAAGCCGTCATCGAGACGAACC 874
.||.||.|||||.||.||.||..|.||.|||||.|||||.||.||||||.
BSU35580___tu 822 ATCGGCAGGCTATCCATTCAAGCTCATCGAAGCTGTCATTGAAACGAACG 871
BSNT_05418___ 875 AAAAGCAGCGTGCCCACATTGTGCAGAAGCTCCTTGA-TGTGTTCG---G 920
||||||||||||..||.|||||..|.||.|| .|||| |||..|.| |
BSU35580___tu 872 AAAAGCAGCGTGTTCATATTGTAGATAAACT-TTTGACTGTTATGGGAAG 920
BSNT_05418___ 921 CGATTTAAACGGCAAG-ACCATTTCAATTCTTGGTTTGGCATTCAAGCCT 969
|| |.|||.|| || |||||||||.|.||.||.||.||.|||||.||.
BSU35580___tu 921 CG--TCAAAGGG--AGAACCATTTCAGTCCTGGGATTAGCCTTCAAACCG 966
BSNT_05418___ 970 AATACAAACGATATGCGCTCAGCTCCATCTCTGGATGTCATTCCGACGCT 1019
|||||.||||||.||.|.||.||||||.|.||.|||.|.||.||.|.|||
BSU35580___tu 967 AATACGAACGATGTGAGATCCGCTCCAGCGCTTGATATTATCCCAATGCT 1016
BSNT_05418___ 1020 G-AGAAGTCTTGGTGCTAAAGTCAAAGCGTTTGATCCGATTGCGGTTCCT 1068
| ||.|| ||.||.||..|.||.|||||.|..|||||||||||..|||||
BSU35580___tu 1017 GCAGCAG-CTGGGCGCCCATGTAAAAGCATACGATCCGATTGCTATTCCT 1065
BSNT_05418___ 1069 GAAGCAGAAAAGATTCTGGGCGATCAAGCT---GT-TTACAGCGAAGATC 1114
|||||...|..|||.||.|||||.| ||.| || ||||| .||||.
BSU35580___tu 1066 GAAGCTTCAGCGATCCTTGGCGAAC-AGGTCGAGTATTACA---CAGATG 1111
BSNT_05418___ 1115 TGTATGAGACGATTCAAGATACGGATGCCTGCGTCATATTGACAGAGTGG 1164
||||||...||||..||||.||.|||||.|||.|.||.||.||.||.|||
BSU35580___tu 1112 TGTATGCTGCGATGGAAGACACTGATGCATGCCTGATTTTAACGGATTGG 1161
BSNT_05418___ 1165 CATG-AGATACAGAACATGGATATTACCAAACTCAAGGCCGCT-TTGAAA 1212
|..| ||..|.|||| |||||..||...|||.|.||..|| || ||.|||
BSU35580___tu 1162 CCGGAAGTGAAAGAA-ATGGAGCTTGTAAAAGTGAAAACC-CTCTTAAAA 1209
BSNT_05418___ 1213 AATCCCGTCTTAATCGATGGACGTAATATATTTGAAGTTGAAAAAATG-A 1261
.|.||.|||.|.||.||.||..|.|||.|||||..|.|||||.|.||| |
BSU35580___tu 1210 CAGCCAGTCATCATTGACGGCAGAAATTTATTTTCACTTGAAGAGATGCA 1259
BSNT_05418___ 1262 GAAACGAAG--GTAT-GATCTATCATTCAATCGGACGGC----------- 1297
| |.|| |.|| .||.|||||.||.|||||.||.|
BSU35580___tu 1260 G----GCAGCCGGATACATTTATCACTCTATCGGCCGTCCCGCTGTTCGG 1305
BSNT_05418___ 1298 ----CGGAA------GTACAGGTA-------------------GAAGGAA 1318
||||| | |||.||| ||| |||
BSU35580___tu 1306 GGAACGGAACCCTCTG-ACAAGTATTTTCCGGGCTTGCCGCTTGAA-GAA 1353
BSNT_05418___ 1319 TT--CT---GAC-----------CAACGTATAA 1335
|| || ||| |||..|||||
BSU35580___tu 1354 TTGGCTAAAGACTTGGGAAGCGTCAATTTATAA 1386
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