Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05114 and BSU33800

See Amino acid alignment / Visit BSNT_05114 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:40
# Commandline: needle
#    -asequence dna-align/BSNT_05114___opuCD.1.22522.seq
#    -bsequence dna-align/BSU33800___opuCD.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05114___opuCD-BSU33800___opuCD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05114___opuCD-BSU33800___opuCD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05114___opuCD
# 2: BSU33800___opuCD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 696
# Identity:     649/696 (93.2%)
# Similarity:   649/696 (93.2%)
# Gaps:          27/696 ( 3.9%)
# Score: 3131.5
# 
#
#=======================================

BSNT_05114___      1 ATGGAAGTACTACAGCAGCTTGGCACATACTATTCGCAAAACGGCGGTTA     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33800___op      1 ATGGAAGTACTACAGCAGCTTGGCACATACTATTCGCAAAACGGCGGTTA     50

BSNT_05114___     51 TGTGCTGCAGGAGTTTTACCGCCATTTTCTGATGTCGGTATACGGCGTTT    100
                     .|||||||||||.||||||||||||||||||||||||||.||.|||||||
BSU33800___op     51 CGTGCTGCAGGAATTTTACCGCCATTTTCTGATGTCGGTGTATGGCGTTT    100

BSNT_05114___    101 TATTTGCCGCCATTGTTGGAATTCCGCTCGGCATCCTGATAGCCAGATAC    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33800___op    101 TATTTGCCGCCATTGTTGGAATTCCGCTCGGCATCCTGATAGCCAGATAC    150

BSNT_05114___    151 AGAAGATTAAGCGGATGGGTTTTTGCGGTCACGAACGTCATTCAGACGAT    200
                     |||||||||||||||||||||||||||||||||||.|||||||||||.||
BSU33800___op    151 AGAAGATTAAGCGGATGGGTTTTTGCGGTCACGAATGTCATTCAGACCAT    200

BSNT_05114___    201 CCCGGCTCTCGCCATGCTTGCCGTGCTGATGCTTGTCATGGGGCTGGGCG    250
                     ||||||||||||||||||.|||||||||||||||||||||||||||||||
BSU33800___op    201 CCCGGCTCTCGCCATGCTCGCCGTGCTGATGCTTGTCATGGGGCTGGGCG    250

BSNT_05114___    251 CTAATACGGTGATATTGTCATTATTTCTGTATTCTCTTCTGCCGATTATC    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33800___op    251 CTAATACGGTGATATTGTCATTATTTCTGTATTCTCTTCTGCCGATTATC    300

BSNT_05114___    301 AGAAATACGTATACAGGGATTATCAGTATTGAGCACGCCTATCTTGAATC    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33800___op    301 AGAAATACGTATACAGGGATTATCAGTATTGAGCACGCCTATCTTGAATC    350

BSNT_05114___    351 CGGAAAAGCAATGGGGATGACAAAATTTCAAGTGCTGCGGATGGTCGAGC    400
                     .|||||||||||||||||||||||||||||||||||||||||||||||||
BSU33800___op    351 GGGAAAAGCAATGGGGATGACAAAATTTCAAGTGCTGCGGATGGTCGAGC    400

BSNT_05114___    401 TTCCGCTTGCGCTTTCGGTCATAATGGCCGGCCTGCGCACCGCGCTTGTC    450
                     ||||||||||||||||.|||||||||||||||||||||||||||||||||
BSU33800___op    401 TTCCGCTTGCGCTTTCTGTCATAATGGCCGGCCTGCGCACCGCGCTTGTC    450

BSNT_05114___    451 ATTGCCATCGGCATTACGGCCATCGGGACATTTGTCGGTGCAGGCGGTCT    500
                     |||||.|||||||||||||||||||||||||||||||||||.||||||||
BSU33800___op    451 ATTGCGATCGGCATTACGGCCATCGGGACATTTGTCGGTGCTGGCGGTCT    500

BSNT_05114___    501 CGGGGACATCATCGTCAGGGGATCAAACGCCACAAACGGAACCGCGATTA    550
                     ||||||||||||||||||.|||||||||||||||||||||||||||||||
BSU33800___op    501 CGGGGACATCATCGTCAGAGGATCAAACGCCACAAACGGAACCGCGATTA    550

BSNT_05114___    551 TATTAGCGGGAGCGATCCCCACAGCTCTGATGGCGGTGATTGCCGATTTG    600
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33800___op    551 TATTAGCGGGAGCGATCCCCACAGCTCTGATGGCGGTGATTGCCGATTTG    600

BSNT_05114___    601 GTCATGGGCTGGCTTGAACGAGCATTAAGCCCGATTAAAAAGAGAAAGAA    650
                     ||||||||||||||||||||||||||||||||||||||||||| |||.|.
BSU33800___op    601 GTCATGGGCTGGCTTGAACGAGCATTAAGCCCGATTAAAAAGA-AAAAAG    649

BSNT_05114___    651 GAAA----AATCTGGCAGGTGCCGCATAA-----------------    675
                     ||||    |.|.|.||.|.|     |.||                 
BSU33800___op    650 GAAATTTTATTATAGCTGAT-----AGAAAAACCACCTCTATTTAA    690


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.