Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06190 and BSU33780

See Amino acid alignment / Visit BSNT_06190 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:49
# Commandline: needle
#    -asequence dna-align/BSNT_06190.1.22522.seq
#    -bsequence dna-align/BSU33780___sdpI.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06190-BSU33780___sdpI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06190-BSU33780___sdpI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06190
# 2: BSU33780___sdpI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 779
# Identity:     375/779 (48.1%)
# Similarity:   375/779 (48.1%)
# Gaps:         298/779 (38.3%)
# Score: 746.5
# 
#
#=======================================

BSNT_06190         1 ATGA--AAAAATATTTCTTTGCACTAATTATGATA--------------G     34
                     ||||  ||||||| |..|||.|| |||||||..||              |
BSU33780___sd      1 ATGAAGAAAAATA-TAATTTCCA-TAATTATTGTATGTTTGAGTTTCTTG     48

BSNT_06190        35 CCTTAACAATTTTAGCTTGGGTTATAACATATTCACACTTACCTAATGAA     84
                     .|||  |||||.||       |||||.||     |.||.|.||..|.|||
BSU33780___sd     49 ACTT--CAATTATA-------TTATATCA-----ATACCTTCCAGAAGAA     84

BSNT_06190        85 TTGGCAACACACTGGGGTATA-AGTGGTGAAGCAGATGACTTTTCAAAGA    133
                             |.||.|    ||| |.||||.|.|             |||.|
BSU33780___sd     85 --------ATACCG----ATACAATGGTCAGG-------------AAATA    109

BSNT_06190       134 AACCTACGGCCATAGCAACGTTGGTAGGTATAA----TGATAGTACAATA    179
                     |||   ||||   .||||   |.|||  |.|||    |.|    ||||||
BSU33780___sd    110 AAC---CGGC---TGCAA---TTGTA--TCTAAACCTTTA----ACAATA    144

BSNT_06190       180 TATTCTTA----TGGTGCTTATTCCTAAAATTGATCCCCGACGAAACTAT    225
                     | ||.|||    ||.|| ||||.|.|   |||.||            |||
BSU33780___sd    145 T-TTATTATACCTGTTG-TTATGCTT---ATTTAT------------TAT    177

BSNT_06190       226 CCGACCTTT---------ACTCGT---------------------GCA-T    244
                     |..||.|||         |||..|                     ||| |
BSU33780___sd    178 CTTACTTTTTATATGTTAACTATTAAGTCTACACAAAAAAATAAAGCATT    227

BSNT_06190       245 ACTTAT-CTA-TTTTTAATACCATGTTTCTCGTCTTATTTCTCATTAATT    292
                     .|||.| ||| .||.|||||..|||||..||.|.||||.|       |||
BSU33780___sd    228 GCTTTTCCTAGCTTCTAATAATATGTTAATCCTTTTATAT-------ATT    270

BSNT_06190       293 TGATTACAATATTGACGGGGCTGGGTATTAAACTTCCTATTCCATA--TT    340
                        ||||||           ||     .|.||||  ||||| .|||  ||
BSU33780___sd    271 ---TTACAA-----------CT-----CTCAACT--CTATT-GATAAGTT    298

BSNT_06190       341 TAGG--------------TTCATTTATT-------CTTGG---AGCTATA    366
                     ||||              ||.|||||.|       |||||   .|.|||.
BSU33780___sd    299 TAGGATACGAAGTGAATATTGATTTAATAATAGGGCTTGGTGTTGGTATC    348

BSNT_06190       367 TTCATGGTTTTTGGT---AATTTTATTCAGC-AGGTTAGACCGAA-----    407
                     ||..|..||.|||||   ||||.|||.|||| ||  .|||.|.||     
BSU33780___sd    349 TTTTTAATTATTGGTGGAAATTCTATGCAGCTAG--CAGAACAAAACCAT    396

BSNT_06190       408 -TTTTTTCTTGGGAATTAGAACTCCTTGGACATTAAGCAG-TGAAAATGT    455
                      ||.||     |||.|.||.||.||||||||||||| .|| |||.|.|||
BSU33780___sd    397 CTTATT-----GGATTGAGGACACCTTGGACATTAA-AAGATGAGACTGT    440

BSNT_06190       456 ATGGAGGCTTACACATAGATTGAGTTCAAGAATATTTGTTCTAGCCGGAA    505
                     .||||..||...|.||.|.||....||.|.|.||.|||   |||      
BSU33780___sd    441 TTGGAAACTGGGAAATCGCTTTGCCTCTAAAGTACTTG---TAG------    481

BSNT_06190       506 TCAT-TATTGTTTTAACTGCATTTATTCCTGAGTCTTTTACCGAGCCGAT    554
                        | |.|.||||||       |.||..||| .|||||.|          
BSU33780___sd    482 ---TGTGTGGTTTTA-------TAATAGCTG-TTCTTTCA----------    510

BSNT_06190       555 TATTTTTATAGCGGCAATAGGTAGTAT-ACTCTTATCCGTAT--------    595
                      .||||||.|| |..||||     ||| |.||||||   |||        
BSU33780___sd    511 -TTTTTTACAG-GAGAATA-----TATAATTCTTAT---TATGATTGTGC    550

BSNT_06190       596 ---------TCGCAT--CTTATTTCA----------TATATCA-------    617
                              |.||||  .||||||||          .||||||       
BSU33780___sd    551 TAGTTCTTCTAGCATTAGTTATTTCAACACTAGCTTCATATCATTATTAC    600

BSNT_06190       618 AAAAGAGCTAAATAAATAG----------    636
                     ||||     ||.||||..|          
BSU33780___sd    601 AAAA-----AATTAAACGGTTCACGTTGA    624


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