Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05006 and BSU33540

See Amino acid alignment / Visit BSNT_05006 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:36
# Commandline: needle
#    -asequence dna-align/BSNT_05006.1.22522.seq
#    -bsequence dna-align/BSU33540___yvaB.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05006-BSU33540___yvaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05006-BSU33540___yvaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05006
# 2: BSU33540___yvaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 636
# Identity:     466/636 (73.3%)
# Similarity:   466/636 (73.3%)
# Gaps:         165/636 (25.9%)
# Score: 2299.5
# 
#
#=======================================

BSNT_05006         0 --------------------------------------------------      0
                                                                       
BSU33540___yv      1 ATGGCAAAAGTATTATATATCACTGCTCATCCACATGACGAAGCAACTTC     50

BSNT_05006         0 --------------------------------------------------      0
                                                                       
BSU33540___yv     51 GTACAGTATGGCAACAGGTAAAGCATTTATCGAATCTTACAAAGAAGCGA    100

BSNT_05006         0 --------------------------------------------------      0
                                                                       
BSU33540___yv    101 ATCCAAATGATGAAGTTGTACATATCGATTTGTACAAAGAAAACATTCCG    150

BSNT_05006         1 -------------ATGTATTTAGCG--TGGGGAAAGCTTCAGTCAGGTAC     35
                                  ||||||||||||  |||||||||||||||||||||||
BSU33540___yv    151 CACATTGACGCAGATGTATTTAGCGGATGGGGAAAGCTTCAGTCAGGTAC    200

BSNT_05006        36 AGGCTTTGAAGAGCTTTCTGAAAGCGAAAAAGCGAAAGTAGGCCGTTTGG     85
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33540___yv    201 AGGCTTTGAAGAGCTTTCTGAAAGCGAAAAAGCGAAAGTAGGCCGTTTGG    250

BSNT_05006        86 GAGAGCTTAGCGATCAATTTGCATCAGCTGATAAGTACGTATTTGTTACT    135
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33540___yv    251 GAGAGCTTAGCGATCAATTTGCATCAGCTGATAAGTACGTATTTGTTACT    300

BSNT_05006       136 CCTTTATGGAACTTCTCATTCCCGCCAGTGATGAAAGCGTATCTCGATTC    185
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33540___yv    301 CCTTTATGGAACTTCTCATTCCCGCCAGTGATGAAAGCGTATCTCGATTC    350

BSNT_05006       186 TGTTGCTGTTGCAGGAAAATCATTCAAATACACAGAACAAGGCCCTATTG    235
                     ||||||||||||||||||||||||||||||||||||||||||.|||.|.|
BSU33540___yv    351 TGTTGCTGTTGCAGGAAAATCATTCAAATACACAGAACAAGGTCCTGTCG    400

BSNT_05006       236 GCTTGTTGACTGATAAAAAAGCAATTCATATCCAAGCGCGCGGCGGCTAC    285
                     |||||||.||||||||||||||||||||||||||||||||||||||||||
BSU33540___yv    401 GCTTGTTAACTGATAAAAAAGCAATTCATATCCAAGCGCGCGGCGGCTAC    450

BSNT_05006       286 TATTCAGAAGGCCCTGCGGCTGAGATGGAAATGGGGCACCGCTACATCGG    335
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33540___yv    451 TATTCAGAAGGCCCTGCGGCTGAGATGGAAATGGGGCACCGCTACATCGG    500

BSNT_05006       336 CATCATGATGAACTTCTTCGGCGTACCATCATTCGAAGGCATTTTCGTAG    385
                     ||||||||||||||||||||||||||||||||||||.|||||||||||||
BSU33540___yv    501 CATCATGATGAACTTCTTCGGCGTACCATCATTCGATGGCATTTTCGTAG    550

BSNT_05006       386 AGGGACATAATGCGGAGCCTGATAAAGCACAGCAAATCAAAGAAGACGCG    435
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33540___yv    551 AGGGACATAATGCGGAGCCTGATAAAGCACAGCAAATCAAAGAAGACGCG    600

BSNT_05006       436 ATTGCGCGTGCGAAAGAAGCAGGAAAAACATTCTAA    471
                     ||||||||||||||||||||||||||||||||||||
BSU33540___yv    601 ATTGCGCGTGCGAAAGAAGCAGGAAAAACATTCTAA    636


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.