Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04939 and BSU33170

See Amino acid alignment / Visit BSNT_04939 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_04939___yvrB.1.22522.seq
#    -bsequence dna-align/BSU33170___yvrB.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04939___yvrB-BSU33170___yvrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04939___yvrB-BSU33170___yvrB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04939___yvrB
# 2: BSU33170___yvrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1062
# Identity:     973/1062 (91.6%)
# Similarity:   973/1062 (91.6%)
# Gaps:          78/1062 ( 7.3%)
# Score: 4821.0
# 
#
#=======================================

BSNT_04939___      0 --------------------------------------------------      0
                                                                       
BSU33170___yv      1 TTGCGGAAAGCATTTACCCGGATACGTTTAAGGAATAATCGTTATGCCGC     50

BSNT_04939___      1 ----------------------------GTGAGCGTCATCTTAGGAATTT     22
                                                 ||||||.|||||||||||||||
BSU33170___yv     51 ATATATCATTGGTTTCTCATTTTTAGCCGTGAGCATCATCTTAGGAATTT    100

BSNT_04939___     23 CTTGCGGCAGCCTGCATATTCCTATTCCCGCTGTTTTTCGTGTCTTTTGG     72
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33170___yv    101 CTTGCGGCAGCCTGCATATTCCTATTCCCGCTGTTTTTCGTGTCTTTTGG    150

BSNT_04939___     73 CATCAAGGTTTCGGCGGCTCTATCGGTTCTGATGATCCGATGTACACTAA    122
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33170___yv    151 CATCAAGGTTTCGGCGGCTCTATCGGTTCTGATGATCCGATGTACACTAA    200

BSNT_04939___    123 TATTATGATGAATATCAGACTGCCGAGAGTTGTGCTGGCCGCCCTTGTGG    172
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33170___yv    201 TATTATGATGAATATCAGACTGCCGAGAGTTGTGCTGGCCGCCCTTGTGG    250

BSNT_04939___    173 GGGCGGCTCTTTCTATTGCAGGGGCCGCTTTTCAAGGATTGTTGAAAAAT    222
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33170___yv    251 GGGCGGCTCTTTCTATTGCAGGGGCCGCTTTTCAAGGATTGTTGAAAAAT    300

BSNT_04939___    223 CCGCTTGCTGATCCCTATACGCTAGGTGTGTCATCCGGTGCTTCAGTCGG    272
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33170___yv    301 CCGCTTGCTGATCCCTATACGCTAGGTGTGTCATCCGGTGCTTCAGTCGG    350

BSNT_04939___    273 AGCTGTTGTGACTCTGTTCTTAGGTCTGCACCTTCCTGTCATCGGAGGGT    322
                     |||||||||||||||||||||||||.||||||||||||||||||||||||
BSU33170___yv    351 AGCTGTTGTGACTCTGTTCTTAGGTTTGCACCTTCCTGTCATCGGAGGGT    400

BSNT_04939___    323 TTACACTCCCGGTTGTGAGTGTAGCCGCGGCACTTGCCACGATGGCGGCG    372
                     ||||||||||||||.|||||||||||||||||||.|||||||||||||||
BSU33170___yv    401 TTACACTCCCGGTTTTGAGTGTAGCCGCGGCACTGGCCACGATGGCGGCG    450

BSNT_04939___    373 GTCCTTTTCTTCAGCCGCCTCGTTCATGCTTCGATGTCTGTTTCCACCCT    422
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33170___yv    451 GTCCTTTTCTTCAGCCGCCTCGTTCATGCTTCGATGTCTGTTTCCACCCT    500

BSNT_04939___    423 CATTTTGACCGGTGTCATCACCAACTCTTTTTTGGGCGCATTTATTTCTC    472
                     |||||||||||||||||||||||||||||||||.||||||||||||||||
BSU33170___yv    501 CATTTTGACCGGTGTCATCACCAACTCTTTTTTAGGCGCATTTATTTCTC    550

BSNT_04939___    473 TTATCATCGCCTTGACAGGAGACAACCTGCTTCCGATTGTGCATTGGCTG    522
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33170___yv    551 TTATCATCGCCTTGACAGGAGACAACCTGCTTCCGATTGTGCATTGGCTG    600

BSNT_04939___    523 CTTGGCAGCGTCTCAATGAGGGGCTGGAGCTATGTTATTTTGTTTCTCCC    572
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33170___yv    601 CTTGGCAGCGTCTCAATGAGGGGCTGGAGCTATGTTATTTTGTTTCTCCC    650

BSNT_04939___    573 GTTTTTTCTTTTGGGAACCATTTTATTGATTATAAACGGAAGGGAACTGA    622
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33170___yv    651 GTTTTTTCTTTTGGGAACCATTTTATTGATTATAAACGGAAGGGAACTGA    700

BSNT_04939___    623 ACGTGATGACATATGGAGAAGATAAAGCAAAGCTTCTTGGAGTCAGTGTT    672
                     ||||||||||||||||||||||||||||||||||||||||||||||.|||
BSU33170___yv    701 ACGTGATGACATATGGAGAAGATAAAGCAAAGCTTCTTGGAGTCAGCGTT    750

BSNT_04939___    673 CAGCAGAGGAAGATGCTGATTTTAATAGCCGGATCTCTTTTGACGGGAAG    722
                     |||||||||||||||.||||||||||||||||||||||||||||||||||
BSU33170___yv    751 CAGCAGAGGAAGATGATGATTTTAATAGCCGGATCTCTTTTGACGGGAAG    800

BSNT_04939___    723 CGCTGTGGCAGTATCGGGTACGATTGGCTTTGTCGGCCTTGTGATTCCGC    772
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33170___yv    801 CGCTGTGGCAGTATCGGGTACGATTGGCTTTGTCGGCCTTGTGATTCCGC    850

BSNT_04939___    773 ATATCACAAGGCTTTTGTGGGGAACGGACCATCGGCATTTACTGCCGCTG    822
                     |||||||||||||||||||||||||||||||||||||||||||||||.||
BSU33170___yv    851 ATATCACAAGGCTTTTGTGGGGAACGGACCATCGGCATTTACTGCCGTTG    900

BSNT_04939___    823 TCCGCCTTGCTCGGGGCAGGGTTTCTCGTTTTAGCCGATCTGCTTTCCAG    872
                     |||||||||||.||||||||||||||.|||||||||||||||||||||||
BSU33170___yv    901 TCCGCCTTGCTTGGGGCAGGGTTTCTTGTTTTAGCCGATCTGCTTTCCAG    950

BSNT_04939___    873 AACCATCATTGAGCCGATTGAACTGCCGATCGGGATCATTACGTCCTTGG    922
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU33170___yv    951 AACCATCATTGAGCCGATTGAACTGCCGATCGGGATCATTACGTCCTTGG   1000

BSNT_04939___    923 CGGGAGCGCCTGTGTTCGCTCTTATTTTAATTCGGCAGCACCGCGGGGGG    972
                     ||||||||||||||||||||||||||||||||||||||||.|||||||||
BSU33170___yv   1001 CGGGAGCGCCTGTGTTCGCTCTTATTTTAATTCGGCAGCATCGCGGGGGG   1050

BSNT_04939___    973 AGAAGCTTATGA    984
                     ||||||||||||
BSU33170___yv   1051 AGAAGCTTATGA   1062


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.