Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04884 and BSU32930

See Amino acid alignment / Visit BSNT_04884 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:23
# Commandline: needle
#    -asequence dna-align/BSNT_04884.1.22522.seq
#    -bsequence dna-align/BSU32930___yusU.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04884-BSU32930___yusU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04884-BSU32930___yusU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04884
# 2: BSU32930___yusU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity:     242/288 (84.0%)
# Similarity:   242/288 (84.0%)
# Gaps:          42/288 (14.6%)
# Score: 1194.0
# 
#
#=======================================

BSNT_04884         1 ------------------------------------------ATGGAACA      8
                                                               ||||||||
BSU32930___yu      1 TTGAGAAAGCTCCTTGCTGTTTTTTCGAAAGGAAGATGGAAAATGGAACA     50

BSNT_04884         9 AAAACTTCAGGAGCAGCTTGATGGATTGCTAGAGAAGTATACTGAGCTTC     58
                     ||||||||||||||||||||||||||||||.|||||||||||||||||||
BSU32930___yu     51 AAAACTTCAGGAGCAGCTTGATGGATTGCTGGAGAAGTATACTGAGCTTC    100

BSNT_04884        59 TGCTTGGTGAAACAAACGATGAGCTAAAAGAAGAAGTGAAGCAATGGATT    108
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU32930___yu    101 TGCTTGGTGAAACAAACGATGAGCTAAAAGAAGAAGTGAAGCAATGGATT    150

BSNT_04884       109 TTGTACACGCATATAGCCAAGAGCATGCCTCCGCTCGCTAAGCATTGGAA    158
                     ||||||||.|||||||||||.|||||||||||||||||||||||||||||
BSU32930___yu    151 TTGTACACCCATATAGCCAAAAGCATGCCTCCGCTCGCTAAGCATTGGAA    200

BSNT_04884       159 TGCGACATACCCCGACGCAAAGCAGGGCATTAAAGAGATCATTCAGCATA    208
                     ||||||||||||||||||.|||||||||||||||||||||||||||||||
BSU32930___yu    201 TGCGACATACCCCGACGCGAAGCAGGGCATTAAAGAGATCATTCAGCATA    250

BSNT_04884       209 TTAAGGAATTAAATGAAGCGCATCGAAACAAACAATAG    246
                     ||||||||||||||||||||||||||||||||||||||
BSU32930___yu    251 TTAAGGAATTAAATGAAGCGCATCGAAACAAACAATAG    288


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.