Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04688 and BSU31860
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_04688___yueB.1.22522.seq
# -bsequence dna-align/BSU31860___yueB.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04688___yueB-BSU31860___yueB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04688___yueB-BSU31860___yueB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04688___yueB
# 2: BSU31860___yueB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3298
# Identity: 2809/3298 (85.2%)
# Similarity: 2809/3298 (85.2%)
# Gaps: 185/3298 ( 5.6%)
# Score: 12252.0
#
#
#=======================================
BSNT_04688___ 1 ATGACAGAACAACGAAAAAGCTTGATCAAGTTAATATCCGCCGTCATCAT 50
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 1 ATGACAGAACAACGAAAAAGCTTGATCAAGTTAATATCCGCCGTCATCAT 50
BSNT_04688___ 51 CATTTTGCTGCTGCCGGTGTTGTTTTTCCGATTTATCGGAGACGACCCAA 100
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 51 CATTTTGCTGCTGCCGGTGTTGTTTTTCCGATTTATCGGAGACGACCCAA 100
BSNT_04688___ 101 CGAAAAAAGCAGTCAATTCCACCCGACAAATCGCGGTGGTGAATGAAGAC 150
|||||||||||||||||||.|||||.||||||||||||||||||||||||
BSU31860___yu 101 CGAAAAAAGCAGTCAATTCTACCCGGCAAATCGCGGTGGTGAATGAAGAC 150
BSNT_04688___ 151 ACAGGCGTATTGAGTGATGAGGTAAAGTCTGATGAAGAGGACAAATCCGC 200
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 151 ACAGGCGTATTGAGTGATGAGGTAAAGTCTGATGAAGAGGACAAATCCGC 200
BSNT_04688___ 201 CCAGTTCGGCAAGGAAGTAGCGGCCGTTCTGGGTGAACGTCCTGATTATT 250
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 201 CCAGTTCGGCAAGGAAGTAGCGGCCGTTCTGGGTGAACGTCCTGATTATT 250
BSNT_04688___ 251 CGTGGACGGTCGTAAACCGAAGCGCGGCCGAGACCGGTCTCGCTTCAAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 251 CGTGGACGGTCGTAAACCGAAGCGCGGCCGAGACCGGTCTCGCTTCAAAG 300
BSNT_04688___ 301 AAATACGATGCGATTGTCTACATTCCCTCAGACTTCTCAAAAAACATTTT 350
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 301 AAATACGATGCGATTGTCTACATTCCCTCAGACTTCTCAAAAAACATTTT 350
BSNT_04688___ 351 GAGCTATGACAAAGACCATCCTCAAAAAGCAACGCTCGAATTCAGCATTC 400
|||||||||||||||||||||||||||.||||||||||||||||||||||
BSU31860___yu 351 GAGCTATGACAAAGACCATCCTCAAAAGGCAACGCTCGAATTCAGCATTC 400
BSNT_04688___ 401 AAGATAACCTGAATGCGGTTAACAAAGAAAAAGTTCAGCGTGAGCTTGAG 450
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 401 AAGATAACCTGAATGCGGTTAACAAAGAAAAAGTTCAGCGTGAGCTTGAG 450
BSNT_04688___ 451 GATGCCCAAAAGACAATGAACAAAAAAATGTCGGCCTTATACTGGAATTT 500
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 451 GATGCCCAAAAGACAATGAACAAAAAAATGTCGGCCTTATACTGGAATTT 500
BSNT_04688___ 501 TGTTTCACAAAAAGTGGACAACATCAGAGGAGAATTTGACAAGATCGTCA 550
||||||.|||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 501 TGTTTCGCAAAAAGTGGACAACATCAGAGGAGAATTTGACAAGATCGTCA 550
BSNT_04688___ 551 ATAAAGAATCTGAATTCCAGAATGTCATGTACAACTTTTACAAACCAAGC 600
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 551 ATAAAGAATCTGAATTCCAGAATGTCATGTACAACTTTTACAAACCAAGC 600
BSNT_04688___ 601 TCTAATGATTTAGCAGGTGAAATCAAACAGCAAAAAGACTTAATCGATGA 650
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 601 TCTAATGATTTAGCAGGTGAAATCAAACAGCAAAAAGACTTAATCGATGA 650
BSNT_04688___ 651 GCTGAAGAAATCAATGAATGAAGCGCAAGGCACGACAAAAGAAAAAGCTT 700
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 651 GCTGAAGAAATCAATGAATGAAGCGCAAGGCACGACAAAAGAAAAAGCTT 700
BSNT_04688___ 701 CTACAGCGGAGGAAGCCAAAAATACGCTGAAAGAATTCATTGATACAGTT 750
||||.|||||||||||||||||.|||||||||||||||||||||||||||
BSU31860___yu 701 CTACGGCGGAGGAAGCCAAAAACACGCTGAAAGAATTCATTGATACAGTT 750
BSNT_04688___ 751 GAAAGATACAAAGAATATCAAGAAAATCAGAAAAAGCTGCTTTTGGCAGC 800
|||||.|||||||||||||||||.||||||||||||||||||||||||||
BSU31860___yu 751 GAAAGGTACAAAGAATATCAAGAGAATCAGAAAAAGCTGCTTTTGGCAGC 800
BSNT_04688___ 801 CCAAGATTCAACACAGCAGCAAATCCGGACAGGTCTGGATGCCATCCAAG 850
|||.||||||||||||||||||||||||||||||||||||||||||||.|
BSU31860___yu 801 CCAGGATTCAACACAGCAGCAAATCCGGACAGGTCTGGATGCCATCCAGG 850
BSNT_04688___ 851 CACAGCAAAAGGCGAATCAGTTCAGCGAACGCATGAGCGGATTGGCAACT 900
|||||||||||||||||||||||||||||||||||||||||||||||||.
BSU31860___yu 851 CACAGCAAAAGGCGAATCAGTTCAGCGAACGCATGAGCGGATTGGCAACC 900
BSNT_04688___ 901 GGGATTGGCCAAGCGAAGACACAGCTCGGACTTACTAGTCTTGCTCTGAA 950
|||||.|||||||||||||||||..|.|||||.||.|..|||||..||||
BSU31860___yu 901 GGGATCGGCCAAGCGAAGACACAAATAGGACTGACAAACCTTGCGTTGAA 950
BSNT_04688___ 951 AAGTGCAGAACAGACAAGGCAAGGTCAAGTTCCTTTACAAGAAATGGGCA 1000
.|.|||.|||.||..|||||||..||||||.||.||.|||||||||||.|
BSU31860___yu 951 CAATGCTGAAAAGTTAAGGCAAAATCAAGTGCCATTGCAAGAAATGGGTA 1000
BSNT_04688___ 1001 TGAAAAAAATTCAAGAA-GATATGTTCAGTACATTTCTTGAACGTTATGA 1049
||||||||||| .|||| ||.|||||.|.|.|||||||....||.|||.|
BSU31860___yu 1001 TGAAAAAAATT-GAGAATGACATGTTTAATGCATTTCTATCTCGATATAA 1049
BSNT_04688___ 1050 AACTCAGTATACTGCAACTAAA-ATCCAAAACTTAAATCAATTGCAAGAT 1098
||.|||.|||...||.|.|||| || |||||.|||||||||||||||||.
BSU31860___yu 1050 AAGTCAATATGAAGCTATTAAATAT-CAAAATTTAAATCAATTGCAAGAG 1098
BSNT_04688___ 1099 AAGATAGTGAA------TCTTCGTCCGGCTTTAATAAAACCAGAGGAAGA 1142
||.||.|.||| .|||.| ||||.|.|||||..|||||..
BSU31860___yu 1099 AATATCGGGAAGAACCGCCTTAG------TTTACTTAAACCTAAGGAAAG 1142
BSNT_04688___ 1143 CGATCAAAAGCACGAT----AA--------TTCTAATGAAGAGAATAATG 1180
|||..|||||.|.||| || |..||||.||||..|.|..|
BSU31860___yu 1143 CGACGAAAAGGAAGATGGAGAAGACACATCTGATAATAAAGATGACACAG 1192
BSNT_04688___ 1181 ACAAGGAAGAAGATACAACTGAAGAAATCAAATTGGACTTGGAGCAACAA 1230
|.|||||||| .|.||||||.||.||||||||.||.|||.|.||.
BSU31860___yu 1193 ATAAGGAAGA------TATTGAAGATATAAAATTGGATTTAGAGAAGCAG 1236
BSNT_04688___ 1231 CGAGATGAACTCAATAATGTTGCAGCTGAAATCAAAGATATTTCTGAAGG 1280
||.|||||.|||||.|||||||||.|||||||.||||||||.||||||||
BSU31860___yu 1237 CGGGATGAGCTCAAAAATGTTGCAACTGAAATTAAAGATATCTCTGAAGG 1286
BSNT_04688___ 1281 ATTAAAAGAACCAGAACTAAATAACCCAACAATGCCGGGGA-GC-GAAGA 1328
.|||||||||||.||||.|.|.||.|||||||..|| .|| || |||||
BSU31860___yu 1287 GTTAAAAGAACCTGAACAAGAAAAACCAACAACACC--CGATGCTGAAGA 1334
BSNT_04688___ 1329 CCCGACAAACGACGA----CAACACCAAT---------------AATAAA 1359
.||..|||.|||.|| | |.||| |||.|.
BSU31860___yu 1335 ACCATCAACCGATGATTCTC----CTAATACTGAAGAACCGTCGAATGAT 1380
BSNT_04688___ 1360 AATCCAACAAGTGGCGATCAGCCGACAGATGGAAATGATGGGTCAACAGA 1409
|.|||||||...|..||||||||.|||.|||.|.||..|||.|||.||||
BSU31860___yu 1381 ATTCCAACATCCGATGATCAGCCAACAAATGAAGATACTGGCTCATCAGA 1430
BSNT_04688___ 1410 TGACAGTACACA----AATGAACCCTGAAAT--------AAATAA---TG 1444
.||..||||.|| ||||.|.|...|||| ||.||| ||
BSU31860___yu 1431 AGAGGGTACTCAAGATAATGGATCACAAAATGATGTTCAAACTAACATTG 1480
BSNT_04688___ 1445 AAGC-AGACAATCAAGGTCAACAAAATTCTTCCGAGAAAAC--TAATGAT 1491
||.| .|||||..| ||.|||.|.||||| |.||||| |..|||.
BSU31860___yu 1481 AAACGGGACAAAAA----CATCAAGAATCTTC--AAAAAACGTTCCTGAA 1524
BSNT_04688___ 1492 TTAAATGGCAAA-ACAGAGACGACAGCACAATCAAAAGCCG----CCCTT 1536
..|.|| .|||| ||.||||..||||.|...||.|||.|.| |.|||
BSU31860___yu 1525 CAAGAT-ACAAACACGGAGAATACAGGAACCTCTAAAACAGATTTCTCTT 1573
BSNT_04688___ 1537 CGTATAATTCAGCTCGCTGATGAAAACGATGGGTC--------------- 1571
|.|||.|.|||||.||||||||||||||.||
BSU31860___yu 1574 ----TGATTGAACTCGCAGATGAAAACGATGGCTCAAATCAAAGTGATGG 1619
BSNT_04688___ 1572 ---ACAGGTTGACGATTCTAAAAACGAATCAGATATTTC-GATAGCAAAA 1617
|||||.|||||...||.|....|||.|.|||||||| |.| ||||||
BSU31860___yu 1620 GCTACAGGGTGACGGAGCTGACGGTGAAACTGATATTTCAGGT-GCAAAA 1668
BSNT_04688___ 1618 AAACGTCTGAATGCTGCAGCTGA-ACAAATACAGAAAATAGAGGAAGAAC 1666
|||||||||||.|..||||| || |.||.||.||.|||||||..|.|.||
BSU31860___yu 1669 AAACGTCTGAACGAAGCAGC-GATAAAATTAGAGGAAATAGAAAATGCAC 1717
BSNT_04688___ 1667 TTAAAGAAAAGCAAGAGGAGCATAATAGTAAGGTTGAGAAGCGCATTGA- 1715
||.|||||||.||||||||.|||||.|..||..|.|||||.|..|||||
BSU31860___yu 1718 TTCAAGAAAAACAAGAGGAACATAACAACAAACTAGAGAAACATATTGAT 1767
BSNT_04688___ 1716 GA---AACTGGATAAAGAAATAAAAGATCTAAATGATAAGGTTGACTC-- 1760
|| || ||.|||||||.|||||..|||||.|.|..||| ||
BSU31860___yu 1768 GAGTTAA----ATCAAGAAATTAAAGAGTTAAATAAAACAGTT---TCAA 1810
BSNT_04688___ 1761 -ATTAAA-CATCAAAATTAATGACTTAACATCAAAATT------------ 1796
|||||| .||| |||||..||||||||||..|||.||
BSU31860___yu 1811 AATTAAATGATC-AAATTGGTGACTTAACAAAAAAGTTGGTTGATTTTGA 1859
BSNT_04688___ 1797 TAATGATATCAATGAT-----CAGTTTAATAAATCTTCTTTATTAATTAG 1841
||||.||.|||||||| .||.||||||.| .||||.|
BSU31860___yu 1860 TAATAATGTCAATGATGCTTATAGGTTAATATA----------CAATTTG 1899
BSNT_04688___ 1842 TGAAAAGGAAA-AAGAGATTTTAAAAATTTTACGGAATAACGGTGAAAAA 1890
|||.|.|||| || ||.|||.|||.|.||.||..||..|.|.|
BSU31860___yu 1900 -GAAGACGAAATAA-------TACAAACTTTGCAGAGTAGAGGCTATATA 1941
BSNT_04688___ 1891 GATCGCTTAGAACAATTATCTTCAGTTTTTACTAATACAGTAGATACAAA 1940
||||....||||.||.||..||||.|||||.|.|.||.|.|.||.||..|
BSU31860___yu 1942 GATCAGAAAGAAAAACTAAGTTCAATTTTTTCAAGTAGAATTGAAACTGA 1991
BSNT_04688___ 1941 AAATGTTTCAGACTTAATGAAGTACTACAATTATCTATATTTGTATGAAA 1990
.|||.||||..||||.||||||||.|||||.|.|.||.||||.||| |
BSU31860___yu 1992 TAATATTTCTAACTTGATGAAGTATTACAACTCTTTAAATTTATAT---A 2038
BSNT_04688___ 1991 AG---ACTTTGACTGGTTCTCTAGATGTAGGGTCTATGTCGCTCTT---- 2033
|| ||..|.|.||.|..|||.|||.||||.|||.|| .||.||
BSU31860___yu 2039 AGTCTACGCTAAATGATAATCTGGATCTAGGCTCTTTG--ACTATTATTA 2086
BSNT_04688___ 2034 AAGTAGAGACGCTATCC-AGGGCCAGCAGGGCAACGTCAAATCCATCCTG 2082
||| |.||.|..|||| ||.||.|| |.|||||||||.||||..|||||
BSU31860___yu 2087 AAG--GTGAAGTCATCCAAGAGCAAG-ATGGCAACGTCCAATCAGTCCTG 2133
BSNT_04688___ 2083 GCCCTCTCACCTGCAGAATCAGCCAGCTGGGAAGCTCTCAAAAACAACAC 2132
||.|||.||||||.||||||||||||||||||||||||||||||||||||
BSU31860___yu 2134 GCTCTCACACCTGAAGAATCAGCCAGCTGGGAAGCTCTCAAAAACAACAC 2183
BSNT_04688___ 2133 GATGCAAACTGATGAAGACATTAACAGCTTCATCGACGGAATGACCAAAT 2182
|||||||||.|||||.||.||||||||||||||||||||.||||||||||
BSU31860___yu 2184 GATGCAAACAGATGAGGATATTAACAGCTTCATCGACGGCATGACCAAAT 2233
BSNT_04688___ 2183 TTGCGGGTGACTACAGCGGCTTTATTCGTGACTCTCAAGCAGGTGTTCTC 2232
||||||..|||||||||||||.|||.||||||||||||||||||||||||
BSU31860___yu 2234 TTGCGGACGACTACAGCGGCTATATCCGTGACTCTCAAGCAGGTGTTCTC 2283
BSNT_04688___ 2233 GACGAACTGACGAAAATCTCTGAAAGTGCCGCAAAAGCGTCAGAACAGCT 2282
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 2284 GACGAACTGACGAAAATCTCTGAAAGTGCCGCAAAAGCGTCAGAACAGCT 2333
BSNT_04688___ 2283 TGTAACGGGCGCAACACAGGAATCTGCGACGTTCAGCAACGATGGGCTGT 2332
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 2334 TGTAACGGGCGCAACACAGGAATCTGCGACGTTCAGCAACGATGGGCTGT 2383
BSNT_04688___ 2333 CTGGCACCATGGCACTGAGTGTCCAAGATACGGTCGGCCAGGAAGTGCTG 2382
||||.|||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 2384 CTGGTACCATGGCACTGAGTGTCCAAGATACGGTCGGCCAGGAAGTGCTG 2433
BSNT_04688___ 2383 CAAATGTCAGACATGATGGGTTCATTGTCTGATCGCCAGTCAGGCATCAT 2432
|||||||||||||||||||||||||||||||||||||||||.||||||||
BSU31860___yu 2434 CAAATGTCAGACATGATGGGTTCATTGTCTGATCGCCAGTCCGGCATCAT 2483
BSNT_04688___ 2433 TGATTACACAACCAACATGCAGCAAAGCGTCAATGATGTTCAAGCGAAAG 2482
||||||||||||||||||||||||||||||.|||||||||||||||||||
BSU31860___yu 2484 TGATTACACAACCAACATGCAGCAAAGCGTTAATGATGTTCAAGCGAAAG 2533
BSNT_04688___ 2483 CCGACACCTTAAACAACAACTGGGGGAAAAATGTCGCCTCCACGAAACTA 2532
|||||||||||||||||||||||||||||||||||||||||||||||||.
BSU31860___yu 2534 CCGACACCTTAAACAACAACTGGGGGAAAAATGTCGCCTCCACGAAACTC 2583
BSNT_04688___ 2533 GTGCGCAATGACGTATACGGCATACTCGGAAACACATTAGTAGACGGGCA 2582
|||||.||||||||||||||||||||||||||.|||||||||||||||||
BSU31860___yu 2584 GTGCGAAATGACGTATACGGCATACTCGGAAATACATTAGTAGACGGGCA 2633
BSNT_04688___ 2583 AAACAATGGCTATGTATATGATTACTTGGCGAATCCGCTTAAAATCAGCG 2632
|||||||||||||||||||||||||||.||||||||||||||||||||||
BSU31860___yu 2634 AAACAATGGCTATGTATATGATTACTTAGCGAATCCGCTTAAAATCAGCG 2683
BSNT_04688___ 2633 GAGAGGTTCCGGAAGAAAAAATTCAGACGGTACCTCCGGTTGTCATCCTT 2682
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 2684 GAGAGGTTCCGGAAGAAAAAATTCAGACGGTACCTCCGGTTGTCATCCTT 2733
BSNT_04688___ 2683 GTCATTGTGTTGATCAGCAGTCTGTTAATCGGCTATTTCAGCTCGTATTA 2732
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 2734 GTCATTGTGTTGATCAGCAGTCTGTTAATCGGCTATTTCAGCTCGTATTA 2783
BSNT_04688___ 2733 CCAAAACGCACCGCTTCTCGTCAAAGGAGCGTTATTCGGAATTCTGAATA 2782
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 2784 CCAAAACGCACCGCTTCTCGTCAAAGGAGCGTTATTCGGAATTCTGAATA 2833
BSNT_04688___ 2783 TCCTTGTCGGACTTATGATCAGCTTGTTCGGTTTGAATATTTATTCACTG 2832
|||||||||||||||||||||||||||||||.||||||||||||||||||
BSU31860___yu 2834 TCCTTGTCGGACTTATGATCAGCTTGTTCGGCTTGAATATTTATTCACTG 2883
BSNT_04688___ 2833 CCGGACGATCAGACGATTAAGTGGTCGGTGTTTACGATTCTATTGCTGGT 2882
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 2884 CCGGACGATCAGACGATTAAGTGGTCGGTGTTTACGATTCTATTGCTGGT 2933
BSNT_04688___ 2883 CGCAAGCTCTGCCTTCATCCGGACGGCATTCAGATTCGGATCAATCCCTG 2932
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 2934 CGCAAGCTCTGCCTTCATCCGGACGGCATTCAGATTCGGATCAATCCCTG 2983
BSNT_04688___ 2933 GCTGGGTTGCTTCAGCAGCAATGATCCTATTCTATGTCGCACCGCTTATT 2982
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 2984 GCTGGGTTGCTTCAGCAGCAATGATCCTATTCTATGTCGCACCGCTTATT 3033
BSNT_04688___ 2983 GATTTGATCATGCCGAACTTTACATTTGAAGATCCGGTTTCGAAAGTATA 3032
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 3034 GATTTGATCATGCCGAACTTTACATTTGAAGATCCGGTTTCGAAAGTATA 3083
BSNT_04688___ 3033 TATCGACATCCAGTACGGTACTGGGCACTTGTTTACAATGGGAATAACAG 3082
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 3084 TATCGACATCCAGTACGGTACTGGGCACTTGTTTACAATGGGAATAACAG 3133
BSNT_04688___ 3083 TTCTGCTGATCATTACGGTGATTGCCGTGGCTCTGCCGCTGATTATCCGG 3132
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 3134 TTCTGCTGATCATTACGGTGATTGCCGTGGCTCTGCCGCTGATTATCCGG 3183
BSNT_04688___ 3133 TTGATGGCTGAACACACAGCAGAAAGCGATGAAACGTATGAAGCGTGA 3180
||||||||||||||||||||||||||||||||||||||||||||||||
BSU31860___yu 3184 TTGATGGCTGAACACACAGCAGAAAGCGATGAAACGTATGAAGCGTGA 3231
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