Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04666 and BSU31710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:35
# Commandline: needle
# -asequence dna-align/BSNT_04666___comQ.1.22522.seq
# -bsequence dna-align/BSU31710___comQ.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04666___comQ-BSU31710___comQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04666___comQ-BSU31710___comQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04666___comQ
# 2: BSU31710___comQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1041
# Identity: 561/1041 (53.9%)
# Similarity: 561/1041 (53.9%)
# Gaps: 318/1041 (30.5%)
# Score: 1349.5
#
#
#=======================================
BSNT_04666___ 1 ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGA------------ 38
|||||||||||||||||..||||.||.||.||.|||||
BSU31710___co 1 ATGAAGGAGATTGTGGAGCAAAACATATTTAACGAGGATTTGTCACAACT 50
BSNT_04666___ 39 -CTTAAAAGTGAAGCTCATTTCTT--TTATCAAAGAAAAAAAACAATTTT 85
|||.| |||||||.|| ||.| ||||||| .|||.|
BSU31710___co 51 TCTTTA--------CTCATTTATTGATTCT-AAAGAAA------CATTCT 85
BSNT_04666___ 86 CATTTGCAGA----ACTGGCTTATTACCATTACATAGCATTTGATGGAAA 131
|.|||||.|| ||...|||| |||||..|.|..||||..||..|
BSU31710___co 86 CCTTTGCTGAATCCACAATCTTA----CATTATGTTGTTTTTGGAGGGGA 131
BSNT_04666___ 132 AAA-----------CGACAAAGCAATTGAGTTATTGGCGTCAGGTATAGA 170
.|| |.||||.|| |||||| |.||.|||||
BSU31710___co 132 GAATTTAGATGTTGCAACAAGGC----------TTGGCG-CGGGAATAGA 170
BSNT_04666___ 171 ACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACA 220
|.||.|.|||.|.||..|.||.|||.|.||.|||.||||.|||.|.||.|
BSU31710___co 171 AATTCTTATTCTTTCATCAGATATTATGGATGATCTTGAAGATGAAGATA 220
BSNT_04666___ 221 ATCTTCAGGCTTCTTGGATG-AAATTAGATC-CT-----TCTATAGCAAC 263
|||..||.||.|..|||||| |||||| ||| || ||..||
BSU31710___co 221 ATCACCATGCATTATGGATGAAAATTA-ATCGCTCGGAGTCGTTA----- 264
BSNT_04666___ 264 TAACGCAGCTACCGCACTT------TATAC------ATTAAGTCTGCAAG 301
||.||| |||||| ||||| ||||| |.||
BSU31710___co 265 -AATGCA------GCACTTTCCTTGTATACAGTAGGATTAA-----CGAG 302
BSNT_04666___ 302 TAATAGGTTCAGTC-TCAAATCATCCAA------AACTTTTAAGCCTTAC 344
|| ||.|.|| |.||||.| ||| ||.|||||| .||.
BSU31710___co 303 TA-----TTTATTCATTAAATAA--CAATCCTCTAATTTTTAA---ATAT 342
BSNT_04666___ 345 TTTGCAATATTC-------ACTCCAATCTTTACAAGGACAACATGTAGAT 387
.||..||.||.| |..||| |.|||||.|||||||..|||
BSU31710___co 343 GTTTTAAAATACGTAAACGAGGCCA-----TGCAAGGTCAACATGACGAT 387
BSNT_04666___ 388 -------TTGAATTTAACAGCCTCATCAGA--ATCAGAGTATATTGAAAT 428
.|.|||.||| |.|||| ||.|.|||.|| |||.|
BSU31710___co 388 ATCACTAATAAATCTAA-------AACAGAAGATGAAAGTTTA--GAAGT 428
BSNT_04666___ 429 GATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCC----------AGT 468
.||||.|.|.||.|..||...|||| |||||.| ||.
BSU31710___co 429 AATTAGATTAAAATGTGGAAGTCTG-----ATTGCACTAGCAAATGTAGC 473
BSNT_04666___ 469 ATTCTTGGTG-TATATCTGGCAACTGGAGAATATAATGAAACAGTTGAGG 517
| |||| |.||| ||||.||.||||||||||||||||||||||| .
BSU31710___co 474 A-----GGTGTTTTAT-TGGCTACAGGAGAATATAATGAAACAGTTGA-A 516
BSNT_04666___ 518 AG-TATTC--ACGTTATTTAGG---TATAG-TCGAGCAAATTGCAAATGA 560
|| ||||| || |||..||| ||||| | ||||||.|....||
BSU31710___co 517 AGATATTCCTAC--TATAAAGGGATTATAGCT----CAAATTTCTGGAGA 560
BSNT_04666___ 561 TCACTATGGACTTTATTA-CCCTAACT-------ATAATGACTTCAAAAC 602
|.|.||||..||| ||| ||..||.| |||.||| .||||.
BSU31710___co 561 TTATTATGTTCTT--TTATCCGGAAATCGCAGTGATATTGA---AAAAAA 605
BSNT_04666___ 603 TAGACATAC---GCTTGCCTTCAATTATCTTAA---------AAAT---- 636
.|.|||||| |.||..||| .|||||||| .|||
BSU31710___co 606 CAAACATACACTGATTTACTT---ATATCTTAAGCGCCTTTTTAATGATG 652
BSNT_04666___ 637 -------AAATTTA----AC-CAAT----CATCAATTGACTTATTAAATT 670
|.||||| || .||| |||.|| |||||| |
BSU31710___co 653 CTTCGGAAGATTTATTATACTTAATTTCACATAAA--GACTTA------T 694
BSNT_04666___ 671 TTTATGCGCAAGAAAATC---ATATGATAAATAATTTGGAAGATTTGAAG 717
.|||| ||||| |..|||||||.| ||| |||..||
BSU31710___co 695 ATTAT--------AAATCGTTACTTGATAAAGA-----GAA-ATTCCAA- 729
BSNT_04666___ 718 GGAAAGTTAAGAGAATCAGGTGT-----AATAC--------AATATTTGA 754
|.|||.||||...||.|.||.|| ||||| |.||||.||
BSU31710___co 730 GAAAAATTAATTAAAGCGGGAGTTACTCAATACATTTCGGTATTATTGGA 779
BSNT_04666___ 755 ATGTTATAAAAAATTTAGCAGTGGAAA---ATTT----TAAGGAATCATT 797
|...||||||.| |||| |||| ||..|||..|||
BSU31710___co 780 AATATATAAACA-----------GAAATGTATTTCTGCTATAGAACAATT 818
BSNT_04666___ 798 CAAAAAACTGAGATTAGATGAACAAAGAAAA-----AATAA---ATTACT 839
.|| .||||||.||.|||.|||| ||||| |.|.||
BSU31710___co 819 AAA---------TTTAGATAAAGAAAAAAAAGAGCTAATAAAGGAATGCT 859
BSNT_04666___ 840 TATTCAATTAT--TAAGGGGGATTTAA-------------- 864
||||.|.|||| .|||||||||..||
BSU31710___co 860 TATTAAGTTATACAAAGGGGGATACAAGATGCAAGACCTAA 900
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