Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04664 and BSU31690

See Amino acid alignment / Visit BSNT_04664 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:35
# Commandline: needle
#    -asequence dna-align/BSNT_04664___comP.1.22522.seq
#    -bsequence dna-align/BSU31690___comP.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04664___comP-BSU31690___comP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04664___comP-BSU31690___comP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04664___comP
# 2: BSU31690___comP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2546
# Identity:    1683/2546 (66.1%)
# Similarity:  1683/2546 (66.1%)
# Gaps:         469/2546 (18.4%)
# Score: 5646.5
# 
#
#=======================================

BSNT_04664___      1 ---ATGTACAGATATATTAACGTCTATAAATATTTGTCTC--TAGTTTTT     45
                        |.|.||       ||||    ||.|||.||   ||.|  |||.|.|.
BSU31690___co      1 TTGAAGAAC-------TTAA----TAAAAAAAT---TCACAATAGCTGTA     36

BSNT_04664___     46 ATCATTTTAAGT----TTTATTTATGTTATATACCTCTCGTATAGC--TT     89
                     ||..||||.|||    |||||.||.|.||||.|.||    ||||.|  |.
BSU31690___co     37 ATTGTTTTGAGTATCCTTTATATAAGCTATACAACT----TATATCAGTA     82

BSNT_04664___     90 TGCTT----TTAACATCTTCGTAGGTGCGGA-TGTAAAGATAAATGAACA    134
                     ||..|    |||..||         || ||| |   |||||..||.||.|
BSU31690___co     83 TGAATGGAATTATTAT---------TG-GGACT---AAGATTCATAAAAA    119

BSNT_04664___    135 GGGTAAGTTAGAGGTCACCAATGTTTTAGATTAT-ACAGATG-AATAT--    180
                     .|.|||     |.||   ||||        |||| |.|||.| |||||  
BSU31690___co    120 TGATAA-----AAGT---CAAT--------TTATGATAGAAGAAATATCG    153

BSNT_04664___    181 ---TATTCAT---------------GTGTGAAAAAGGGAGATATCA----    208
                        |.|||||               ||.|||.|.|||||||.||||    
BSU31690___co    154 GAATCTTCATATGGACAATTTGTTGGTCTGAGACAGGGAGACATCATATT    203

BSNT_04664___    209 ---------------------TTC----------TTGAAGTAAATGGGGA    227
                                          |||          |||    |||||||||
BSU31690___co    204 AAAAATTAATAAAGAAAAACCTTCAGACAAACATTTG----AAATGGGGA    249

BSNT_04664___    228 GA-------------AAGGCAGT---GATATTCAATTAAAAAGTGGAAGA    261
                     .|             ||  ||||   ||||||   ||.|.|||||||   
BSU31690___co    250 TATTTGAGTCATATTAA--CAGTCTGGATATT---TTGAGAAGTGGA---    291

BSNT_04664___    262 TTGGTCAATGTAGAAAGTTTAAT-TGTTGAGAGAGATAATAAATCATTTC    310
                                |.||||.||.|| |     .|.||||         |||.
BSU31690___co    292 -----------AAAAAGATTCATCT-----CAAAGAT---------TTTG    316

BSNT_04664___    311 ATTTA------CAAAATGTAAG-CCTAATCAGTGAAGAAAATTTATTTAT    353
                     |||||      |.||||   || |||.||          |.|||.|||.|
BSU31690___co    317 ATTTAGTTACTCTAAAT---AGACCTTAT----------AGTTTTTTTCT    353

BSNT_04664___    354 GTATC-TCATTCCTGTAATATCTTATTCAATCTGTTTATTTTGTA-----    397
                     || || |..|||||        ||.||     |.||||||||.||     
BSU31690___co    354 GT-TCGTACTTCCT--------TTGTT-----TTTTTATTTTTTAAGCAT    389

BSNT_04664___    398 ------TATTTTTTATTTA--TAGAATAAATAAAGTAAGAAAATCAACTT    439
                           ||||||||||.||  ||.|.||||||||..|||.|.||||..|.
BSU31690___co    390 AATATGTATTTTTTATATACTTAAAGTAAATAAAAAAAGGAGATCATTTG    439

BSNT_04664___    440 CTGCTTATATTTTAATTTTATTTTTGTTATTTG---TATCAGTAGCGTAT    486
                     ||||.||||||.|.|||.||   ||||||||.|   |.||..||||.|||
BSU31690___co    440 CTGCCTATATTCTTATTCTA---TTGTTATTAGACATTTCGATAGCATAT    486

BSNT_04664___    487 GTAAGTGCATGTGGAGCAAGAAGAGGTGAAGAGATAAGCACT-----TAT    531
                     .||||||||.|.|||.||...|||||   |.|.||||.||.|     |||
BSU31690___co    487 ATAAGTGCAGGCGGACCATTTAGAGG---ACATATAATCAATCGGTATAT    533

BSNT_04664___    532 CTGCTTGTTCTTACTTTAGTCAGTTGTCCGGTGTTATATATTCATTTTAT    581
                     ...|||||  |||||||..|...||.|||..|..|.|||.||||.|||||
BSU31690___co    534 TAACTTGT--TTACTTTTATATCTTCTCCTATTCTTTATCTTCAATTTAT    581

BSNT_04664___    582 ATATAAATACTTTATAGAATTAGGAACAAAGTTATTCGAAAAGAAGATTT    631
                     |.|.|.||||.||..||||.||||.| |||.||.||.|||.||||..|.|
BSU31690___co    582 ACAAAGATACCTTGGAGAAATAGGTA-AAACTTTTTTGAATAGAATTTCT    630

BSNT_04664___    632 TAATCATTATGTATATGCTCCCGCTAATAAATCTT-TTATTAGAGGACGT    680
                     |     ||.|.|||||..|.||..||.|.|||||| .|||          
BSU31690___co    631 T-----TTCTTTATATCATACCAATATTTAATCTTGGTAT----------    665

BSNT_04664___    681 TCTGAGTAAT----AGATTA---------AAATCTTCGGCTTTTTTGTCT    717
                       |||||..|    |||.||         |.||.||  |.||||||..|.
BSU31690___co    666 --TGAGTTTTTTCAAGACTATTTACAAGTAGATATT--GATTTTTTAGCA    711

BSNT_04664___    718 AATCTGAATTTGATTTCATTTTTTGTCCTAGTTCTTACTGTATCGATTCT    767
                     |.|||.||||||.||||   |||||  |.|.|| |.|||.|||  .||||
BSU31690___co    712 ACTCTTAATTTGGTTTC---TTTTG--CAACTT-TGACTCTAT--TTTCT    753

BSNT_04664___    768 TATCCATAAAGGGATA------------AGAAAATTTAAACAAAAAGAGC    805
                     |.|.|    ||.||||            |..||||.||||.|....||||
BSU31690___co    754 TTTTC----AGCGATATACTTACATCTTAATAAATATAAATATGCTGAGC    799

BSNT_04664___    806 AAAAGTCAATTTTGAAAGTCCTTGCTTAT----ACAAATA-TCTTTTCTT    850
                     |...||..|||.|.|||    ||.||.||    |||||.| |||||..||
BSU31690___co    800 ATTCGTTTATTCTTAAA----TTACTAATTTTAACAAACACTCTTTCATT    845

BSNT_04664___    851 TCAGTCCGTTTATTG-TCTTTTTTGCTGTTCC-ATATGTGTTTTTCGAG-    897
                     |  |..|.|||.||| |.|||||||.|.|||| |||   .|.|||..|| 
BSU31690___co    846 T--GCGCCTTTTTTGATATTTTTTGTTCTTCCAATA---ATATTTACAGG    890

BSNT_04664___    898 -AAGTATGTCT------CACCTTTTAG-TTTGGCTGCTTTTACACTTG--    937
                      ||.|||.|.|      ||    |||| ||.|||..|.||   |||.|  
BSU31690___co    891 TAATTATATTTTCCCGGCA----TTAGCTTCGGCGTCATT---ACTAGTA    933

BSNT_04664___    938 -TTATACCTTTTTCTTTAGTATATCAATTTATGACTAAT-AGACTTTATA    985
                      |.||.||.||....||||||||.||||||.|..|.||| ||| |.|.|.
BSU31690___co    934 CTAATTCCGTTCGGGTTAGTATACCAATTTGTAGCCAATAAGA-TGTTTG    982

BSNT_04664___    986 ATATCGACTTTGTTGTGGGGCGGCTTAAG-------TACTACGGTTTTTT   1028
                     ||||.||.|||.|..|.||       |||       |||||.|.|.|..|
BSU31690___co    983 ATATAGAGTTTATCTTAGG-------AAGAATGAGATACTATGCTCTACT   1025

BSNT_04664___   1029 AGCCATTACACCTACTATTATCGTAGT--GACCAT------------CTT   1064
                     .|||||.|.|||.|||.||.|..||||  |..|||            .|.
BSU31690___co   1026 TGCCATGATACCAACTCTTCTAATAGTTGGTGCATTAGTTCTGTTTGATG   1075

BSNT_04664___   1065 TAAT-TACATTCAG--CAAC---------CAAAGGATATCTTTTATTTAG   1102
                     |||| .||||.|||  .|||         ||||...|||.||||      
BSU31690___co   1076 TAATGGACATCCAGATGAACCCTGTGCGTCAAACTGTATTTTTT------   1119

BSNT_04664___   1103 TTAAACTAACAATTGCAATATATGTTCTTATGTTTGCCGTTTTTTACTTT   1152
                                         |..|||.|.|||||.||.||.|||||.|||
BSU31690___co   1120 --------------------TTCGTTGTCATGTTCGCTGTCTTTTATTTT   1149

BSNT_04664___   1153 AAAGAAATCATTGATTTT-CGTTTCAAGTTGAAAAGATTTACAGAGAAAT   1201
                     |||||..||||.|||||| ..|||| .|||.|||.|.||..|.||.||||
BSU31690___co   1150 AAAGAGGTCATGGATTTTAAATTTC-GGTTAAAACGTTTCTCCGAAAAAT   1198

BSNT_04664___   1202 TTAATTATCAAGATGGGATTTTTAAATTTACTCAGTTGATTAAGCAAGCA   1251
                     |.||.|||||.||..|.||||||||||.|||||||.|.||.|.|...|.|
BSU31690___co   1199 TCAACTATCAGGACAGTATTTTTAAATATACTCAGCTAATGAGGGGTGTA   1248

BSNT_04664___   1252 TCATCAGTAGATCAAGTACTTAATCACTTTAAAAATACAATCCTAGAAGT   1301
                     .|.||..|..|.|||||..||||..|..|.||||||||.||.||.||.||
BSU31690___co   1249 ACTTCTCTTCAACAAGTTTTTAAAGAACTGAAAAATACTATACTGGATGT   1298

BSNT_04664___   1302 AT------TAAACATAGATAATGC--TTGCGTGTA----TGATAATTCTA   1339
                     .|      |||.||.||.|.||.|  |||.|..||    |||    ||..
BSU31690___co   1299 TTTGCTTGTAAGCAAAGCTTATACCTTTGAGGTTACTCCTGA----TCAC   1344

BSNT_04664___   1340 AAGGGGAAATCACCCTTCTTAG-TAAGAACAACTTTAAAGAT--------   1380
                     ||.|.||.|      ||.|||| ||||.|      |.|||.|        
BSU31690___co   1345 AAAGTGATA------TTTTTAGATAAGCA------TGAAGTTGGACCGGA   1382

BSNT_04664___   1381 CTG--ACTTATAAAAATCATGAGCAATATGTGAAAAATTTTTCTGGTGAT   1428
                     |||  |.||.|    ||||.|||.|||.||   ||||..|..||...||.
BSU31690___co   1383 CTGGAATTTTT----ATCAAGAGGAATTTG---AAAACGTAACTTCAGAA   1425

BSNT_04664___   1429 ATCGGTAAAATTAAAGAGTTTAAACAAGGTTTTATTATTAAAATAGGTGA   1478
                     ||.||.|||||||.|||..|.||.|||||.|||.||||.|||.|.|||||
BSU31690___co   1426 ATTGGGAAAATTATAGAAGTCAATCAAGGCTTTCTTATGAAAGTTGGTGA   1475

BSNT_04664___   1479 ACGAGGAGACAGATCATTTTTAGTACTCTGTTTCTCAAGTTATAATACTT   1528
                     ||||||.|..||.||.|.|.|..|.||.|||||.||      |||||   
BSU31690___co   1476 ACGAGGCGGTAGTTCTTATGTTCTGCTTTGTTTATC------TAATA---   1516

BSNT_04664___   1529 TTAA---------GTTAACAAGGGATGAAATTGCATGGCTTCAAACATTA   1569
                     ||||         |.|||||.|.||||||||..|.|||||..|||||.|.
BSU31690___co   1517 TTAACACTCCCCGGCTAACACGTGATGAAATATCGTGGCTGAAAACACTG   1566

BSNT_04664___   1570 GCATTTTATACAAATGTCTCATTGGAAAACGTTATGAAAATCGAAGAATT   1619
                     .|.||||||||||.|||.||..|||||||.||..||.|.||.||.||..|
BSU31690___co   1567 TCTTTTTATACAAGTGTGTCCATGGAAAATGTCCTGCATATTGAGGAGCT   1616

BSNT_04664___   1620 GATGGTGCATCTTG-AGGATTTAAAACAACAAGAATCCAACCCCGTATGG   1668
                     .||||..||| ||| ||||.|||||||||.|.|.|.||||||||.|.|||
BSU31690___co   1617 CATGGAACAT-TTGAAGGACTTAAAACAAGAGGGAACCAACCCCATCTGG   1665

BSNT_04664___   1669 CTCAAAAAACTCATGTACACGATCGAGGAAAAACAACGCTC-GGATCTCG   1717
                     ||.|||||.||.||||...|.|||||.||||||||.||.|| ||| ||||
BSU31690___co   1666 CTGAAAAAGCTAATGTTTGCAATCGAAGAAAAACAGCGTTCAGGA-CTCG   1714

BSNT_04664___   1718 CCCGCGATCTCCACGATTCGGTTCTTCAGGATTTGATTTCCTTAAAACGC   1767
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co   1715 CCCGCGATCTCCACGATTCGGTTCTTCAGGATTTGATTTCCTTAAAACGC   1764

BSNT_04664___   1768 CAGTGTGAGCTGTTTTTGGGTGATTTTAAGAAGGGTGATAATCCGTGCCG   1817
                     ||||||||||||||||||||||||||.|||||||.|||||||||||||||
BSU31690___co   1765 CAGTGTGAGCTGTTTTTGGGTGATTTCAAGAAGGATGATAATCCGTGCCG   1814

BSNT_04664___   1818 TGAAGAGGTGCAGGACAAGCTTGTACAGATGAATGAGCAGATGTCTGATG   1867
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co   1815 TGAAGAGGTGCAGGACAAGCTTGTACAGATGAATGAGCAGATGTCTGATG   1864

BSNT_04664___   1868 TGATTTCGATGACGAGGGAGACGTGTCATGAGCTGCGGCCGCAGCTTCTG   1917
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co   1865 TGATTTCGATGACGAGGGAGACGTGTCATGAGCTGCGGCCGCAGCTTCTG   1914

BSNT_04664___   1918 TATGATCTTGGGCTGGTCAAGGCGCTGTCGAAGCTGGTGGCGCAGCAGCA   1967
                     |||||||||||..||||.||||||||||||||||||||||||||||||||
BSU31690___co   1915 TATGATCTTGGATTGGTGAAGGCGCTGTCGAAGCTGGTGGCGCAGCAGCA   1964

BSNT_04664___   1968 GGAGCGGGTTCCGTTTCATATCCGTTTAAATACCGGGAGATTTACGGCTT   2017
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co   1965 GGAGCGGGTTCCGTTTCATATCCGTTTAAATACCGGGAGATTTACGGCTT   2014

BSNT_04664___   2018 CCCTTGATCTGGATTCGCAGCTGAATTTGTACCGGATCATTCAAGAGTTT   2067
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co   2015 CCCTTGATCTGGATTCGCAGCTGAATTTGTACCGGATCATTCAAGAGTTT   2064

BSNT_04664___   2068 CTGTCTAATGCGGTCAAGCACTCTCAGGCGACGGATGTGCTGATTATGCT   2117
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co   2065 CTGTCTAATGCGGTCAAGCACTCTCAGGCGACGGATGTGCTGATTATGCT   2114

BSNT_04664___   2118 CATCAGTATTCAAAACAAAATCGTTCTTCATTATGAGGATGATGGCGTAG   2167
                     |||||||||||||||||||||||||||||||||||||||.||||||||.|
BSU31690___co   2115 CATCAGTATTCAAAACAAAATCGTTCTTCATTATGAGGACGATGGCGTTG   2164

BSNT_04664___   2168 GATTTGATCAGGAAAAGAATACTGAGCATTCCATGAGCATGGGGCTTTCT   2217
                     |.||||||||.|||||.|||||||||||||||||||||||||||||||||
BSU31690___co   2165 GGTTTGATCAAGAAAAAAATACTGAGCATTCCATGAGCATGGGGCTTTCT   2214

BSNT_04664___   2218 GGCATTAAGGAGAGAGTCAGGGCTTTAGATGGGCGCCTTCGGATTGAAAC   2267
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co   2215 GGCATTAAGGAGAGAGTCAGGGCTTTAGATGGGCGCCTTCGGATTGAAAC   2264

BSNT_04664___   2268 AAGTGAAGGAAAGGGCTTTAAGGCTGATATTGAAATCGAATTGTAA   2313
                     ||||||||||||||||||||||||||||||||||||||||||||||
BSU31690___co   2265 AAGTGAAGGAAAGGGCTTTAAGGCTGATATTGAAATCGAATTGTAA   2310


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