Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04406 and BSU30260

See Amino acid alignment / Visit BSNT_04406 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:06
# Commandline: needle
#    -asequence dna-align/BSNT_04406___msmR.1.22522.seq
#    -bsequence dna-align/BSU30260___msmR.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04406___msmR-BSU30260___msmR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04406___msmR-BSU30260___msmR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04406___msmR
# 2: BSU30260___msmR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1035
# Identity:    1017/1035 (98.3%)
# Similarity:  1017/1035 (98.3%)
# Gaps:           0/1035 ( 0.0%)
# Score: 5013.0
# 
#
#=======================================

BSNT_04406___      1 ATGGTTCGTATTAAAGATATCGCCTTGAAAGCTAAAGTTTCCAGCGCAAC     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30260___ms      1 ATGGTTCGTATTAAAGATATCGCCTTGAAAGCTAAAGTTTCCAGCGCAAC     50

BSNT_04406___     51 TGTGTCCAGAATTTTAAATGAAGATGAGTCGCTTTCTGTTGCGGGCGAAA    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30260___ms     51 TGTGTCCAGAATTTTAAATGAAGATGAGTCGCTTTCTGTTGCGGGCGAAA    100

BSNT_04406___    101 CGAGACAAAGAGTCATCAACATCGCTGAAGAGCTTGGTTATCAAACCGTT    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30260___ms    101 CGAGACAAAGAGTCATCAACATCGCTGAAGAGCTTGGTTATCAAACCGTT    150

BSNT_04406___    151 GCCAAACGCCGAAAATCCCGCGGGCAAAAACAGCGGGCTCAGCCGCTGAT    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30260___ms    151 GCCAAACGCCGAAAATCCCGCGGGCAAAAACAGCGGGCTCAGCCGCTGAT    200

BSNT_04406___    201 CGGTGTGCTGAGCTGTCTGTCCCCTGATCAGGAAAGGCAGGACCCTTATT    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30260___ms    201 CGGTGTGCTGAGCTGTCTGTCCCCTGATCAGGAAAGGCAGGACCCTTATT    250

BSNT_04406___    251 TTTCTTCCATTCGGAAAGGGATTGAAAAGGAATGCTTTGAACAGGAAATT    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30260___ms    251 TTTCTTCCATTCGGAAAGGGATTGAAAAGGAATGCTTTGAACAGGAAATT    300

BSNT_04406___    301 TTCATTACAAATTCGATTCATCTCGGCTCCTTTCAGGAACATATCTTTCG    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30260___ms    301 TTCATTACAAATTCGATTCATCTCGGCTCCTTTCAGGAACATATCTTTCG    350

BSNT_04406___    351 GGAATTGGATGGTGTCATTGTCATCGGCCGTGTTCATGATGAAGCGGTTA    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30260___ms    351 GGAATTGGATGGTGTCATTGTCATCGGCCGTGTTCATGATGAAGCGGTTA    400

BSNT_04406___    401 AGCATATAAGCGGAAGGCTTGAGCATGCCGTATTTATCAATCATTCACCA    450
                     |||||||.|||||.|||||.||||||||||||||||||||||||||||||
BSU30260___ms    401 AGCATATCAGCGGGAGGCTGGAGCATGCCGTATTTATCAATCATTCACCA    450

BSNT_04406___    451 GATCCGAAAGCATACGATTCGATTGGAATCGATTTTAAATCGGCTTCACG    500
                     ||||||.|||||||||||||||||||.|||||||||.|||||||||||||
BSU30260___ms    451 GATCCGCAAGCATACGATTCGATTGGCATCGATTTTGAATCGGCTTCACG    500

BSNT_04406___    501 CCAAGCGATTGATCACCTTTTTGACTTAGGCTACAAACGGTTAGGCTACA    550
                     |||.|||||||||||||||||.||||||||||||||||||||||||||||
BSU30260___ms    501 CCAGGCGATTGATCACCTTTTCGACTTAGGCTACAAACGGTTAGGCTACA    550

BSNT_04406___    551 TTGGCGGACAAGAAAAGGAGCATACGCTGAAGGACGGCCAAAGCATTCGC    600
                     ||||||||||||||||.|||||||||||||||||||||||||||||||||
BSU30260___ms    551 TTGGCGGACAAGAAAAAGAGCATACGCTGAAGGACGGCCAAAGCATTCGC    600

BSNT_04406___    601 AGAACGATTGAAGACAAACGCCTGACCGCTTTTTTGGAGTCAGCCGCCCC    650
                     ||||||||||||||.|||||||||||||||||||||||||||||||||||
BSU30260___ms    601 AGAACGATTGAAGATAAACGCCTGACCGCTTTTTTGGAGTCAGCCGCCCC    650

BSNT_04406___    651 CCAGCCTGAGCATGTGCTGATCGGAGAATACAGCATGCGTGAGGGCTATC    700
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30260___ms    651 CCAGCCTGAGCATGTGCTGATCGGAGAATACAGCATGCGTGAGGGCTATC    700

BSNT_04406___    701 GCCTGATGAAGAAAGCAATTGATCAAGGCCATCTGCCGGAAGCATTCTTT    750
                     |||||||||||||||||||.||||||||||||||||||||||||||||||
BSU30260___ms    701 GCCTGATGAAGAAAGCAATCGATCAAGGCCATCTGCCGGAAGCATTCTTT    750

BSNT_04406___    751 ATTGCCAGCGATTCTATGGCGATCGGCGCATTAAAAGCGCTGCAGGAAGC    800
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30260___ms    751 ATTGCCAGCGATTCTATGGCGATCGGCGCATTAAAAGCGCTGCAGGAAGC    800

BSNT_04406___    801 CGGACTGCAAGTGCCGCGGGATACTGCAATCGTCAGCTTTAACGGCATTG    850
                     ||||||||||||||||||||||||.|||||||||||||||||||||||||
BSU30260___ms    801 CGGACTGCAAGTGCCGCGGGATACCGCAATCGTCAGCTTTAACGGCATTG    850

BSNT_04406___    851 AGGAAGCTGAATTTGCCAGCACGCCTTTAACGACGGTGAAGGTATACACA    900
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30260___ms    851 AGGAAGCTGAATTTGCCAGCACGCCTTTAACGACGGTGAAGGTATACACA    900

BSNT_04406___    901 GAGGAAATGGGCCGGACAGGCGTAAAACTGCTGCTTGACCGTCTCAATGG    950
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU30260___ms    901 GAGGAAATGGGCCGGACAGGCGTAAAACTGCTGCTTGACCGTCTCAATGG    950

BSNT_04406___    951 CCGTACGCTTCCCCACCAAGTCACCCTGCCAACAAGATTAATCGTAAGAC   1000
                     |||.||||||||.||.||.|||||||||||.||||.||||||||||||||
BSU30260___ms    951 CCGAACGCTTCCTCAACATGTCACCCTGCCTACAACATTAATCGTAAGAC   1000

BSNT_04406___   1001 AAAGCTGCGGATGTACAGCAAAGGAGGTGACATAA   1035
                     |||||||||||||||||||||||||||||||||||
BSU30260___ms   1001 AAAGCTGCGGATGTACAGCAAAGGAGGTGACATAA   1035


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04406 and BSU30260

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
