Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04002 and BSU27580

See Amino acid alignment / Visit BSNT_04002 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:14
# Commandline: needle
#    -asequence dna-align/BSNT_04002___yrvJ.1.22522.seq
#    -bsequence dna-align/BSU27580___yrvJ.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04002___yrvJ-BSU27580___yrvJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04002___yrvJ-BSU27580___yrvJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04002___yrvJ
# 2: BSU27580___yrvJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1686
# Identity:    1549/1686 (91.9%)
# Similarity:  1549/1686 (91.9%)
# Gaps:         129/1686 ( 7.7%)
# Score: 7713.0
# 
#
#=======================================

BSNT_04002___      1 TTGCACACCTTTTTGATTGTATTTACGCTTAGTATAAACAAATCATTTTA     50
                                                                       
BSU27580___yr      0 --------------------------------------------------      0

BSNT_04002___     51 TTTTTATTTAAAAATCAGAAAGGACTTTACGATATTAAACAAGAATGCTT    100
                                                                       
BSU27580___yr      0 --------------------------------------------------      0

BSNT_04002___    101 TTTTAATGATCATCAGAAAGGAGGACACAATGAACAAGAAATACTTTGTC    150
                                                  |||||||||||||||||||||
BSU27580___yr      1 -----------------------------ATGAACAAGAAATACTTTGTC     21

BSNT_04002___    151 CTTATTGTATGTATTATTTTCACCGCAGCGCTATTCCCGACCTTTTCATC    200
                     ||||||||||||||||||||||||.|||||||||||||||||||||||||
BSU27580___yr     22 CTTATTGTATGTATTATTTTCACCTCAGCGCTATTCCCGACCTTTTCATC     71

BSNT_04002___    201 CGTTACAGCTGCTCAAGGAGAAGCGGTCATCGCAACAGATGAAACGAACG    250
                     ||||||||||||||||||||||||||||||||||||||||||||.|||||
BSU27580___yr     72 CGTTACAGCTGCTCAAGGAGAAGCGGTCATCGCAACAGATGAAATGAACG    121

BSNT_04002___    251 TCAGAAGCGGCCCTGGGCTTAGCTACGGCATTACAGCGGAAGTAAAAAAG    300
                     |||||||||||||.||||||||||||||||||||||||||||||||||||
BSU27580___yr    122 TCAGAAGCGGCCCAGGGCTTAGCTACGGCATTACAGCGGAAGTAAAAAAG    171

BSNT_04002___    301 GGAGAACGCTATCCAATTTTAAAGGAAGATGGAGACTGGGTGCAGATACA    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    172 GGAGAACGCTATCCAATTTTAAAGGAAGATGGAGACTGGGTGCAGATACA    221

BSNT_04002___    351 GCTTGGTTCCGGAGAAAAGGGCTGGGTAGTCTCCTGGCTTATTACAAAGG    400
                     |||||||||.||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    222 GCTTGGTTCTGGAGAAAAGGGCTGGGTAGTCTCCTGGCTTATTACAAAGG    271

BSNT_04002___    401 AAGACCAGGCCAGCACAAGCTCCTCAGGAAGCAGTGACACTGTGACATCA    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    272 AAGACCAGGCCAGCACAAGCTCCTCAGGAAGCAGTGACACTGTGACATCA    321

BSNT_04002___    451 ACAGACCCCGATCTGCGGATGAGAAGCGGCCCGGGCACTTCCTACGAAGT    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    322 ACAGACCCCGATCTGCGGATGAGAAGCGGCCCGGGCACTTCCTACGAAGT    371

BSNT_04002___    501 CATCGGCAAATTCCCGCAAGGCAGCCAAGCATCTGTCATTGATAAAGATT    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    372 CATCGGCAAATTCCCGCAAGGCAGCCAAGCATCTGTCATTGATAAAGATT    421

BSNT_04002___    551 CGGGCTGGATCAAGATATCCTATCACAGTGCCACCGGGTGGGTATCATCT    600
                     |||||||||||||||||||||||||||||||||||||.||||||||||||
BSU27580___yr    422 CGGGCTGGATCAAGATATCCTATCACAGTGCCACCGGATGGGTATCATCT    471

BSNT_04002___    601 GAATATGTCACATCAGGAGGCAGCAGTTCAGCGTCTGATGAGAGTGACCA    650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    472 GAATATGTCACATCAGGAGGCAGCAGTTCAGCGTCTGATGAGAGTGACCA    521

BSNT_04002___    651 AACCGAGGATTCCGGTGCGTCAACGACGGGCACAGTCGGTGTTTCTTCGC    700
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    522 AACCGAGGATTCCGGTGCGTCAACGACGGGCACAGTCGGTGTTTCTTCGC    571

BSNT_04002___    701 TAAATGTAAGAGCCTCCGCCTCACATGACGCGGCAATTATAACAAAACTT    750
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    572 TAAATGTAAGAGCCTCCGCCTCACATGACGCGGCAATTATAACAAAACTT    621

BSNT_04002___    751 GATCGCGGAACGAAACTGACGGTTCTCAACGAGAAAAATGGCTGGGCTCA    800
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    622 GATCGCGGAACGAAACTGACGGTTCTCAACGAGAAAAATGGCTGGGCTCA    671

BSNT_04002___    801 CATTGAGGTGAACGGGCTAAAAGGCTGGGTTGCAAGCCATTACCTTTTGA    850
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    672 CATTGAGGTGAACGGGCTAAAAGGCTGGGTTGCAAGCCATTACCTTTTGA    721

BSNT_04002___    851 CTAGTTCTGTTCCAGCTGATGATTCAGCAAATGCCGGCAGTTCATCCTCC    900
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    722 CTAGTTCTGTTCCAGCTGATGATTCAGCAAATGCCGGCAGTTCATCCTCC    771

BSNT_04002___    901 GCTAAAAAAGCCTATATCATGTACGGAGGAACGAATCTAAGAAGTGATGC    950
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    772 GCTAAAAAAGCCTATATCATGTACGGAGGAACGAATCTAAGAAGTGATGC    821

BSNT_04002___    951 GTCAACATCAGCTTCAATCGTTGAGCGTGCTGCCAAAGGAGATTCATACA   1000
                     |||||||||||||||.|||||||||||.||||||||||||||||||||||
BSU27580___yr    822 GTCAACATCAGCTTCGATCGTTGAGCGCGCTGCCAAAGGAGATTCATACA    871

BSNT_04002___   1001 CCATTACCGGTTCAAAGGGAAGCTGGTATGAAATAAAGCTTGATAACGGG   1050
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    872 CCATTACCGGTTCAAAGGGAAGCTGGTATGAAATAAAGCTTGATAACGGG    921

BSNT_04002___   1051 CAAACTGCTTATGTAGCCAATTGGGTGGTCCAAACGTCTAAAAGCGCAGA   1100
                     ||.|||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    922 CAGACTGCTTATGTAGCCAATTGGGTGGTCCAAACGTCTAAAAGCGCAGA    971

BSNT_04002___   1101 AGAAGCAGGTGAACCGCCAGTCTCTGATTCCCCGTCTGGAAACGGCTCTC   1150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr    972 AGAAGCAGGTGAACCGCCAGTCTCTGATTCCCCGTCTGGAAACGGCTCTC   1021

BSNT_04002___   1151 TAAACAATAAAACGATTATTGTTGACCCGGGACATGGAGGAAAAGACAGC   1200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr   1022 TAAACAATAAAACGATTATTGTTGACCCGGGACATGGAGGAAAAGACAGC   1071

BSNT_04002___   1201 GGAACGATCGGGTATTCGGGGAAATTCGAGAAAAACCTGACGATCAAAAC   1250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr   1072 GGAACGATCGGGTATTCGGGGAAATTCGAGAAAAACCTGACGATCAAAAC   1121

BSNT_04002___   1251 GGCAAAACTGCTCGCCAGCAAACTTAGATCGGCTGGAGCGGATGTATATG   1300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr   1122 GGCAAAACTGCTCGCCAGCAAACTTAGATCGGCTGGAGCGGATGTATATG   1171

BSNT_04002___   1301 TGACACGCCAGGATGATACCTTTGTCAGCCTGCAGTCACGGGTCTCTACC   1350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr   1172 TGACACGCCAGGATGATACCTTTGTCAGCCTGCAGTCACGGGTCTCTACC   1221

BSNT_04002___   1351 TCTCACTACCGTAACGCTGACGCCTTTATCAGCATTCATTATGACAGCTA   1400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr   1222 TCTCACTACCGTAACGCTGACGCCTTTATCAGCATTCATTATGACAGCTA   1271

BSNT_04002___   1401 TGCGGATACCTCTACAAGAGGCAGTACAGCATATTACTACAGTCCTGCCA   1450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr   1272 TGCGGATACCTCTACAAGAGGCAGTACAGCATATTACTACAGTCCTGCCA   1321

BSNT_04002___   1451 AAGATCAGGAACTCGCATCAGATGTCCACTCAGAAGTGGTGAAGCGTTCT   1500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr   1322 AAGATCAGGAACTCGCATCAGATGTCCACTCAGAAGTGGTGAAGCGTTCT   1371

BSNT_04002___   1501 TCCATTCCAGACCGCGGCGTATTATTCGGAGATTATTATGTGCTCCGGGA   1550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr   1372 TCCATTCCAGACCGCGGCGTATTATTCGGAGATTATTATGTGCTCCGGGA   1421

BSNT_04002___   1551 AAACAGACAGCCCGCTATGCTGTACGAGCTGGGATATGTAAGCCATCCGC   1600
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr   1422 AAACAGACAGCCCGCTATGCTGTACGAGCTGGGATATGTAAGCCATCCGC   1471

BSNT_04002___   1601 AGGAAGAAGCCATTGTACATAGCAATTCATACCAAGAAAAAGTAACAGAT   1650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU27580___yr   1472 AGGAAGAAGCCATTGTACATAGCAATTCATACCAAGAAAAAGTAACAGAT   1521

BSNT_04002___   1651 GGGATCGAAAGCGGATTAGAGAAATACTTCCAATAA   1686
                     ||||||||||||||||||||||||||||||||||||
BSU27580___yr   1522 GGGATCGAAAGCGGATTAGAGAAATACTTCCAATAA   1557


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