Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03467 and BSU23310

See Amino acid alignment / Visit BSNT_03467 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:15
# Commandline: needle
#    -asequence dna-align/BSNT_03467___sipS.1.22522.seq
#    -bsequence dna-align/BSU23310___sipS.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03467___sipS-BSU23310___sipS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03467___sipS-BSU23310___sipS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03467___sipS
# 2: BSU23310___sipS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 555
# Identity:     534/555 (96.2%)
# Similarity:   534/555 (96.2%)
# Gaps:           3/555 ( 0.5%)
# Score: 2587.0
# 
#
#=======================================

BSNT_03467___      1 TTGAAATCAGAAAATGTTTCGAAGAAAAAATCAATATTAGAATGGGTTAA     50
                     |||||||||||||||||||||||||||||.||||||||||||||||..||
BSU23310___si      1 TTGAAATCAGAAAATGTTTCGAAGAAAAAGTCAATATTAGAATGGGCAAA     50

BSNT_03467___     51 AGCAATTGTGATTGCTGTCGTTCTTGCTTTGCTCATCCGCAACTTTATTT    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU23310___si     51 AGCAATTGTGATTGCTGTCGTTCTTGCTTTGCTCATCCGCAACTTTATTT    100

BSNT_03467___    101 TTGCGCCGTATGTCGTTGACGGTGAATCCATGGAACCTACACTTCACGAT    150
                     |||||||||||||||||||.|||||.||.|||.|.||||||||||||.|.
BSU23310___si    101 TTGCGCCGTATGTCGTTGATGGTGACTCTATGTATCCTACACTTCACAAC    150

BSNT_03467___    151 CGTGAAAGGGTCTTTGTCAATATGACAGTCAAATACATCGGCGAGTTTGA    200
                     |||||||||||.|||||.||||||||||||||||||||||||||||||||
BSU23310___si    151 CGTGAAAGGGTTTTTGTTAATATGACAGTCAAATACATCGGCGAGTTTGA    200

BSNT_03467___    201 TAGAGGAGACATTGTCGTGTTAAACGGAGATGATGTTCACTATGTCAAAC    250
                     ||||||||||||.|||||||||||||||||||||||||||||||||||||
BSU23310___si    201 TAGAGGAGACATCGTCGTGTTAAACGGAGATGATGTTCACTATGTCAAAC    250

BSNT_03467___    251 GTATTATCGGCCTTCCCGGCGATACGGTTGAGATGAAAAATGACCAGCTC    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU23310___si    251 GTATTATCGGCCTTCCCGGCGATACGGTTGAGATGAAAAATGACCAGCTC    300

BSNT_03467___    301 TATATCAACGGGAAAAAGGTGGACGAACCTTATTTGGCGGCTAATAAAAA    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU23310___si    301 TATATCAACGGGAAAAAGGTGGACGAACCTTATTTGGCGGCTAATAAAAA    350

BSNT_03467___    351 GAGAGCGAAACAGGACGG---TAAACCTTTGACCGATGATTTCGGCCCGG    397
                     ||||||||||||||||||   |.|.|.|||||||||||||||||||||||
BSU23310___si    351 GAGAGCGAAACAGGACGGTTTTGACCATTTGACCGATGATTTCGGCCCGG    400

BSNT_03467___    398 TTAAAGTGCCTGATAACAAGTATTTTGTGATGGGTGACAATCGTCGGAAT    447
                     ||||||||||||||||||||||||||||||||||||||||||||||.|||
BSU23310___si    401 TTAAAGTGCCTGATAACAAGTATTTTGTGATGGGTGACAATCGTCGCAAT    450

BSNT_03467___    448 TCCATGGACAGCCGTAACGGACTTGGCCTCTTCACGAAAAAACAAATTGC    497
                     ||||||||||||||||||||.|||||||||||||||||||||||||||||
BSU23310___si    451 TCCATGGACAGCCGTAACGGCCTTGGCCTCTTCACGAAAAAACAAATTGC    500

BSNT_03467___    498 GGGTACGTCAAAGTTTGTTTTCTACCCGTTTAACGAAATGCGCAAAACAA    547
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU23310___si    501 GGGTACGTCAAAGTTTGTTTTCTACCCGTTTAACGAAATGCGCAAAACAA    550

BSNT_03467___    548 ATTAG    552
                     |||||
BSU23310___si    551 ATTAG    555


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.